3PLXB

The crystal structure of aspartate alpha-decarboxylase from campylobacter jejuni subsp. jejuni nctc 11168
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
100
structure length
100
Chain Sequence
ISIDEKLLQASGILEYEKVQVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKPKVVFVDENNTATKITNYEKHGAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of aspartate alpha-decarboxylase from Campylobacter jejuni subsp. jejuni NCTC 11168
rcsb
molecule tags Lyase
source organism Campylobacter jejuni subsp. jejuni
molecule keywords Aspartate 1-decarboxylase
total genus 19
structure length 100
sequence length 100
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2010-11-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3plxB00
2E7ZA 2PMZA 1VC3B 2E2IA 1WCMA 3IR7A 3GTKA 1Y5IA 3IR5A 2NVXA 2DMRA 4AZDA 3HKZA 4AONB 2JIQA 1DMRA 1CZ4A 3HU3A 2WB1A 5DYIA 1EU1A 2PJHB 3CF2A 5FTJA 1AW8B 4C2MA 1TWFA 2KI8A 1KQFA 2JA5A 3H0GA 1R7RA 3PLXB 1QCSA 1E18A 2EEOB 4AYBA 1AA6A 5FTLA 3TIWA 2Y0SA 4GA5A 4CRZA 2YU9A 2C45A 2B63A 2V3VA 3DMRA 1UHEA 1YLEA 1SIWA 3QQ7A 4CS0A 2R93A 1PT1A 2JIRA 2JIOA 1G8KA 5FTMA 1PYQA 1PQHA 5C18A 1Y1VA 5EPPA 2V45A 1CR5A 4AOKB 3ML1A 2VPZA 4CRYG 1I50A 1WLFA 1IW7D 3GTLA 1E5VA 2JIMA 3TM7B 1G8JA 1H0HA 4QIWA 4KODA 2JA6A 4KDIA 5C1BA 1R27A 2NAPA 1KQGA 5B6CA 1E60A 5FTNA 5DYGA 1I3QA 1SFOA 2E2HA 5GLFA 5T5MD 4KO8A 1E61A 3QC8A 2IV2X 1OGYA 3GTOA 1TWHA 4AAYA 1QDNA 1CZ5A 2NVYA 4DMRA 2JIPA 3GTJA 1H5NA 2VPYA 3QQ8A 1K83A 3QWZA 3GTPA 1E32A 1PT0A 1Q16A 3HU2A 1FDOA 3O5AA 2NYAA 1PQEA 1S3SA 1PPYA 1TWCA 2VPXA 1Y4ZA 1UHDA 1TWGA 3FKIA 1TWAA 3CQZA 3HU1A 5T5ID 1PQFA 2VPWA 4RV0A 2R92A 2R7ZA 1Y1WA 5FTKA 3GTQA 3IR6A 2JA7A 3GTMA 4D7ZB 1DMSA 4KDLA 3GTGA 2VUMA 2WAQA 1TMOA 3OUGA 1R9TA 1FDIA 4KLNA 1PYUB 4GA6A
chains in the Genus database with same CATH superfamily
2E7ZA 2PMZA 1VC3B 2E2IA 1WCMA 3IR7A 1HD5A 3GTKA 1Y5IA 3IR5A 2NVXA 2DMRA 4AZDA 3HKZA 2O5JD 3X2LA 4AONB 3SUMA 2A6ED 2PNWA 2PICA 2JIQA 1DMRA 1CZ4A 3HU3A 2WB1A 5DYIA 1EU1A 1OA7A 2PJHB 3CF2A 1ZYRD 5FTJA 3X2NA 4FG4A 1AW8B 4C2MA 5GM9A 1TWFA 3X2PA 2KI8A 1KQFA 2JA5A 3H0GA 1R7RA 4NOHA 1ZC1A 2HCZX 3PLXB 1QCSA 1E18A 2EEOB 4AYBA 1AA6A 5FTLA 3TIWA 2Y0SA 3CZBA 4GA5A 4CRZA 2C45A 2YU9A 2B63A 2V3VA 3DMRA 1UHEA 1YLEA 1SIWA 3QQ7A 4CS0A 2R93A 1PT1A 2AE0X 2JIRA 1G8KA 2JIOA 5FTMA 1PYQA 1PQHA 5C18A 2BE5D 1Y1VA 5EPPA 2V45A 1CR5A 4AOKB 3ML1A 2VPZA 4CRYG 1I50A 1BW4A 1WLFA 1IW7D 2GAEA 3GTLA 1E5VA 2JIMA 3TM7B 1G8JA 1H0HA 4QIWA 4KODA 2JA6A 4KDIA 5C1BA 1R27A 5H4UA 3SULA 4JS7A 2A6HD 2A69D 2NAPA 1KQGA 5B6CA 1E60A 3SUJA 5FTNA 5DYGA 2ENGA 1I3QA 1SFOA 2E2HA 1BW3A 2A68D 1SMYD 5GLFA 2PJJA 2CW0D 5T5MD 4KO8A 1E61A 4ZM7A 3QC8A 3M3GA 2IV2X 4FFTA 1OGYA 3SUKA 4JP6A 1YNJD 3GTOA 1TWHA 2YUJA 5GLXA 4AAYA 1QDNA 1N10A 1CZ5A 2NVYA 4DMRA 2JIPA 3D30A 3X2IA 1H5NA 3GTJA 2VPYA 3QQ8A 1K83A 2G6GA 2G5DA 2BH0A 2PI8A 3QWZA 3GTPA 1E32A 1PT0A 1Q16A 3HU2A 4JJOA 1L8FA 1FDOA 3O5AA 4ENGA 2NYAA 1PQEA 1S3SA 1PPYA 1WC2A 1TWCA 2VPXA 1Y4ZA 3X2JA 1UHDA 3X2HA 1TWGA 3X2GA 3FKIA 1OA9A 1TWAA 3CQZA 3HU1A 5T5ID 1PQFA 2VPWA 4RV0A 2R92A 3X2OA 2R7ZA 1Y1WA 1YNND 4FG2A 4JCWA 5FTKA 3GTQA 3IR6A 2JA7A 3GTMA 4AVRA 4D7ZB 1DMSA 3ENGA 2KQAA 4KDLA 3X2MA 4L48A 3GTGA 2VUMA 2WAQA 1TMOA 3X2KA 3OUGA 1R9TA 1FDIA 4JP7A 4KLNA 4FERA 1PYUB 4GA6A 5GLYA
chains in the Genus database with same CATH topology
2E7ZA 2PMZA 1VC3B 2E2IA 1WCMA 3IR7A 3GTKA 1Y5IA 3IR5A 2NVXA 2DMRA 4AZDA 3HKZA 2O5JD 4AONB 2A6ED 2PNWA 2PICA 2JIQA 1DMRA 1CZ4A 3HU3A 2WB1A 5DYIA 1EU1A 2PJHB 3CF2A 1ZYRD 5FTJA 1AW8B 4C2MA 1TWFA 2KI8A 1KQFA 2JA5A 3H0GA 1R7RA 1ZC1A 3PLXB 1QCSA 1E18A 2EEOB 4AYBA 1AA6A 5FTLA 3TIWA 2Y0SA 3CZBA 4GA5A 4CRZA 2C45A 2YU9A 2B63A 2V3VA 3DMRA 1UHEA 1YLEA 1SIWA 3QQ7A 4CS0A 2R93A 1PT1A 2AE0X 2JIRA 1G8KA 2JIOA 5FTMA 1PYQA 1PQHA 5C18A 2BE5D 1Y1VA 5EPPA 2V45A 1CR5A 4AOKB 3ML1A 2VPZA 4CRYG 1I50A 1WLFA 1IW7D 2GAEA 3GTLA 1E5VA 2JIMA 3TM7B 1G8JA 1H0HA 4QIWA 4KODA 2JA6A 4KDIA 5C1BA 1R27A 2A6HD 2A69D 2NAPA 1KQGA 5B6CA 1E60A 5FTNA 5DYGA 1I3QA 1SFOA 2E2HA 2A68D 1SMYD 5GLFA 2PJJA 2CW0D 5T5MD 4KO8A 1E61A 3QC8A 2IV2X 1OGYA 1YNJD 3GTOA 1TWHA 2YUJA 4AAYA 1QDNA 1CZ5A 2NVYA 4DMRA 2JIPA 3GTJA 1H5NA 2VPYA 3QQ8A 1K83A 2G6GA 2G5DA 2PI8A 3QWZA 3GTPA 1E32A 1PT0A 1Q16A 3HU2A 1FDOA 3O5AA 2NYAA 1PQEA 1S3SA 1PPYA 1TWCA 2VPXA 1Y4ZA 1UHDA 1TWGA 3FKIA 1TWAA 3CQZA 3HU1A 5T5ID 1PQFA 2VPWA 4RV0A 2R92A 2R7ZA 1Y1WA 1YNND 5FTKA 3GTQA 3IR6A 2JA7A 3GTMA 4D7ZB 1DMSA 4KDLA 3GTGA 2VUMA 2WAQA 1TMOA 3OUGA 1R9TA 1FDIA 4KLNA 4NOHA 1PYUB 4GA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E7Z A;  2PMZ A;  1VC3 B;  2E2I A;  1WCM A;  3IR7 A;  3GTK A;  1Y5I A;  3IR5 A;  2NVX A;  2DMR A;  4AZD A;  3HKZ A;  4AON B;  2JIQ A;  1DMR A;  1CZ4 A;  3HU3 A;  2WB1 A;  5DYI A;  1EU1 A;  2PJH B;  3CF2 A;  5FTJ A;  1AW8 B;  4C2M A;  1TWF A;  2KI8 A;  1KQF A;  2JA5 A;  3H0G A;  1R7R A;  3PLX B;  1QCS A;  1E18 A;  2EEO B;  4AYB A;  1AA6 A;  5FTL A;  3TIW A;  2Y0S A;  4GA5 A;  4CRZ A;  2YU9 A;  2C45 A;  2B63 A;  2V3V A;  3DMR A;  1UHE A;  1YLE A;  1SIW A;  3QQ7 A;  4CS0 A;  2R93 A;  1PT1 A;  2JIR A;  2JIO A;  1G8K A;  5FTM A;  1PYQ A;  1PQH A;  5C18 A;  1Y1V A;  5EPP A;  2V45 A;  1CR5 A;  4AOK B;  3ML1 A;  2VPZ A;  4CRY G;  1I50 A;  1WLF A;  1IW7 D;  3GTL A;  1E5V A;  2JIM A;  3TM7 B;  1G8J A;  1H0H A;  4QIW A;  4KOD A;  2JA6 A;  4KDI A;  5C1B A;  1R27 A;  2NAP A;  1KQG A;  5B6C A;  1E60 A;  5FTN A;  5DYG A;  1I3Q A;  1SFO A;  2E2H A;  5GLF A;  5T5M D;  4KO8 A;  1E61 A;  3QC8 A;  2IV2 X;  1OGY A;  3GTO A;  1TWH A;  4AAY A;  1QDN A;  1CZ5 A;  2NVY A;  4DMR A;  2JIP A;  3GTJ A;  1H5N A;  2VPY A;  3QQ8 A;  1K83 A;  3QWZ A;  3GTP A;  1E32 A;  1PT0 A;  1Q16 A;  3HU2 A;  1FDO A;  3O5A A;  2NYA A;  1PQE A;  1S3S A;  1PPY A;  1TWC A;  2VPX A;  1Y4Z A;  1UHD A;  1TWG A;  3FKI A;  1TWA A;  3CQZ A;  3HU1 A;  5T5I D;  1PQF A;  2VPW A;  4RV0 A;  2R92 A;  2R7Z A;  1Y1W A;  5FTK A;  3GTQ A;  3IR6 A;  2JA7 A;  3GTM A;  4D7Z B;  1DMS A;  4KDL A;  3GTG A;  2VUM A;  2WAQ A;  1TMO A;  3OUG A;  1R9T A;  1FDI A;  4KLN A;  1PYU B;  4GA6 A; 
#chains in the Genus database with same CATH topology
 2E7Z A;  2PMZ A;  1VC3 B;  2E2I A;  1WCM A;  3IR7 A;  1HD5 A;  3GTK A;  1Y5I A;  3IR5 A;  2NVX A;  2DMR A;  4AZD A;  3HKZ A;  2O5J D;  3X2L A;  4AON B;  3SUM A;  2A6E D;  2PNW A;  2PIC A;  2JIQ A;  1DMR A;  1CZ4 A;  3HU3 A;  2WB1 A;  5DYI A;  1EU1 A;  1OA7 A;  2PJH B;  3CF2 A;  1ZYR D;  5FTJ A;  3X2N A;  4FG4 A;  1AW8 B;  4C2M A;  5GM9 A;  1TWF A;  3X2P A;  2KI8 A;  1KQF A;  2JA5 A;  3H0G A;  1R7R A;  4NOH A;  1ZC1 A;  2HCZ X;  3PLX B;  1QCS A;  1E18 A;  2EEO B;  4AYB A;  1AA6 A;  5FTL A;  3TIW A;  2Y0S A;  3CZB A;  4GA5 A;  4CRZ A;  2C45 A;  2YU9 A;  2B63 A;  2V3V A;  3DMR A;  1UHE A;  1YLE A;  1SIW A;  3QQ7 A;  4CS0 A;  2R93 A;  1PT1 A;  2AE0 X;  2JIR A;  1G8K A;  2JIO A;  5FTM A;  1PYQ A;  1PQH A;  5C18 A;  2BE5 D;  1Y1V A;  5EPP A;  2V45 A;  1CR5 A;  4AOK B;  3ML1 A;  2VPZ A;  4CRY G;  1I50 A;  1BW4 A;  1WLF A;  1IW7 D;  2GAE A;  3GTL A;  1E5V A;  2JIM A;  3TM7 B;  1G8J A;  1H0H A;  4QIW A;  4KOD A;  2JA6 A;  4KDI A;  5C1B A;  1R27 A;  5H4U A;  3SUL A;  4JS7 A;  2A6H D;  2A69 D;  2NAP A;  1KQG A;  5B6C A;  1E60 A;  3SUJ A;  5FTN A;  5DYG A;  2ENG A;  1I3Q A;  1SFO A;  2E2H A;  1BW3 A;  2A68 D;  1SMY D;  5GLF A;  2PJJ A;  2CW0 D;  5T5M D;  4KO8 A;  1E61 A;  4ZM7 A;  3QC8 A;  3M3G A;  2IV2 X;  4FFT A;  1OGY A;  3SUK A;  4JP6 A;  1YNJ D;  3GTO A;  1TWH A;  2YUJ A;  5GLX A;  4AAY A;  1QDN A;  1N10 A;  1CZ5 A;  2NVY A;  4DMR A;  2JIP A;  3D30 A;  3X2I A;  1H5N A;  3GTJ A;  2VPY A;  3QQ8 A;  1K83 A;  2G6G A;  2G5D A;  2BH0 A;  2PI8 A;  3QWZ A;  3GTP A;  1E32 A;  1PT0 A;  1Q16 A;  3HU2 A;  4JJO A;  1L8F A;  1FDO A;  3O5A A;  4ENG A;  2NYA A;  1PQE A;  1S3S A;  1PPY A;  1WC2 A;  1TWC A;  2VPX A;  1Y4Z A;  3X2J A;  1UHD A;  3X2H A;  1TWG A;  3X2G A;  3FKI A;  1OA9 A;  1TWA A;  3CQZ A;  3HU1 A;  5T5I D;  1PQF A;  2VPW A;  4RV0 A;  2R92 A;  3X2O A;  2R7Z A;  1Y1W A;  1YNN D;  4FG2 A;  4JCW A;  5FTK A;  3GTQ A;  3IR6 A;  2JA7 A;  3GTM A;  4AVR A;  4D7Z B;  1DMS A;  3ENG A;  2KQA A;  4KDL A;  3X2M A;  4L48 A;  3GTG A;  2VUM A;  2WAQ A;  1TMO A;  3X2K A;  3OUG A;  1R9T A;  1FDI A;  4JP7 A;  4KLN A;  4FER A;  1PYU B;  4GA6 A;  5GLY A; 
#chains in the Genus database with same CATH homology
 2E7Z A;  2PMZ A;  1VC3 B;  2E2I A;  1WCM A;  3IR7 A;  3GTK A;  1Y5I A;  3IR5 A;  2NVX A;  2DMR A;  4AZD A;  3HKZ A;  2O5J D;  4AON B;  2A6E D;  2PNW A;  2PIC A;  2JIQ A;  1DMR A;  1CZ4 A;  3HU3 A;  2WB1 A;  5DYI A;  1EU1 A;  2PJH B;  3CF2 A;  1ZYR D;  5FTJ A;  1AW8 B;  4C2M A;  1TWF A;  2KI8 A;  1KQF A;  2JA5 A;  3H0G A;  1R7R A;  1ZC1 A;  3PLX B;  1QCS A;  1E18 A;  2EEO B;  4AYB A;  1AA6 A;  5FTL A;  3TIW A;  2Y0S A;  3CZB A;  4GA5 A;  4CRZ A;  2C45 A;  2YU9 A;  2B63 A;  2V3V A;  3DMR A;  1UHE A;  1YLE A;  1SIW A;  3QQ7 A;  4CS0 A;  2R93 A;  1PT1 A;  2AE0 X;  2JIR A;  1G8K A;  2JIO A;  5FTM A;  1PYQ A;  1PQH A;  5C18 A;  2BE5 D;  1Y1V A;  5EPP A;  2V45 A;  1CR5 A;  4AOK B;  3ML1 A;  2VPZ A;  4CRY G;  1I50 A;  1WLF A;  1IW7 D;  2GAE A;  3GTL A;  1E5V A;  2JIM A;  3TM7 B;  1G8J A;  1H0H A;  4QIW A;  4KOD A;  2JA6 A;  4KDI A;  5C1B A;  1R27 A;  2A6H D;  2A69 D;  2NAP A;  1KQG A;  5B6C A;  1E60 A;  5FTN A;  5DYG A;  1I3Q A;  1SFO A;  2E2H A;  2A68 D;  1SMY D;  5GLF A;  2PJJ A;  2CW0 D;  5T5M D;  4KO8 A;  1E61 A;  3QC8 A;  2IV2 X;  1OGY A;  1YNJ D;  3GTO A;  1TWH A;  2YUJ A;  4AAY A;  1QDN A;  1CZ5 A;  2NVY A;  4DMR A;  2JIP A;  3GTJ A;  1H5N A;  2VPY A;  3QQ8 A;  1K83 A;  2G6G A;  2G5D A;  2PI8 A;  3QWZ A;  3GTP A;  1E32 A;  1PT0 A;  1Q16 A;  3HU2 A;  1FDO A;  3O5A A;  2NYA A;  1PQE A;  1S3S A;  1PPY A;  1TWC A;  2VPX A;  1Y4Z A;  1UHD A;  1TWG A;  3FKI A;  1TWA A;  3CQZ A;  3HU1 A;  5T5I D;  1PQF A;  2VPW A;  4RV0 A;  2R92 A;  2R7Z A;  1Y1W A;  1YNN D;  5FTK A;  3GTQ A;  3IR6 A;  2JA7 A;  3GTM A;  4D7Z B;  1DMS A;  4KDL A;  3GTG A;  2VUM A;  2WAQ A;  1TMO A;  3OUG A;  1R9T A;  1FDI A;  4KLN A;  4NOH A;  1PYU B;  4GA6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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