3PQHA

Crystal structure of the c-terminal fragment of the bacteriophage phi92 membrane-piercing protein gp138
Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
107
structure length
107
Chain Sequence
EKVIISNNKQTYASFDPNGNISVYNTQGMKIDMTPNSIVLTDAGGGKLTLQGGTMTYKGGTVNLNGLTITPDGRMTDSGGIGLHTHTHPVRGVETGGSTVTSDKPNG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Bacteriophage phi92
publication title Phage pierces the host cell membrane with the iron-loaded spike.
pubmed doi rcsb
molecule keywords gene product 138
total genus 13
structure length 107
sequence length 107
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-11-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.60 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 3pqhA02
2.20.220.20 Mainly Beta Single Sheet Glycosyl hydrolase fold Glycosyl hydrolase fold 3pqhA01
3PQHA 3WITA
chains in the Genus database with same CATH superfamily
2QRVA 3FSBA 3TDBA 3KCEA 2WAEA 2JMFA 5E66A 2JXWA 4GLXA 5U47A 2YSHA 1EG3A 2OWOA 1WR7A 1ZCNA 2BA1A 2ITKA 3L4HA 3CNGA 2Y8NB 2DJYA 2YSBA 3KAFA 3NTPA 3MCBB 3ODKA 2JX8A 3FSCA 2ZR6A 2DK7A 3M7NA 3KAIA 2WADA 2E45A 3M85A 2ZQVA 2XP5A 3LKXA 4E5RA 2XP4A 2YSIA 4A0UA 2XP8A 5AHTA 2JV4A 3KADA 3WITA 1PINA 5E65A 3KAGA 2DK1A 2RE3A 5E5WA 2XP7A 2ZR4A 5E64A 2GDUA 4U86A 3TC5A 2M8JA 1EG4A 2XP3A 5E62A 3MCBA 4QIBA 4REXA 1K9QA 2XP9A 2XPBA 3KAHA 3FS8A 3LE4A 2ZQTA 1R7AA 4U85A 5CQ2A 2M8IA 3TCZA 2L4JA 4A0TA 1K9RA 2ZQSA 2XPAA 1JMQA 2DMVA 3LKXB 3MQHA 2M3OW 1O6WA 2XP6A 2DWVA 3OOBA 5C8BB 2ZAJA 1TR8A 3KABA 1RP5A 2MDIA 1NMVA 2LAJA 2YAJB 2ZR5A 2YSFA 1I5HW 2YSGA 2EZ5W 2GDVA 1WMVA 2Q5AA 3MQGA 1FLCA 3WH0A 1F8AB 1TK7A 2F21A 2KXQA 1YW5A 4U84A 2ZQUA 3PQHA
chains in the Genus database with same CATH topology
2QRVA 3FSBA 3TDBA 3KCEA 2WAEA 2JMFA 5E66A 2JXWA 4GLXA 5U47A 2YSHA 1EG3A 2OWOA 1WR7A 1ZCNA 2BA1A 2ITKA 3L4HA 3CNGA 2Y8NB 2DJYA 2YSBA 3KAFA 3NTPA 3MCBB 3ODKA 2JX8A 3FSCA 2ZR6A 2DK7A 3M7NA 3KAIA 2WADA 2E45A 3M85A 2ZQVA 2XP5A 3LKXA 4E5RA 2XP4A 2YSIA 4A0UA 2XP8A 5AHTA 2JV4A 3KADA 3WITA 1PINA 5E65A 3KAGA 2DK1A 2RE3A 5E5WA 2XP7A 2ZR4A 5E64A 4U86A 3TC5A 2M8JA 1EG4A 2XP3A 5E62A 3MCBA 4QIBA 4REXA 1K9QA 2XP9A 2XPBA 3KAHA 3FS8A 3LE4A 2ZQTA 4U85A 5CQ2A 2M8IA 3TCZA 2L4JA 4A0TA 1K9RA 2ZQSA 2XPAA 1JMQA 2DMVA 3LKXB 3MQHA 2M3OW 1O6WA 2XP6A 2DWVA 3OOBA 2ZAJA 1TR8A 3KABA 1RP5A 2MDIA 1NMVA 2LAJA 2YAJB 2ZR5A 2YSFA 1I5HW 2YSGA 2EZ5W 1WMVA 2Q5AA 3MQGA 1FLCA 3WH0A 1F8AB 1TK7A 2F21A 2KXQA 1YW5A 4U84A 2ZQUA 3PQHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PQH A;  3WIT A; 
#chains in the Genus database with same CATH topology
 2QRV A;  3FSB A;  3TDB A;  3KCE A;  2WAE A;  2JMF A;  5E66 A;  2JXW A;  4GLX A;  5U47 A;  2YSH A;  1EG3 A;  2OWO A;  1WR7 A;  1ZCN A;  2BA1 A;  2ITK A;  3L4H A;  3CNG A;  2Y8N B;  2DJY A;  2YSB A;  3KAF A;  3NTP A;  3MCB B;  3ODK A;  2JX8 A;  3FSC A;  2ZR6 A;  2DK7 A;  3M7N A;  3KAI A;  2WAD A;  2E45 A;  3M85 A;  2ZQV A;  2XP5 A;  3LKX A;  4E5R A;  2XP4 A;  2YSI A;  4A0U A;  2XP8 A;  5AHT A;  2JV4 A;  3KAD A;  3WIT A;  1PIN A;  5E65 A;  3KAG A;  2DK1 A;  2RE3 A;  5E5W A;  2XP7 A;  2ZR4 A;  5E64 A;  2GDU A;  4U86 A;  3TC5 A;  2M8J A;  1EG4 A;  2XP3 A;  5E62 A;  3MCB A;  4QIB A;  4REX A;  1K9Q A;  2XP9 A;  2XPB A;  3KAH A;  3FS8 A;  3LE4 A;  2ZQT A;  1R7A A;  4U85 A;  5CQ2 A;  2M8I A;  3TCZ A;  2L4J A;  4A0T A;  1K9R A;  2ZQS A;  2XPA A;  1JMQ A;  2DMV A;  3LKX B;  3MQH A;  2M3O W;  1O6W A;  2XP6 A;  2DWV A;  3OOB A;  5C8B B;  2ZAJ A;  1TR8 A;  3KAB A;  1RP5 A;  2MDI A;  1NMV A;  2LAJ A;  2YAJ B;  2ZR5 A;  2YSF A;  1I5H W;  2YSG A;  2EZ5 W;  2GDV A;  1WMV A;  2Q5A A;  3MQG A;  1FLC A;  3WH0 A;  1F8A B;  1TK7 A;  2F21 A;  2KXQ A;  1YW5 A;  4U84 A;  2ZQU A;  3PQH A; 
#chains in the Genus database with same CATH homology
 2QRV A;  3FSB A;  3TDB A;  3KCE A;  2WAE A;  2JMF A;  5E66 A;  2JXW A;  4GLX A;  5U47 A;  2YSH A;  1EG3 A;  2OWO A;  1WR7 A;  1ZCN A;  2BA1 A;  2ITK A;  3L4H A;  3CNG A;  2Y8N B;  2DJY A;  2YSB A;  3KAF A;  3NTP A;  3MCB B;  3ODK A;  2JX8 A;  3FSC A;  2ZR6 A;  2DK7 A;  3M7N A;  3KAI A;  2WAD A;  2E45 A;  3M85 A;  2ZQV A;  2XP5 A;  3LKX A;  4E5R A;  2XP4 A;  2YSI A;  4A0U A;  2XP8 A;  5AHT A;  2JV4 A;  3KAD A;  3WIT A;  1PIN A;  5E65 A;  3KAG A;  2DK1 A;  2RE3 A;  5E5W A;  2XP7 A;  2ZR4 A;  5E64 A;  4U86 A;  3TC5 A;  2M8J A;  1EG4 A;  2XP3 A;  5E62 A;  3MCB A;  4QIB A;  4REX A;  1K9Q A;  2XP9 A;  2XPB A;  3KAH A;  3FS8 A;  3LE4 A;  2ZQT A;  4U85 A;  5CQ2 A;  2M8I A;  3TCZ A;  2L4J A;  4A0T A;  1K9R A;  2ZQS A;  2XPA A;  1JMQ A;  2DMV A;  3LKX B;  3MQH A;  2M3O W;  1O6W A;  2XP6 A;  2DWV A;  3OOB A;  2ZAJ A;  1TR8 A;  3KAB A;  1RP5 A;  2MDI A;  1NMV A;  2LAJ A;  2YAJ B;  2ZR5 A;  2YSF A;  1I5H W;  2YSG A;  2EZ5 W;  1WMV A;  2Q5A A;  3MQG A;  1FLC A;  3WH0 A;  1F8A B;  1TK7 A;  2F21 A;  2KXQ A;  1YW5 A;  4U84 A;  2ZQU A;  3PQH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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