3X2OA

Neutron and x-ray joint refined structure of pccel45a apo form at 298k.
Total Genus 49
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
180
structure length
179
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Phanerochaete chrysosporium
publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
molecule keywords Endoglucanase V-like protein
total genus 49
structure length 179
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2oA00
2AE0X 4AVRA 3X2NA 2KQAA 2ENGA 1L8FA 2HCZX 4FFTA 4FG4A 5GM9A 4JJOA 4JP6A 3X2PA 3D30A 3X2LA 2PJJA 3ENGA 2G5DA 4JS7A 2GAEA 4JCWA 3X2JA 1OA9A 4ZM7A 3M3GA 4JP7A 3SUJA 4ENGA 3X2HA 3X2OA 2PI8A 5H4UA 4FERA 1HD5A 1OA7A 2G6GA 3X2KA 2BH0A 3X2GA 4FG2A 3X2MA 4L48A 5GLXA 3SUKA 3SULA 1N10A 1WC2A 3X2IA 2PICA 1BW4A 1BW3A 3CZBA 3SUMA 2PNWA 5GLYA
chains in the Genus database with same CATH superfamily
2V3VA 3HU3A 3H0GA 3X2NA 2ENGA 2WAQA 2HCZX 3HU2A 3PLXB 1TMOA 4JP6A 3D30A 2JIQA 2R92A 3TIWA 1QCSA 1E18A 1E60A 2JIMA 1OA9A 4KDLA 4KODA 3CF2A 2O5JD 2V45A 2JA7A 1ZYRD 3X2OA 1CR5A 3QC8A 3GTPA 1TWFA 3ML1A 2Y0SA 1DMSA 4FG2A 3X2MA 1G8JA 3GTLA 3GTKA 2NVXA 4KDIA 2PICA 3CQZA 1H0HA 3O5AA 1BW3A 1YLEA 3SUMA 4KO8A 5C18A 1TWCA 2AE0X 1E61A 2CW0D 4GA6A 4CS0A 1E5VA 4AVRA 2WB1A 2A6ED 4NOHA 5GM9A 3HKZA 1KQGA 4JJOA 2VPXA 2VPYA 5FTKA 3X2LA 2PJJA 3ENGA 4CRZA 2NYAA 3GTQA 1Y5IA 1ZC1A 1Y4ZA 1EU1A 1CZ4A 2GAEA 4ZM7A 3M3GA 5FTNA 1DMRA 4JP7A 2NVYA 3X2HA 4AYBA 5H4UA 2A68D 2EEOB 5DYIA 2R93A 1FDOA 1HD5A 1UHDA 2NAPA 3GTMA 2G6GA 3X2KA 1R9TA 1PYUB 5FTLA 2BE5D 3X2GA 1TWGA 1H5NA 1TWHA 3OUGA 1FDIA 1N10A 1WC2A 2JIOA 3X2IA 3CZBA 3IR6A 5T5ID 2C45A 1VC3B 3QQ7A 5GLYA 4D7ZB 3IR7A 2YUJA 1PPYA 1S3SA 2JIPA 1SIWA 5DYGA 2A6HD 1E32A 4FFTA 1WLFA 4AOKB 2JA6A 4RV0A 1R27A 5GLFA 3QWZA 3GTOA 1YNND 2VPWA 2VUMA 1AA6A 4JS7A 3TM7B 3X2JA 1UHEA 1OGYA 1Q16A 3SUJA 2YU9A 2R7ZA 1AW8B 1PQHA 1OA7A 3HU1A 2A69D 1PT1A 2JA5A 3FKIA 1I50A 2JIRA 2PJHB 4L48A 1Y1WA 1KQFA 3GTGA 4C2MA 4AZDA 2DMRA 1IW7D 4DMRA 2KQAA 4FG4A 1L8FA 3X2PA 4AONB 1K83A 2B63A 4CRYG 1PYQA 4GA5A 2E7ZA 4QIWA 1G8KA 4AAYA 2G5DA 4JCWA 1PQEA 1CZ5A 1Y1VA 3IR5A 2E2IA 5EPPA 1YNJD 5FTMA 2KI8A 2PI8A 2PMZA 1R7RA 4FERA 2IV2X 5C1BA 1WCMA 2E2HA 2VPZA 1I3QA 1PQFA 3GTJA 1PT0A 1TWAA 4KLNA 2BH0A 5FTJA 3DMRA 5B6CA 5GLXA 5T5MD 1QDNA 3SUKA 3SULA 1SMYD 1BW4A 1SFOA 3QQ8A 4ENGA 2PNWA
chains in the Genus database with same CATH topology
2AE0X 4AVRA 3X2NA 2KQAA 2ENGA 1L8FA 2HCZX 4FFTA 4FG4A 5GM9A 4JJOA 4JP6A 3X2PA 3D30A 3X2LA 2PJJA 3ENGA 2G5DA 4JS7A 2GAEA 4JCWA 3X2JA 1OA9A 4ZM7A 3M3GA 4JP7A 3SUJA 4ENGA 3X2HA 3X2OA 2PI8A 5H4UA 4FERA 1HD5A 1OA7A 2G6GA 3X2KA 2BH0A 3X2GA 4FG2A 3X2MA 4L48A 5GLXA 3SUKA 3SULA 1N10A 1WC2A 3X2IA 2PICA 1BW4A 1BW3A 3CZBA 3SUMA 2PNWA 5GLYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AE0 X;  4AVR A;  3X2N A;  2KQA A;  2ENG A;  1L8F A;  2HCZ X;  4FFT A;  4FG4 A;  5GM9 A;  4JJO A;  4JP6 A;  3X2P A;  3D30 A;  3X2L A;  2PJJ A;  3ENG A;  2G5D A;  4JS7 A;  2GAE A;  4JCW A;  3X2J A;  1OA9 A;  4ZM7 A;  3M3G A;  4JP7 A;  3SUJ A;  4ENG A;  3X2H A;  3X2O A;  2PI8 A;  5H4U A;  4FER A;  1HD5 A;  1OA7 A;  2G6G A;  3X2K A;  2BH0 A;  3X2G A;  4FG2 A;  3X2M A;  4L48 A;  5GLX A;  3SUK A;  3SUL A;  1N10 A;  1WC2 A;  3X2I A;  2PIC A;  1BW4 A;  1BW3 A;  3CZB A;  3SUM A;  2PNW A;  5GLY A; 
#chains in the Genus database with same CATH topology
 2V3V A;  3HU3 A;  3H0G A;  3X2N A;  2ENG A;  2WAQ A;  2HCZ X;  3HU2 A;  3PLX B;  1TMO A;  4JP6 A;  3D30 A;  2JIQ A;  2R92 A;  3TIW A;  1QCS A;  1E18 A;  1E60 A;  2JIM A;  1OA9 A;  4KDL A;  4KOD A;  3CF2 A;  2O5J D;  2V45 A;  2JA7 A;  1ZYR D;  3X2O A;  1CR5 A;  3QC8 A;  3GTP A;  1TWF A;  3ML1 A;  2Y0S A;  1DMS A;  4FG2 A;  3X2M A;  1G8J A;  3GTL A;  3GTK A;  2NVX A;  4KDI A;  2PIC A;  3CQZ A;  1H0H A;  3O5A A;  1BW3 A;  1YLE A;  3SUM A;  4KO8 A;  5C18 A;  1TWC A;  2AE0 X;  1E61 A;  2CW0 D;  4GA6 A;  4CS0 A;  1E5V A;  4AVR A;  2WB1 A;  2A6E D;  4NOH A;  5GM9 A;  3HKZ A;  1KQG A;  4JJO A;  2VPX A;  2VPY A;  5FTK A;  3X2L A;  2PJJ A;  3ENG A;  4CRZ A;  2NYA A;  3GTQ A;  1Y5I A;  1ZC1 A;  1Y4Z A;  1EU1 A;  1CZ4 A;  2GAE A;  4ZM7 A;  3M3G A;  5FTN A;  1DMR A;  4JP7 A;  2NVY A;  3X2H A;  4AYB A;  5H4U A;  2A68 D;  2EEO B;  5DYI A;  2R93 A;  1FDO A;  1HD5 A;  1UHD A;  2NAP A;  3GTM A;  2G6G A;  3X2K A;  1R9T A;  1PYU B;  5FTL A;  2BE5 D;  3X2G A;  1TWG A;  1H5N A;  1TWH A;  3OUG A;  1FDI A;  1N10 A;  1WC2 A;  2JIO A;  3X2I A;  3CZB A;  3IR6 A;  5T5I D;  2C45 A;  1VC3 B;  3QQ7 A;  5GLY A;  4D7Z B;  3IR7 A;  2YUJ A;  1PPY A;  1S3S A;  2JIP A;  1SIW A;  5DYG A;  2A6H D;  1E32 A;  4FFT A;  1WLF A;  4AOK B;  2JA6 A;  4RV0 A;  1R27 A;  5GLF A;  3QWZ A;  3GTO A;  1YNN D;  2VPW A;  2VUM A;  1AA6 A;  4JS7 A;  3TM7 B;  3X2J A;  1UHE A;  1OGY A;  1Q16 A;  3SUJ A;  2YU9 A;  2R7Z A;  1AW8 B;  1PQH A;  1OA7 A;  3HU1 A;  2A69 D;  1PT1 A;  2JA5 A;  3FKI A;  1I50 A;  2JIR A;  2PJH B;  4L48 A;  1Y1W A;  1KQF A;  3GTG A;  4C2M A;  4AZD A;  2DMR A;  1IW7 D;  4DMR A;  2KQA A;  4FG4 A;  1L8F A;  3X2P A;  4AON B;  1K83 A;  2B63 A;  4CRY G;  1PYQ A;  4GA5 A;  2E7Z A;  4QIW A;  1G8K A;  4AAY A;  2G5D A;  4JCW A;  1PQE A;  1CZ5 A;  1Y1V A;  3IR5 A;  2E2I A;  5EPP A;  1YNJ D;  5FTM A;  2KI8 A;  2PI8 A;  2PMZ A;  1R7R A;  4FER A;  2IV2 X;  5C1B A;  1WCM A;  2E2H A;  2VPZ A;  1I3Q A;  1PQF A;  3GTJ A;  1PT0 A;  1TWA A;  4KLN A;  2BH0 A;  5FTJ A;  3DMR A;  5B6C A;  5GLX A;  5T5M D;  1QDN A;  3SUK A;  3SUL A;  1SMY D;  1BW4 A;  1SFO A;  3QQ8 A;  4ENG A;  2PNW A; 
#chains in the Genus database with same CATH homology
 2AE0 X;  4AVR A;  3X2N A;  2KQA A;  2ENG A;  1L8F A;  2HCZ X;  4FFT A;  4FG4 A;  5GM9 A;  4JJO A;  4JP6 A;  3X2P A;  3D30 A;  3X2L A;  2PJJ A;  3ENG A;  2G5D A;  4JS7 A;  2GAE A;  4JCW A;  3X2J A;  1OA9 A;  4ZM7 A;  3M3G A;  4JP7 A;  3SUJ A;  4ENG A;  3X2H A;  3X2O A;  2PI8 A;  5H4U A;  4FER A;  1HD5 A;  1OA7 A;  2G6G A;  3X2K A;  2BH0 A;  3X2G A;  4FG2 A;  3X2M A;  4L48 A;  5GLX A;  3SUK A;  3SUL A;  1N10 A;  1WC2 A;  3X2I A;  2PIC A;  1BW4 A;  1BW3 A;  3CZB A;  3SUM A;  2PNW A;  5GLY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...