3X2PA

Neutron and x-ray joint refined structure of pccel45a with cellopentaose at 298k.
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
180
structure length
179
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TII1 (1-4)TIV1 (2-5)TIV8 (170-173)EMPTYS1 (10-18)S4 (79-87)S2 (34-38)TIV2 (21-24)TIV6 (116-119)TI1 (24-27)TII5 (154-157)AH1 (39-42)TIV4 (89-93)TI2 (51-54)TII2 (45-48)TIV7 (166-169)3H2 (160-163)S3 (56-64)TII3 (53-56)TI3 (65-68)TII4 (127-130)TI4 (68-71)AH2 (121-125)TI5 (93-96)TIV5 (94-97)TI7 (105-108)S5 (111-116)S6 (133-139)3H1 (142-144)TI8 (117-120)TI6 (99-102)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Phanerochaete chrysosporium
publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
molecule keywords Endoglucanase V-like protein
total genus 50
structure length 179
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2pA00
3X2KA 2G5DA 4FG4A 4FFTA 2PNWA 3X2JA 1WC2A 3SUMA 2ENGA 4ENGA 1BW4A 4JP7A 4JJOA 2G6GA 3X2GA 3X2MA 4FG2A 4L48A 3X2OA 2AE0X 2BH0A 2PICA 4JCWA 2PI8A 4AVRA 1N10A 3SUKA 2PJJA 2GAEA 5GLXA 1BW3A 3X2HA 3ENGA 3X2NA 5H4UA 3SUJA 3X2LA 3M3GA 1OA7A 4JS7A 4JP6A 1OA9A 4FERA 1HD5A 3SULA 4ZM7A 2KQAA 5GM9A 5GLYA 2HCZX 3X2IA 3CZBA 1L8FA 3D30A 3X2PA
chains in the Genus database with same CATH superfamily
1QDNA 1TWHA 3QQ8A 2A69D 3X2KA 1E5VA 2G5DA 3QC8A 1KQFA 2B63A 1R7RA 2A6HD 2NYAA 1IW7D 2ENGA 4AYBA 2O5JD 1H0HA 2VPXA 4KDLA 1G8KA 3CQZA 4RV0A 5FTLA 3GTLA 2G6GA 3X2GA 4L48A 2BH0A 1S3SA 4JCWA 5T5MD 3SUKA 3HU1A 1AA6A 3QWZA 3GTQA 2WAQA 1TMOA 1VC3B 2YUJA 4C2MA 5H4UA 4KLNA 2BE5D 1Y5IA 2V3VA 1PQHA 2Y0SA 4NOHA 2JIQA 1DMRA 1E18A 1R9TA 3X2IA 1E60A 4KODA 1WLFA 5FTJA 4DMRA 3IR5A 1AW8B 4GA5A 4AONB 3DMRA 1WC2A 2EEOB 1Y1WA 2V45A 2CW0D 1BW4A 2YU9A 4JP7A 1PYUB 5DYGA 3IR7A 3X2MA 2DMRA 1PYQA 3HKZA 1H5NA 2JA6A 2E2HA 2JA7A 2PI8A 1KQGA 1N10A 2JIOA 2PJJA 1BW3A 1TWGA 3X2NA 2R93A 3FKIA 2NVXA 2JA5A 1PQFA 2E7ZA 5DYIA 4CS0A 5T5ID 1CZ5A 5FTNA 2VPYA 1OA7A 4QIWA 3GTGA 4ZM7A 2R92A 1SMYD 1I50A 1K83A 5GLFA 1HD5A 3CZBA 2VPWA 2KI8A 1PT1A 5B6CA 1CZ4A 4AOKB 1Y4ZA 2VPZA 1DMSA 2PNWA 1EU1A 3X2JA 3O5AA 3SUMA 3H0GA 1TWAA 4AZDA 1SFOA 1UHEA 5C18A 4AAYA 3X2OA 4FG2A 1ZC1A 1FDOA 2JIRA 3GTJA 1E32A 1WCMA 1YNND 2C45A 1SIWA 3GTOA 3X2HA 3ENGA 4CRYG 1TWCA 2PJHB 2R7ZA 3X2LA 3GTKA 3PLXB 1TWFA 3M3GA 2VUMA 4JP6A 1OA9A 3OUGA 4FERA 1UHDA 1ZYRD 2PMZA 3SULA 4D7ZB 2KQAA 5GLYA 2HCZX 1PT0A 3D30A 1PQEA 5EPPA 3TM7B 2NVYA 5FTMA 1I3QA 4FG4A 3TIWA 1QCSA 1G8JA 4FFTA 1YLEA 3ML1A 3IR6A 2E2IA 1Y1VA 1OGYA 4CRZA 3HU3A 4ENGA 3QQ7A 4KDIA 1CR5A 4JJOA 2JIMA 2AE0X 4KO8A 2PICA 2IV2X 1E61A 4AVRA 3GTMA 1R27A 3HU2A 2GAEA 2A6ED 5GLXA 5FTKA 2JIPA 1PPYA 3CF2A 3SUJA 5C1BA 1Q16A 1FDIA 4JS7A 2NAPA 2WB1A 3GTPA 5GM9A 4GA6A 2A68D 1YNJD 1L8FA 3X2PA
chains in the Genus database with same CATH topology
3X2KA 2G5DA 4FG4A 4FFTA 2PNWA 3X2JA 1WC2A 3SUMA 2ENGA 4ENGA 1BW4A 4JP7A 4JJOA 2G6GA 3X2GA 3X2MA 4FG2A 4L48A 3X2OA 2AE0X 2BH0A 2PICA 4JCWA 2PI8A 4AVRA 1N10A 3SUKA 2PJJA 2GAEA 5GLXA 1BW3A 3X2HA 3ENGA 3X2NA 5H4UA 3SUJA 3X2LA 3M3GA 1OA7A 4JS7A 4JP6A 1OA9A 4FERA 1HD5A 3SULA 4ZM7A 2KQAA 5GM9A 5GLYA 2HCZX 3X2IA 3CZBA 1L8FA 3D30A 3X2PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X2K A;  2G5D A;  4FG4 A;  4FFT A;  2PNW A;  3X2J A;  1WC2 A;  3SUM A;  2ENG A;  4ENG A;  1BW4 A;  4JP7 A;  4JJO A;  2G6G A;  3X2G A;  3X2M A;  4FG2 A;  4L48 A;  3X2O A;  2AE0 X;  2BH0 A;  2PIC A;  4JCW A;  2PI8 A;  4AVR A;  1N10 A;  3SUK A;  2PJJ A;  2GAE A;  5GLX A;  1BW3 A;  3X2H A;  3ENG A;  3X2N A;  5H4U A;  3SUJ A;  3X2L A;  3M3G A;  1OA7 A;  4JS7 A;  4JP6 A;  1OA9 A;  4FER A;  1HD5 A;  3SUL A;  4ZM7 A;  2KQA A;  5GM9 A;  5GLY A;  2HCZ X;  3X2I A;  3CZB A;  1L8F A;  3D30 A;  3X2P A; 
#chains in the Genus database with same CATH topology
 1QDN A;  1TWH A;  3QQ8 A;  2A69 D;  3X2K A;  1E5V A;  2G5D A;  3QC8 A;  1KQF A;  2B63 A;  1R7R A;  2A6H D;  2NYA A;  1IW7 D;  2ENG A;  4AYB A;  2O5J D;  1H0H A;  2VPX A;  4KDL A;  1G8K A;  3CQZ A;  4RV0 A;  5FTL A;  3GTL A;  2G6G A;  3X2G A;  4L48 A;  2BH0 A;  1S3S A;  4JCW A;  5T5M D;  3SUK A;  3HU1 A;  1AA6 A;  3QWZ A;  3GTQ A;  2WAQ A;  1TMO A;  1VC3 B;  2YUJ A;  4C2M A;  5H4U A;  4KLN A;  2BE5 D;  1Y5I A;  2V3V A;  1PQH A;  2Y0S A;  4NOH A;  2JIQ A;  1DMR A;  1E18 A;  1R9T A;  3X2I A;  1E60 A;  4KOD A;  1WLF A;  5FTJ A;  4DMR A;  3IR5 A;  1AW8 B;  4GA5 A;  4AON B;  3DMR A;  1WC2 A;  2EEO B;  1Y1W A;  2V45 A;  2CW0 D;  1BW4 A;  2YU9 A;  4JP7 A;  1PYU B;  5DYG A;  3IR7 A;  3X2M A;  2DMR A;  1PYQ A;  3HKZ A;  1H5N A;  2JA6 A;  2E2H A;  2JA7 A;  2PI8 A;  1KQG A;  1N10 A;  2JIO A;  2PJJ A;  1BW3 A;  1TWG A;  3X2N A;  2R93 A;  3FKI A;  2NVX A;  2JA5 A;  1PQF A;  2E7Z A;  5DYI A;  4CS0 A;  5T5I D;  1CZ5 A;  5FTN A;  2VPY A;  1OA7 A;  4QIW A;  3GTG A;  4ZM7 A;  2R92 A;  1SMY D;  1I50 A;  1K83 A;  5GLF A;  1HD5 A;  3CZB A;  2VPW A;  2KI8 A;  1PT1 A;  5B6C A;  1CZ4 A;  4AOK B;  1Y4Z A;  2VPZ A;  1DMS A;  2PNW A;  1EU1 A;  3X2J A;  3O5A A;  3SUM A;  3H0G A;  1TWA A;  4AZD A;  1SFO A;  1UHE A;  5C18 A;  4AAY A;  3X2O A;  4FG2 A;  1ZC1 A;  1FDO A;  2JIR A;  3GTJ A;  1E32 A;  1WCM A;  1YNN D;  2C45 A;  1SIW A;  3GTO A;  3X2H A;  3ENG A;  4CRY G;  1TWC A;  2PJH B;  2R7Z A;  3X2L A;  3GTK A;  3PLX B;  1TWF A;  3M3G A;  2VUM A;  4JP6 A;  1OA9 A;  3OUG A;  4FER A;  1UHD A;  1ZYR D;  2PMZ A;  3SUL A;  4D7Z B;  2KQA A;  5GLY A;  2HCZ X;  1PT0 A;  3D30 A;  1PQE A;  5EPP A;  3TM7 B;  2NVY A;  5FTM A;  1I3Q A;  4FG4 A;  3TIW A;  1QCS A;  1G8J A;  4FFT A;  1YLE A;  3ML1 A;  3IR6 A;  2E2I A;  1Y1V A;  1OGY A;  4CRZ A;  3HU3 A;  4ENG A;  3QQ7 A;  4KDI A;  1CR5 A;  4JJO A;  2JIM A;  2AE0 X;  4KO8 A;  2PIC A;  2IV2 X;  1E61 A;  4AVR A;  3GTM A;  1R27 A;  3HU2 A;  2GAE A;  2A6E D;  5GLX A;  5FTK A;  2JIP A;  1PPY A;  3CF2 A;  3SUJ A;  5C1B A;  1Q16 A;  1FDI A;  4JS7 A;  2NAP A;  2WB1 A;  3GTP A;  5GM9 A;  4GA6 A;  2A68 D;  1YNJ D;  1L8F A;  3X2P A; 
#chains in the Genus database with same CATH homology
 3X2K A;  2G5D A;  4FG4 A;  4FFT A;  2PNW A;  3X2J A;  1WC2 A;  3SUM A;  2ENG A;  4ENG A;  1BW4 A;  4JP7 A;  4JJO A;  2G6G A;  3X2G A;  3X2M A;  4FG2 A;  4L48 A;  3X2O A;  2AE0 X;  2BH0 A;  2PIC A;  4JCW A;  2PI8 A;  4AVR A;  1N10 A;  3SUK A;  2PJJ A;  2GAE A;  5GLX A;  1BW3 A;  3X2H A;  3ENG A;  3X2N A;  5H4U A;  3SUJ A;  3X2L A;  3M3G A;  1OA7 A;  4JS7 A;  4JP6 A;  1OA9 A;  4FER A;  1HD5 A;  3SUL A;  4ZM7 A;  2KQA A;  5GM9 A;  5GLY A;  2HCZ X;  3X2I A;  3CZB A;  1L8F A;  3D30 A;  3X2P A; 
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