3X2PA

Neutron and x-ray joint refined structure of pccel45a with cellopentaose at 298k.
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
180
structure length
179
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
molecule tags Hydrolase
source organism Phanerochaete chrysosporium
molecule keywords Endoglucanase V-like protein
total genus 50
structure length 179
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2pA00
3X2OA 4L48A 4FFTA 2PICA 2G5DA 4JS7A 2HCZX 2PI8A 4JP7A 1L8FA 1OA9A 3X2PA 4JP6A 4JJOA 3SUKA 3X2KA 1OA7A 4ZM7A 1BW4A 1HD5A 1BW3A 2PNWA 2BH0A 3X2HA 3X2NA 2KQAA 3ENGA 3X2IA 4JCWA 3CZBA 3X2LA 5GLYA 2ENGA 1WC2A 5GM9A 3SUJA 2AE0X 5GLXA 3X2MA 4AVRA 5H4UA 3X2JA 4FERA 4FG2A 3SUMA 2GAEA 3X2GA 1N10A 4FG4A 4ENGA 3M3GA 3SULA 2G6GA 2PJJA 3D30A
chains in the Genus database with same CATH superfamily
2NAPA 2WB1A 1SIWA 1QDNA 2Y0SA 1FDIA 1VC3B 2C45A 2A6HD 2DMRA 1R7RA 2JIMA 3DMRA 3QQ7A 2HCZX 4JP6A 1E18A 2CW0D 4RV0A 1OA7A 1QCSA 3SUKA 3X2KA 4ZM7A 2VPXA 2A68D 2KQAA 3ENGA 2KI8A 1G8JA 3QC8A 5FTJA 5GLYA 3X2LA 1H0HA 2JA5A 2ENGA 1WC2A 4GA6A 2V3VA 3SUJA 3HU3A 1AW8B 3ML1A 3TIWA 1UHEA 4AVRA 1Q16A 3GTLA 3QWZA 3TM7B 5FTLA 2BE5D 4QIWA 4CS0A 2NVXA 3SUMA 4GA5A 2GAEA 3X2GA 3PLXB 2A6ED 4FG4A 2G6GA 2PJJA 2YU9A 3GTJA 1Y1VA 4KDIA 1E32A 5C18A 4FFTA 4KLNA 1TMOA 2PICA 1PQEA 3GTPA 1ZYRD 1PQHA 3IR5A 2IV2X 4JS7A 3GTKA 5C1BA 3HU1A 1OA9A 5GLFA 1OGYA 1YLEA 4JJOA 3CQZA 1BW3A 4KO8A 1K83A 4AOKB 2VPZA 1R27A 2BH0A 1S3SA 1CR5A 2VPYA 2PJHB 1Y1WA 1PQFA 3SULA 4AZDA 3HKZA 4D7ZB 1YNJD 4DMRA 2R92A 1I3QA 1E61A 2E2IA 5H4UA 3H0GA 2VPWA 2JIQA 2JA6A 1SFOA 1IW7D 1KQFA 4CRYG 4AYBA 1N10A 1TWAA 4ENGA 4FERA 3D30A 3X2OA 4L48A 1I50A 1PT0A 4KODA 1ZC1A 5B6CA 2NVYA 3IR6A 1SMYD 4NOHA 4AONB 2YUJA 2G5DA 1PYUB 1FDOA 1TWGA 2R7ZA 1L8FA 1Y5IA 2PMZA 3X2PA 1CZ5A 4C2MA 2V45A 3HU2A 1AA6A 3GTGA 3GTQA 4KDLA 2JIRA 5DYIA 3X2NA 5FTNA 4JCWA 3CZBA 3CF2A 4AAYA 5T5ID 3QQ8A 3X2MA 2AE0X 2JA7A 1TWCA 5T5MD 3OUGA 3O5AA 1TWHA 5FTKA 1G8KA 2R93A 1E5VA 2EEOB 2A69D 5FTMA 3M3GA 1HD5A 1E60A 1UHDA 1TWFA 1PPYA 1PT1A 1WCMA 1Y4ZA 1WLFA 2JIPA 2PI8A 2B63A 4JP7A 2NYAA 3FKIA 3GTMA 1BW4A 4CRZA 3GTOA 3IR7A 1R9TA 2PNWA 1YNND 3X2HA 3X2IA 2VUMA 2JIOA 2O5JD 1EU1A 5EPPA 5GM9A 5GLXA 2WAQA 1H5NA 3X2JA 1CZ4A 1KQGA 4FG2A 1DMRA 1DMSA 1PYQA 2E7ZA 2E2HA 5DYGA
chains in the Genus database with same CATH topology
3X2OA 4L48A 4FFTA 2PICA 2G5DA 4JS7A 2HCZX 2PI8A 4JP7A 1L8FA 1OA9A 3X2PA 4JP6A 4JJOA 3SUKA 3X2KA 1OA7A 4ZM7A 1BW4A 1HD5A 1BW3A 2PNWA 2BH0A 3X2HA 3X2NA 2KQAA 3ENGA 3X2IA 4JCWA 3CZBA 3X2LA 5GLYA 2ENGA 1WC2A 5GM9A 3SUJA 2AE0X 5GLXA 3X2MA 4AVRA 5H4UA 3X2JA 4FERA 4FG2A 3SUMA 2GAEA 3X2GA 1N10A 4FG4A 4ENGA 3M3GA 3SULA 2G6GA 2PJJA 3D30A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X2O A;  4L48 A;  4FFT A;  2PIC A;  2G5D A;  4JS7 A;  2HCZ X;  2PI8 A;  4JP7 A;  1L8F A;  1OA9 A;  3X2P A;  4JP6 A;  4JJO A;  3SUK A;  3X2K A;  1OA7 A;  4ZM7 A;  1BW4 A;  1HD5 A;  1BW3 A;  2PNW A;  2BH0 A;  3X2H A;  3X2N A;  2KQA A;  3ENG A;  3X2I A;  4JCW A;  3CZB A;  3X2L A;  5GLY A;  2ENG A;  1WC2 A;  5GM9 A;  3SUJ A;  2AE0 X;  5GLX A;  3X2M A;  4AVR A;  5H4U A;  3X2J A;  4FER A;  4FG2 A;  3SUM A;  2GAE A;  3X2G A;  1N10 A;  4FG4 A;  4ENG A;  3M3G A;  3SUL A;  2G6G A;  2PJJ A;  3D30 A; 
#chains in the Genus database with same CATH topology
 2NAP A;  2WB1 A;  1SIW A;  1QDN A;  2Y0S A;  1FDI A;  1VC3 B;  2C45 A;  2A6H D;  2DMR A;  1R7R A;  2JIM A;  3DMR A;  3QQ7 A;  2HCZ X;  4JP6 A;  1E18 A;  2CW0 D;  4RV0 A;  1OA7 A;  1QCS A;  3SUK A;  3X2K A;  4ZM7 A;  2VPX A;  2A68 D;  2KQA A;  3ENG A;  2KI8 A;  1G8J A;  3QC8 A;  5FTJ A;  5GLY A;  3X2L A;  1H0H A;  2JA5 A;  2ENG A;  1WC2 A;  4GA6 A;  2V3V A;  3SUJ A;  3HU3 A;  1AW8 B;  3ML1 A;  3TIW A;  1UHE A;  4AVR A;  1Q16 A;  3GTL A;  3QWZ A;  3TM7 B;  5FTL A;  2BE5 D;  4QIW A;  4CS0 A;  2NVX A;  3SUM A;  4GA5 A;  2GAE A;  3X2G A;  3PLX B;  2A6E D;  4FG4 A;  2G6G A;  2PJJ A;  2YU9 A;  3GTJ A;  1Y1V A;  4KDI A;  1E32 A;  5C18 A;  4FFT A;  4KLN A;  1TMO A;  2PIC A;  1PQE A;  3GTP A;  1ZYR D;  1PQH A;  3IR5 A;  2IV2 X;  4JS7 A;  3GTK A;  5C1B A;  3HU1 A;  1OA9 A;  5GLF A;  1OGY A;  1YLE A;  4JJO A;  3CQZ A;  1BW3 A;  4KO8 A;  1K83 A;  4AOK B;  2VPZ A;  1R27 A;  2BH0 A;  1S3S A;  1CR5 A;  2VPY A;  2PJH B;  1Y1W A;  1PQF A;  3SUL A;  4AZD A;  3HKZ A;  4D7Z B;  1YNJ D;  4DMR A;  2R92 A;  1I3Q A;  1E61 A;  2E2I A;  5H4U A;  3H0G A;  2VPW A;  2JIQ A;  2JA6 A;  1SFO A;  1IW7 D;  1KQF A;  4CRY G;  4AYB A;  1N10 A;  1TWA A;  4ENG A;  4FER A;  3D30 A;  3X2O A;  4L48 A;  1I50 A;  1PT0 A;  4KOD A;  1ZC1 A;  5B6C A;  2NVY A;  3IR6 A;  1SMY D;  4NOH A;  4AON B;  2YUJ A;  2G5D A;  1PYU B;  1FDO A;  1TWG A;  2R7Z A;  1L8F A;  1Y5I A;  2PMZ A;  3X2P A;  1CZ5 A;  4C2M A;  2V45 A;  3HU2 A;  1AA6 A;  3GTG A;  3GTQ A;  4KDL A;  2JIR A;  5DYI A;  3X2N A;  5FTN A;  4JCW A;  3CZB A;  3CF2 A;  4AAY A;  5T5I D;  3QQ8 A;  3X2M A;  2AE0 X;  2JA7 A;  1TWC A;  5T5M D;  3OUG A;  3O5A A;  1TWH A;  5FTK A;  1G8K A;  2R93 A;  1E5V A;  2EEO B;  2A69 D;  5FTM A;  3M3G A;  1HD5 A;  1E60 A;  1UHD A;  1TWF A;  1PPY A;  1PT1 A;  1WCM A;  1Y4Z A;  1WLF A;  2JIP A;  2PI8 A;  2B63 A;  4JP7 A;  2NYA A;  3FKI A;  3GTM A;  1BW4 A;  4CRZ A;  3GTO A;  3IR7 A;  1R9T A;  2PNW A;  1YNN D;  3X2H A;  3X2I A;  2VUM A;  2JIO A;  2O5J D;  1EU1 A;  5EPP A;  5GM9 A;  5GLX A;  2WAQ A;  1H5N A;  3X2J A;  1CZ4 A;  1KQG A;  4FG2 A;  1DMR A;  1DMS A;  1PYQ A;  2E7Z A;  2E2H A;  5DYG A; 
#chains in the Genus database with same CATH homology
 3X2O A;  4L48 A;  4FFT A;  2PIC A;  2G5D A;  4JS7 A;  2HCZ X;  2PI8 A;  4JP7 A;  1L8F A;  1OA9 A;  3X2P A;  4JP6 A;  4JJO A;  3SUK A;  3X2K A;  1OA7 A;  4ZM7 A;  1BW4 A;  1HD5 A;  1BW3 A;  2PNW A;  2BH0 A;  3X2H A;  3X2N A;  2KQA A;  3ENG A;  3X2I A;  4JCW A;  3CZB A;  3X2L A;  5GLY A;  2ENG A;  1WC2 A;  5GM9 A;  3SUJ A;  2AE0 X;  5GLX A;  3X2M A;  4AVR A;  5H4U A;  3X2J A;  4FER A;  4FG2 A;  3SUM A;  2GAE A;  3X2G A;  1N10 A;  4FG4 A;  4ENG A;  3M3G A;  3SUL A;  2G6G A;  2PJJ A;  3D30 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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