4AVR | Genus

Total Genus 34

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	94
structure length	94
Chain Sequence	MDTGEASYYGSRHAGLRTASGERYNPNAMTAAHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIESL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Pseudomonas aeruginosa pa01
publication title	The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery. pubmed doi rcsb
molecule keywords	PA4485
total genus	34
structure length	94
sequence length	94
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-05-29

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.40.10	Mainly Beta	Beta Barrel	Barwin-like endoglucanases	RlpA-like domain	4avrA00

2GAEA 4FG4A 1L8FA 2G5DA 1OA9A 3M3GA 3X2LA 1BW4A 3X2KA 4JCWA 2PI8A 4JP7A 4FERA 2PICA 3X2PA 4AVRA 1N10A 3D30A 3X2IA 2G6GA 4JJOA 2BH0A 5GM9A 3X2HA 2AE0X 5H4UA 2ENGA 3CZBA 1HD5A 4JS7A 3SULA 4ZM7A 2PJJA 4FG2A 4ENGA 4FFTA 3X2NA 3X2OA 5GLYA 3X2MA 1BW3A 5GLXA 3ENGA 2PNWA 4JP6A 1OA7A 3X2GA 4L48A 2HCZX 3SUKA 3SUJA 1WC2A 3X2JA 3SUMA 2KQAA
chains in the Genus database with same CATH superfamily

3QQ7A 1OA9A 1QCSA 2B63A 1SIWA 2JA7A 4KODA 4JCWA 2PI8A 1PQFA 2JA5A 2JIQA 1R27A 4AVRA 5FTLA 5FTKA 3X2HA 2ENGA 3CZBA 1HD5A 2EEOB 3HKZA 4FFTA 3X2OA 1WCMA 4GA5A 1PQHA 2JIOA 4KDLA 4AOKB 1E5VA 1TMOA 3ENGA 4RV0A 3GTQA 3X2GA 5B6CA 5FTMA 1SFOA 1DMRA 1E32A 2YUJA 5C1BA 2PMZA 2Y0SA 2E2HA 4FG4A 1L8FA 1G8JA 3M3GA 3IR5A 4AAYA 3X2LA 4JP7A 2CW0D 3H0GA 5FTNA 3GTJA 3DMRA 3QC8A 1Y4ZA 3PLXB 1ZYRD 3X2PA 1KQGA 1E61A 1EU1A 2A6ED 1YNND 2G6GA 5T5ID 3GTKA 2AE0X 2A6HD 4KLNA 2JIPA 4D7ZB 4ZM7A 1VC3B 1Q16A 4C2MA 2NVYA 3X2NA 2E2IA 3X2MA 5GLXA 1OA7A 1DMSA 3ML1A 3X2JA 3HU1A 2KQAA 1H5NA 1TWCA 1UHEA 5DYGA 2A68D 2V45A 2R93A 2R7ZA 1CZ5A 3FKIA 1R9TA 4GA6A 1BW4A 2VPZA 2V3VA 4FERA 1CR5A 2PICA 2C45A 1CZ4A 1N10A 3D30A 3X2IA 1PT0A 4AYBA 1AA6A 4JJOA 5DYIA 2BH0A 5GM9A 4CRYG 1I3QA 2YU9A 1YLEA 2PJHB 5H4UA 2E7ZA 1E18A 5C18A 4JS7A 3SULA 3IR6A 2PJJA 4FG2A 1E60A 3CF2A 4ENGA 2BE5D 1SMYD 1G8KA 3QQ8A 4KO8A 1K83A 1YNJD 5GLYA 1PYUB 2VPXA 1FDOA 4CS0A 3O5AA 1TWHA 2JIMA 2PNWA 3GTPA 4JP6A 1ZC1A 5EPPA 3GTOA 4L48A 1TWAA 2HCZX 3GTGA 1S3SA 2NYAA 2VPWA 2GAEA 1TWGA 1Y5IA 1PYQA 4DMRA 3GTLA 3IR7A 3QWZA 2G5DA 2DMRA 3OUGA 2JA6A 5T5MD 1KQFA 1Y1WA 3X2KA 4CRZA 1PPYA 1WLFA 2KI8A 2NAPA 4KDIA 1Y1VA 2NVXA 1QDNA 1H0HA 4QIWA 3TIWA 4AZDA 1PT1A 3TM7B 1R7RA 3CQZA 1FDIA 5FTJA 4AONB 1UHDA 1TWFA 2WAQA 2O5JD 1IW7D 4NOHA 2VPYA 5GLFA 2WB1A 3HU3A 1BW3A 2R92A 1OGYA 2A69D 3GTMA 1PQEA 2IV2X 3SUJA 3SUKA 1I50A 1WC2A 2VUMA 2JIRA 1AW8B 3SUMA 3HU2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2GAE A;  4FG4 A;  1L8F A;  2G5D A;  1OA9 A;  3M3G A;  3X2L A;  1BW4 A;  3X2K A;  4JCW A;  2PI8 A;  4JP7 A;  4FER A;  2PIC A;  3X2P A;  4AVR A;  1N10 A;  3D30 A;  3X2I A;  2G6G A;  4JJO A;  2BH0 A;  5GM9 A;  3X2H A;  2AE0 X;  5H4U A;  2ENG A;  3CZB A;  1HD5 A;  4JS7 A;  3SUL A;  4ZM7 A;  2PJJ A;  4FG2 A;  4ENG A;  4FFT A;  3X2N A;  3X2O A;  5GLY A;  3X2M A;  1BW3 A;  5GLX A;  3ENG A;  2PNW A;  4JP6 A;  1OA7 A;  3X2G A;  4L48 A;  2HCZ X;  3SUK A;  3SUJ A;  1WC2 A;  3X2J A;  3SUM A;  2KQA A; 
#chains in the Genus database with same CATH topology
 3QQ7 A;  1OA9 A;  1QCS A;  2B63 A;  1SIW A;  2JA7 A;  4KOD A;  4JCW A;  2PI8 A;  1PQF A;  2JA5 A;  2JIQ A;  1R27 A;  4AVR A;  5FTL A;  5FTK A;  3X2H A;  2ENG A;  3CZB A;  1HD5 A;  2EEO B;  3HKZ A;  4FFT A;  3X2O A;  1WCM A;  4GA5 A;  1PQH A;  2JIO A;  4KDL A;  4AOK B;  1E5V A;  1TMO A;  3ENG A;  4RV0 A;  3GTQ A;  3X2G A;  5B6C A;  5FTM A;  1SFO A;  1DMR A;  1E32 A;  2YUJ A;  5C1B A;  2PMZ A;  2Y0S A;  2E2H A;  4FG4 A;  1L8F A;  1G8J A;  3M3G A;  3IR5 A;  4AAY A;  3X2L A;  4JP7 A;  2CW0 D;  3H0G A;  5FTN A;  3GTJ A;  3DMR A;  3QC8 A;  1Y4Z A;  3PLX B;  1ZYR D;  3X2P A;  1KQG A;  1E61 A;  1EU1 A;  2A6E D;  1YNN D;  2G6G A;  5T5I D;  3GTK A;  2AE0 X;  2A6H D;  4KLN A;  2JIP A;  4D7Z B;  4ZM7 A;  1VC3 B;  1Q16 A;  4C2M A;  2NVY A;  3X2N A;  2E2I A;  3X2M A;  5GLX A;  1OA7 A;  1DMS A;  3ML1 A;  3X2J A;  3HU1 A;  2KQA A;  1H5N A;  1TWC A;  1UHE A;  5DYG A;  2A68 D;  2V45 A;  2R93 A;  2R7Z A;  1CZ5 A;  3FKI A;  1R9T A;  4GA6 A;  1BW4 A;  2VPZ A;  2V3V A;  4FER A;  1CR5 A;  2PIC A;  2C45 A;  1CZ4 A;  1N10 A;  3D30 A;  3X2I A;  1PT0 A;  4AYB A;  1AA6 A;  4JJO A;  5DYI A;  2BH0 A;  5GM9 A;  4CRY G;  1I3Q A;  2YU9 A;  1YLE A;  2PJH B;  5H4U A;  2E7Z A;  1E18 A;  5C18 A;  4JS7 A;  3SUL A;  3IR6 A;  2PJJ A;  4FG2 A;  1E60 A;  3CF2 A;  4ENG A;  2BE5 D;  1SMY D;  1G8K A;  3QQ8 A;  4KO8 A;  1K83 A;  1YNJ D;  5GLY A;  1PYU B;  2VPX A;  1FDO A;  4CS0 A;  3O5A A;  1TWH A;  2JIM A;  2PNW A;  3GTP A;  4JP6 A;  1ZC1 A;  5EPP A;  3GTO A;  4L48 A;  1TWA A;  2HCZ X;  3GTG A;  1S3S A;  2NYA A;  2VPW A;  2GAE A;  1TWG A;  1Y5I A;  1PYQ A;  4DMR A;  3GTL A;  3IR7 A;  3QWZ A;  2G5D A;  2DMR A;  3OUG A;  2JA6 A;  5T5M D;  1KQF A;  1Y1W A;  3X2K A;  4CRZ A;  1PPY A;  1WLF A;  2KI8 A;  2NAP A;  4KDI A;  1Y1V A;  2NVX A;  1QDN A;  1H0H A;  4QIW A;  3TIW A;  4AZD A;  1PT1 A;  3TM7 B;  1R7R A;  3CQZ A;  1FDI A;  5FTJ A;  4AON B;  1UHD A;  1TWF A;  2WAQ A;  2O5J D;  1IW7 D;  4NOH A;  2VPY A;  5GLF A;  2WB1 A;  3HU3 A;  1BW3 A;  2R92 A;  1OGY A;  2A69 D;  3GTM A;  1PQE A;  2IV2 X;  3SUJ A;  3SUK A;  1I50 A;  1WC2 A;  2VUM A;  2JIR A;  1AW8 B;  3SUM A;  3HU2 A; 
#chains in the Genus database with same CATH homology
 2GAE A;  4FG4 A;  1L8F A;  2G5D A;  1OA9 A;  3M3G A;  3X2L A;  1BW4 A;  3X2K A;  4JCW A;  2PI8 A;  4JP7 A;  4FER A;  2PIC A;  3X2P A;  4AVR A;  1N10 A;  3D30 A;  3X2I A;  2G6G A;  4JJO A;  2BH0 A;  5GM9 A;  3X2H A;  2AE0 X;  5H4U A;  2ENG A;  3CZB A;  1HD5 A;  4JS7 A;  3SUL A;  4ZM7 A;  2PJJ A;  4FG2 A;  4ENG A;  4FFT A;  3X2N A;  3X2O A;  5GLY A;  3X2M A;  1BW3 A;  5GLX A;  3ENG A;  2PNW A;  4JP6 A;  1OA7 A;  3X2G A;  4L48 A;  2HCZ X;  3SUK A;  3SUJ A;  1WC2 A;  3X2J A;  3SUM A;  2KQA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4AVRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN