4AZDA

T57v mutant of aspartate decarboxylase
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
122
structure length
122
Chain Sequence
VPRGSMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-15)TII2 (39-42)TIV3 (109-112)S2 (17-19)S7 (83-94)EMPTYS3 (27-29)3H1 (74-77)AH1 (30-36)S4 (42-48)S6 (69-72)TIV2 (48-51)TI2 (49-52)S5 (54-62)TII4 (80-83)AH2 (95-100)S8 (104-109)S9 (113-115)TI1 (19-22)TII3 (63-66)Updating...
connected with : NaN
molecule tags Lyase
source organism Escherichia coli
publication title Threonine 57 is Required for the Post-Translational Activation of Escherichia Coli Aspartate Alpha-Decarboxylase
pubmed doi rcsb
molecule keywords ASPARTATE 1-DECARBOXYLASE
total genus 35
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2012-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4azdA00
2JIRA 3TIWA 2C45A 3IR5A 3IR6A 3GTGA 1Y1WA 2E7ZA 5C1BA 1S3SA 1PT1A 2EEOB 4KDLA 5T5MD 1PT0A 3OUGA 4GA6A 1IW7D 1Q16A 3FKIA 2IV2X 2NYAA 1Y4ZA 3QWZA 5FTKA 2E2HA 1CR5A 1CZ4A 4GA5A 3O5AA 3HU3A 3GTLA 1I3QA 1E60A 4C2MA 1TMOA 3TM7B 2NVYA 1WCMA 2E2IA 3GTOA 3QC8A 2R92A 5T5ID 2R7ZA 4KO8A 1TWAA 2R93A 1QDNA 3HKZA 2B63A 1E18A 3QQ7A 1AA6A 1UHEA 1E32A 5C18A 1TWHA 5FTNA 2PJHB 3GTJA 2JA6A 1TWCA 4DMRA 2JIOA 1SIWA 1TWGA 1G8JA 1Y1VA 1KQGA 2NVXA 4CS0A 2KI8A 3CF2A 1K83A 2VPWA 1OGYA 4CRYG 5GLFA 1PQFA 1E61A 3ML1A 4KODA 5DYGA 1CZ5A 2VPYA 4AZDA 1PYUB 1UHDA 1PQEA 1DMSA 5EPPA 1SFOA 1I50A 1KQFA 3CQZA 1H0HA 3DMRA 3GTQA 1FDOA 3GTKA 3H0GA 2JIMA 1R7RA 1PYQA 1WLFA 2VPZA 1DMRA 3GTMA 4KDIA 1PPYA 1QCSA 1G8KA 4RV0A 1R27A 2VUMA 2NAPA 4D7ZB 2JA5A 4KLNA 1EU1A 3IR7A 1PQHA 1VC3B 2JIQA 1Y5IA 2V3VA 2YU9A 3GTPA 2WAQA 1E5VA 4AYBA 1R9TA 3HU1A 1TWFA 2DMRA 5DYIA 2V45A 1AW8B 4AAYA 2PMZA 1YLEA 2WB1A 3PLXB 5FTMA 2JA7A 4CRZA 2JIPA 2Y0SA 2VPXA 5FTJA 4AOKB 4QIWA 4AONB 1H5NA 3QQ8A 5B6CA 3HU2A 1FDIA 5FTLA
chains in the Genus database with same CATH superfamily
2JIRA 3TIWA 2C45A 3IR5A 3IR6A 2G6GA 3GTGA 1Y1WA 2E7ZA 2HCZX 5C1BA 4JCWA 1S3SA 1PT1A 2EEOB 4KDLA 5T5MD 1PT0A 3OUGA 4GA6A 1IW7D 1Q16A 3FKIA 2IV2X 2NYAA 1Y4ZA 3QWZA 5FTKA 2E2HA 1CR5A 1CZ4A 2ENGA 2PICA 3O5AA 4GA5A 4ENGA 1N10A 3SUKA 3HU3A 4FG4A 3GTLA 4FFTA 1I3QA 1E60A 4C2MA 1TMOA 3TM7B 2A6ED 2NVYA 3X2MA 3CZBA 2KQAA 1WCMA 2E2IA 3GTOA 3QC8A 2R92A 2PI8A 5T5ID 2R7ZA 4KO8A 1TWAA 2R93A 1QDNA 3HKZA 2B63A 1E18A 3QQ7A 1AA6A 1UHEA 1E32A 5C18A 5GLYA 1TWHA 5FTNA 4JS7A 2PJHB 3GTJA 2JA6A 1TWCA 4DMRA 2JIOA 1SIWA 4AVRA 1TWGA 1G8JA 1Y1VA 2GAEA 1KQGA 2NVXA 4CS0A 2G5DA 2KI8A 3CF2A 4JP6A 1K83A 2A6HD 2VPWA 1OGYA 4CRYG 1L8FA 5GLFA 1PQFA 1E61A 3ML1A 4KODA 5DYGA 1CZ5A 2VPYA 3X2KA 4AZDA 1BW4A 1PYUB 1UHDA 1PQEA 1DMSA 1HD5A 3D30A 5EPPA 3X2GA 5GM9A 1WC2A 3X2PA 4ZM7A 1KQFA 1I50A 1SFOA 3M3GA 3CQZA 1H0HA 3DMRA 3GTQA 1FDOA 3X2IA 3GTKA 2A68D 2O5JD 1OA7A 3H0GA 1BW3A 2JIMA 3X2HA 1R7RA 1PYQA 1WLFA 5FTLA 2VPZA 1DMRA 3SUMA 2AE0X 4FERA 3GTMA 4KDIA 1PPYA 1QCSA 1G8KA 4RV0A 1R27A 2VUMA 3SULA 2NAPA 4D7ZB 2PJJA 2JA5A 4JP7A 4KLNA 1EU1A 3IR7A 1PQHA 1VC3B 2BH0A 2JIQA 1Y5IA 2V3VA 2YU9A 3GTPA 2WAQA 1E5VA 4AYBA 1R9TA 1OA9A 2A69D 2CW0D 3HU1A 3ENGA 1TWFA 1ZYRD 4NOHA 2DMRA 4JJOA 2V45A 1AW8B 5DYIA 4AAYA 2PMZA 1YLEA 2WB1A 3PLXB 1ZC1A 3X2JA 2YUJA 1YNJD 4L48A 5FTMA 5GLXA 2BE5D 2JA7A 2PNWA 5H4UA 4CRZA 1SMYD 3X2NA 2JIPA 2Y0SA 2VPXA 5FTJA 4AOKB 3SUJA 4QIWA 4AONB 3X2OA 1H5NA 3QQ8A 5B6CA 3HU2A 1YNND 4FG2A 1FDIA 3X2LA
chains in the Genus database with same CATH topology
2JIRA 3TIWA 2C45A 3IR5A 3IR6A 2G6GA 3GTGA 1Y1WA 2E7ZA 5C1BA 1S3SA 1PT1A 2EEOB 4KDLA 5T5MD 1PT0A 3OUGA 4GA6A 1IW7D 1Q16A 3FKIA 2IV2X 2NYAA 1Y4ZA 3QWZA 5FTKA 2E2HA 1CR5A 1CZ4A 2PICA 3O5AA 4GA5A 3HU3A 3GTLA 1I3QA 1E60A 4C2MA 1TMOA 3TM7B 2A6ED 2NVYA 3CZBA 1WCMA 2E2IA 3GTOA 3QC8A 2R92A 2PI8A 5T5ID 2R7ZA 4KO8A 1TWAA 2R93A 1QDNA 3HKZA 2B63A 1E18A 3QQ7A 1AA6A 1UHEA 1E32A 5C18A 1TWHA 5FTNA 2PJHB 3GTJA 2JA6A 1TWCA 4DMRA 2JIOA 1SIWA 1TWGA 1G8JA 1Y1VA 2GAEA 1KQGA 2NVXA 4CS0A 2G5DA 2KI8A 3CF2A 1K83A 2A6HD 2VPWA 1OGYA 4CRYG 5GLFA 1PQFA 1E61A 3ML1A 4KODA 5DYGA 1CZ5A 2VPYA 4AZDA 1PYUB 1UHDA 1PQEA 1DMSA 5EPPA 1SFOA 1I50A 1KQFA 3CQZA 1H0HA 3DMRA 3GTQA 1FDOA 3GTKA 2A68D 2O5JD 3H0GA 2JIMA 1R7RA 1PYQA 1WLFA 2VPZA 1DMRA 2AE0X 3GTMA 4KDIA 1PPYA 1QCSA 1G8KA 4RV0A 1R27A 2VUMA 2NAPA 4D7ZB 2PJJA 2JA5A 4KLNA 1EU1A 3IR7A 1PQHA 1VC3B 2JIQA 1Y5IA 2V3VA 2YU9A 3GTPA 2WAQA 1E5VA 4AYBA 1R9TA 2A69D 2CW0D 3HU1A 1TWFA 1ZYRD 4NOHA 2DMRA 5DYIA 2V45A 1AW8B 4AAYA 2PMZA 1YLEA 2WB1A 3PLXB 1ZC1A 2YUJA 1YNJD 5FTMA 2BE5D 2JA7A 2PNWA 4CRZA 1SMYD 2JIPA 2Y0SA 2VPXA 5FTJA 4AOKB 4QIWA 4AONB 1H5NA 3QQ8A 5B6CA 3HU2A 1YNND 1FDIA 5FTLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JIR A;  3TIW A;  2C45 A;  3IR5 A;  3IR6 A;  3GTG A;  1Y1W A;  2E7Z A;  5C1B A;  1S3S A;  1PT1 A;  2EEO B;  4KDL A;  5T5M D;  1PT0 A;  3OUG A;  4GA6 A;  1IW7 D;  1Q16 A;  3FKI A;  2IV2 X;  2NYA A;  1Y4Z A;  3QWZ A;  5FTK A;  2E2H A;  1CR5 A;  1CZ4 A;  4GA5 A;  3O5A A;  3HU3 A;  3GTL A;  1I3Q A;  1E60 A;  4C2M A;  1TMO A;  3TM7 B;  2NVY A;  1WCM A;  2E2I A;  3GTO A;  3QC8 A;  2R92 A;  5T5I D;  2R7Z A;  4KO8 A;  1TWA A;  2R93 A;  1QDN A;  3HKZ A;  2B63 A;  1E18 A;  3QQ7 A;  1AA6 A;  1UHE A;  1E32 A;  5C18 A;  1TWH A;  5FTN A;  2PJH B;  3GTJ A;  2JA6 A;  1TWC A;  4DMR A;  2JIO A;  1SIW A;  1TWG A;  1G8J A;  1Y1V A;  1KQG A;  2NVX A;  4CS0 A;  2KI8 A;  3CF2 A;  1K83 A;  2VPW A;  1OGY A;  4CRY G;  5GLF A;  1PQF A;  1E61 A;  3ML1 A;  4KOD A;  5DYG A;  1CZ5 A;  2VPY A;  4AZD A;  1PYU B;  1UHD A;  1PQE A;  1DMS A;  5EPP A;  1SFO A;  1I50 A;  1KQF A;  3CQZ A;  1H0H A;  3DMR A;  3GTQ A;  1FDO A;  3GTK A;  3H0G A;  2JIM A;  1R7R A;  1PYQ A;  1WLF A;  2VPZ A;  1DMR A;  3GTM A;  4KDI A;  1PPY A;  1QCS A;  1G8K A;  4RV0 A;  1R27 A;  2VUM A;  2NAP A;  4D7Z B;  2JA5 A;  4KLN A;  1EU1 A;  3IR7 A;  1PQH A;  1VC3 B;  2JIQ A;  1Y5I A;  2V3V A;  2YU9 A;  3GTP A;  2WAQ A;  1E5V A;  4AYB A;  1R9T A;  3HU1 A;  1TWF A;  2DMR A;  5DYI A;  2V45 A;  1AW8 B;  4AAY A;  2PMZ A;  1YLE A;  2WB1 A;  3PLX B;  5FTM A;  2JA7 A;  4CRZ A;  2JIP A;  2Y0S A;  2VPX A;  5FTJ A;  4AOK B;  4QIW A;  4AON B;  1H5N A;  3QQ8 A;  5B6C A;  3HU2 A;  1FDI A;  5FTL A; 
#chains in the Genus database with same CATH topology
 2JIR A;  3TIW A;  2C45 A;  3IR5 A;  3IR6 A;  2G6G A;  3GTG A;  1Y1W A;  2E7Z A;  2HCZ X;  5C1B A;  4JCW A;  1S3S A;  1PT1 A;  2EEO B;  4KDL A;  5T5M D;  1PT0 A;  3OUG A;  4GA6 A;  1IW7 D;  1Q16 A;  3FKI A;  2IV2 X;  2NYA A;  1Y4Z A;  3QWZ A;  5FTK A;  2E2H A;  1CR5 A;  1CZ4 A;  2ENG A;  2PIC A;  3O5A A;  4GA5 A;  4ENG A;  1N10 A;  3SUK A;  3HU3 A;  4FG4 A;  3GTL A;  4FFT A;  1I3Q A;  1E60 A;  4C2M A;  1TMO A;  3TM7 B;  2A6E D;  2NVY A;  3X2M A;  3CZB A;  2KQA A;  1WCM A;  2E2I A;  3GTO A;  3QC8 A;  2R92 A;  2PI8 A;  5T5I D;  2R7Z A;  4KO8 A;  1TWA A;  2R93 A;  1QDN A;  3HKZ A;  2B63 A;  1E18 A;  3QQ7 A;  1AA6 A;  1UHE A;  1E32 A;  5C18 A;  5GLY A;  1TWH A;  5FTN A;  4JS7 A;  2PJH B;  3GTJ A;  2JA6 A;  1TWC A;  4DMR A;  2JIO A;  1SIW A;  4AVR A;  1TWG A;  1G8J A;  1Y1V A;  2GAE A;  1KQG A;  2NVX A;  4CS0 A;  2G5D A;  2KI8 A;  3CF2 A;  4JP6 A;  1K83 A;  2A6H D;  2VPW A;  1OGY A;  4CRY G;  1L8F A;  5GLF A;  1PQF A;  1E61 A;  3ML1 A;  4KOD A;  5DYG A;  1CZ5 A;  2VPY A;  3X2K A;  4AZD A;  1BW4 A;  1PYU B;  1UHD A;  1PQE A;  1DMS A;  1HD5 A;  3D30 A;  5EPP A;  3X2G A;  5GM9 A;  1WC2 A;  3X2P A;  4ZM7 A;  1KQF A;  1I50 A;  1SFO A;  3M3G A;  3CQZ A;  1H0H A;  3DMR A;  3GTQ A;  1FDO A;  3X2I A;  3GTK A;  2A68 D;  2O5J D;  1OA7 A;  3H0G A;  1BW3 A;  2JIM A;  3X2H A;  1R7R A;  1PYQ A;  1WLF A;  5FTL A;  2VPZ A;  1DMR A;  3SUM A;  2AE0 X;  4FER A;  3GTM A;  4KDI A;  1PPY A;  1QCS A;  1G8K A;  4RV0 A;  1R27 A;  2VUM A;  3SUL A;  2NAP A;  4D7Z B;  2PJJ A;  2JA5 A;  4JP7 A;  4KLN A;  1EU1 A;  3IR7 A;  1PQH A;  1VC3 B;  2BH0 A;  2JIQ A;  1Y5I A;  2V3V A;  2YU9 A;  3GTP A;  2WAQ A;  1E5V A;  4AYB A;  1R9T A;  1OA9 A;  2A69 D;  2CW0 D;  3HU1 A;  3ENG A;  1TWF A;  1ZYR D;  4NOH A;  2DMR A;  4JJO A;  2V45 A;  1AW8 B;  5DYI A;  4AAY A;  2PMZ A;  1YLE A;  2WB1 A;  3PLX B;  1ZC1 A;  3X2J A;  2YUJ A;  1YNJ D;  4L48 A;  5FTM A;  5GLX A;  2BE5 D;  2JA7 A;  2PNW A;  5H4U A;  4CRZ A;  1SMY D;  3X2N A;  2JIP A;  2Y0S A;  2VPX A;  5FTJ A;  4AOK B;  3SUJ A;  4QIW A;  4AON B;  3X2O A;  1H5N A;  3QQ8 A;  5B6C A;  3HU2 A;  1YNN D;  4FG2 A;  1FDI A;  3X2L A; 
#chains in the Genus database with same CATH homology
 2JIR A;  3TIW A;  2C45 A;  3IR5 A;  3IR6 A;  2G6G A;  3GTG A;  1Y1W A;  2E7Z A;  5C1B A;  1S3S A;  1PT1 A;  2EEO B;  4KDL A;  5T5M D;  1PT0 A;  3OUG A;  4GA6 A;  1IW7 D;  1Q16 A;  3FKI A;  2IV2 X;  2NYA A;  1Y4Z A;  3QWZ A;  5FTK A;  2E2H A;  1CR5 A;  1CZ4 A;  2PIC A;  3O5A A;  4GA5 A;  3HU3 A;  3GTL A;  1I3Q A;  1E60 A;  4C2M A;  1TMO A;  3TM7 B;  2A6E D;  2NVY A;  3CZB A;  1WCM A;  2E2I A;  3GTO A;  3QC8 A;  2R92 A;  2PI8 A;  5T5I D;  2R7Z A;  4KO8 A;  1TWA A;  2R93 A;  1QDN A;  3HKZ A;  2B63 A;  1E18 A;  3QQ7 A;  1AA6 A;  1UHE A;  1E32 A;  5C18 A;  1TWH A;  5FTN A;  2PJH B;  3GTJ A;  2JA6 A;  1TWC A;  4DMR A;  2JIO A;  1SIW A;  1TWG A;  1G8J A;  1Y1V A;  2GAE A;  1KQG A;  2NVX A;  4CS0 A;  2G5D A;  2KI8 A;  3CF2 A;  1K83 A;  2A6H D;  2VPW A;  1OGY A;  4CRY G;  5GLF A;  1PQF A;  1E61 A;  3ML1 A;  4KOD A;  5DYG A;  1CZ5 A;  2VPY A;  4AZD A;  1PYU B;  1UHD A;  1PQE A;  1DMS A;  5EPP A;  1SFO A;  1I50 A;  1KQF A;  3CQZ A;  1H0H A;  3DMR A;  3GTQ A;  1FDO A;  3GTK A;  2A68 D;  2O5J D;  3H0G A;  2JIM A;  1R7R A;  1PYQ A;  1WLF A;  2VPZ A;  1DMR A;  2AE0 X;  3GTM A;  4KDI A;  1PPY A;  1QCS A;  1G8K A;  4RV0 A;  1R27 A;  2VUM A;  2NAP A;  4D7Z B;  2PJJ A;  2JA5 A;  4KLN A;  1EU1 A;  3IR7 A;  1PQH A;  1VC3 B;  2JIQ A;  1Y5I A;  2V3V A;  2YU9 A;  3GTP A;  2WAQ A;  1E5V A;  4AYB A;  1R9T A;  2A69 D;  2CW0 D;  3HU1 A;  1TWF A;  1ZYR D;  4NOH A;  2DMR A;  5DYI A;  2V45 A;  1AW8 B;  4AAY A;  2PMZ A;  1YLE A;  2WB1 A;  3PLX B;  1ZC1 A;  2YUJ A;  1YNJ D;  5FTM A;  2BE5 D;  2JA7 A;  2PNW A;  4CRZ A;  1SMY D;  2JIP A;  2Y0S A;  2VPX A;  5FTJ A;  4AOK B;  4QIW A;  4AON B;  1H5N A;  3QQ8 A;  5B6C A;  3HU2 A;  1YNN D;  1FDI A;  5FTL A; 
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