4CRYG

Direct visualisation of strain-induced protein post-translational modification
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
102
structure length
101
Chain Sequence
SCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Direct Visualisation of Strain-Induced Protein Post-Translational Modification
rcsb
molecule tags Lyase
source organism Escherichia coli k-12
molecule keywords ASPARTATE 1-DECARBOXYLASE
total genus 23
structure length 101
sequence length 102
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4cryG00
3GTJA 4GA5A 3IR7A 5FTKA 3IR6A 1E61A 1TWGA 2WAQA 4CRZA 3ML1A 3TIWA 1E5VA 1WLFA 2JA5A 3HU2A 1EU1A 2JIRA 4RV0A 4KLNA 1UHEA 1SFOA 2E7ZA 1E60A 5FTNA 1OGYA 3IR5A 4D7ZB 3H0GA 2VPXA 1I3QA 2JA7A 1TWFA 3CF2A 5B6CA 2E2IA 1Y1WA 2PMZA 1Y4ZA 1G8JA 4KODA 2NVYA 1PYQA 2IV2X 1FDIA 1TMOA 5FTMA 2JIPA 1WCMA 1CZ4A 2C45A 2Y0SA 2PJHB 1PT1A 5DYGA 5EPPA 3QQ7A 1IW7D 1H5NA 4C2MA 2JA6A 2WB1A 1S3SA 2YU9A 3CQZA 5GLFA 1SIWA 1G8KA 1E32A 1TWAA 5T5MD 3GTQA 4AONB 3GTMA 2R93A 2NYAA 3HU1A 1AA6A 1CZ5A 5FTJA 4AZDA 3GTPA 1R9TA 1R27A 2R92A 1PQHA 3FKIA 1CR5A 1Y1VA 1Y5IA 2B63A 1PPYA 3QWZA 1VC3B 5DYIA 4KDIA 4AOKB 5C18A 3GTGA 4DMRA 2R7ZA 4AYBA 1UHDA 1QDNA 1YLEA 4KDLA 3QQ8A 1TWCA 4GA6A 2VPZA 3HU3A 5FTLA 1PYUB 2DMRA 1DMRA 3GTOA 1KQFA 1K83A 1PT0A 2VPYA 3GTKA 2V3VA 1QCSA 1R7RA 3HKZA 3TM7B 1TWHA 2KI8A 1I50A 1PQEA 4QIWA 2JIOA 2V45A 1DMSA 2JIQA 4AAYA 1PQFA 2VPWA 4KO8A 1AW8B 2NVXA 2JIMA 1FDOA 5T5ID 2E2HA 3QC8A 4CS0A 2EEOB 3OUGA 3PLXB 1H0HA 3O5AA 2NAPA 1E18A 5C1BA 1KQGA 3GTLA 2VUMA 1Q16A 4CRYG 3DMRA
chains in the Genus database with same CATH superfamily
5GM9A 4GA5A 3GTJA 3IR7A 4ENGA 3ENGA 5H4UA 1HD5A 5FTKA 3IR6A 5GLXA 1E61A 3X2HA 1TWGA 2WAQA 1L8FA 4CRZA 3ML1A 4FG4A 4NOHA 3TIWA 1E5VA 1WLFA 2PNWA 2JA5A 1YNND 5GLYA 3D30A 4JS7A 3HU2A 1EU1A 2JIRA 4RV0A 4KLNA 1UHEA 3X2IA 1SFOA 2E7ZA 4FG2A 1E60A 5FTNA 1OGYA 3IR5A 4D7ZB 3H0GA 2BH0A 2VPXA 1I3QA 2JA7A 1TWFA 3CF2A 2GAEA 5B6CA 2E2IA 1Y1WA 2PMZA 1Y4ZA 1G8JA 4KODA 1PYQA 2NVYA 2IV2X 1FDIA 1TMOA 5FTMA 2JIPA 1WCMA 1CZ4A 1OA7A 2C45A 3X2LA 4FFTA 2Y0SA 2PJHB 1BW3A 1PT1A 5DYGA 1OA9A 5EPPA 3QQ7A 1IW7D 1H5NA 4C2MA 2JA6A 2WB1A 1S3SA 2YU9A 3CQZA 5GLFA 4FERA 1SIWA 1G8KA 1E32A 1TWAA 5T5MD 3SUMA 4AONB 3GTQA 3GTMA 2R93A 3X2MA 2NYAA 3HU1A 1AA6A 4JJOA 2A6HD 1CZ5A 3X2GA 5FTJA 4AZDA 1SMYD 1R9TA 3GTPA 1YNJD 1R27A 2R92A 1PQHA 3FKIA 1CR5A 1Y1VA 1Y5IA 2B63A 1PPYA 3QWZA 1VC3B 1ZYRD 2CW0D 5DYIA 4JCWA 4KDIA 2O5JD 4AOKB 5C18A 3GTGA 4DMRA 2R7ZA 3M3GA 2ENGA 4AYBA 1UHDA 1QDNA 1YLEA 4KDLA 3QQ8A 1N10A 1TWCA 4GA6A 2VPZA 3SUKA 2A68D 2KQAA 1ZC1A 3HU3A 5FTLA 1PYUB 2DMRA 1DMRA 3GTOA 1KQFA 1K83A 2PI8A 1PT0A 2VPYA 3GTKA 2V3VA 2PJJA 1QCSA 3CZBA 1R7RA 3HKZA 3TM7B 2G6GA 4JP7A 3X2JA 3SULA 1TWHA 2KI8A 1BW4A 1I50A 1PQEA 4QIWA 2JIOA 2V45A 1DMSA 3X2PA 2A6ED 2JIQA 4AAYA 1PQFA 4ZM7A 2VPWA 4KO8A 1AW8B 2PICA 2NVXA 2JIMA 1FDOA 2A69D 5T5ID 3SUJA 2E2HA 3X2NA 2G5DA 3QC8A 4CS0A 2HCZX 2EEOB 3OUGA 3PLXB 1WC2A 1H0HA 4AVRA 3O5AA 4JP6A 2NAPA 1E18A 3X2KA 5C1BA 1KQGA 3X2OA 3GTLA 2AE0X 2VUMA 2YUJA 1Q16A 2BE5D 4L48A 4CRYG 3DMRA
chains in the Genus database with same CATH topology
3GTJA 4GA5A 3IR7A 5FTKA 3IR6A 1E61A 1TWGA 2WAQA 4CRZA 3ML1A 4NOHA 3TIWA 1E5VA 1WLFA 2PNWA 2JA5A 1YNND 3HU2A 1EU1A 2JIRA 4RV0A 4KLNA 1UHEA 1SFOA 2E7ZA 1E60A 5FTNA 1OGYA 3IR5A 4D7ZB 3H0GA 2VPXA 1I3QA 2JA7A 1TWFA 3CF2A 2GAEA 5B6CA 2E2IA 1Y1WA 2PMZA 1Y4ZA 1G8JA 4KODA 1PYQA 2NVYA 2IV2X 1FDIA 1TMOA 5FTMA 2JIPA 1WCMA 1CZ4A 2C45A 2Y0SA 2PJHB 1PT1A 5DYGA 5EPPA 3QQ7A 1IW7D 1H5NA 4C2MA 2JA6A 2WB1A 1S3SA 2YU9A 3CQZA 5GLFA 1SIWA 1G8KA 1E32A 1TWAA 5T5MD 3GTQA 4AONB 3GTMA 2R93A 2NYAA 3HU1A 1AA6A 2A6HD 1CZ5A 5FTJA 4AZDA 1SMYD 1R9TA 3GTPA 1YNJD 1R27A 2R92A 1PQHA 3FKIA 1CR5A 1Y1VA 1Y5IA 2B63A 1PPYA 3QWZA 1VC3B 1ZYRD 2CW0D 5DYIA 4KDIA 2O5JD 4AOKB 5C18A 3GTGA 4DMRA 2R7ZA 4AYBA 1UHDA 1QDNA 1YLEA 4KDLA 3QQ8A 1TWCA 4GA6A 2VPZA 2A68D 3HU3A 1ZC1A 5FTLA 1PYUB 2DMRA 1DMRA 3GTOA 1KQFA 1K83A 2PI8A 1PT0A 2VPYA 3GTKA 2V3VA 2PJJA 1QCSA 3CZBA 1R7RA 3HKZA 3TM7B 2G6GA 1TWHA 2KI8A 1I50A 1PQEA 4QIWA 2JIOA 2V45A 1DMSA 2A6ED 2JIQA 4AAYA 1PQFA 2VPWA 4KO8A 1AW8B 2PICA 2NVXA 2JIMA 1FDOA 2A69D 5T5ID 2E2HA 2G5DA 3QC8A 4CS0A 2EEOB 3OUGA 3PLXB 1H0HA 3O5AA 2NAPA 1E18A 5C1BA 1KQGA 3GTLA 2AE0X 2VUMA 2YUJA 1Q16A 2BE5D 4CRYG 3DMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTJ A;  4GA5 A;  3IR7 A;  5FTK A;  3IR6 A;  1E61 A;  1TWG A;  2WAQ A;  4CRZ A;  3ML1 A;  3TIW A;  1E5V A;  1WLF A;  2JA5 A;  3HU2 A;  1EU1 A;  2JIR A;  4RV0 A;  4KLN A;  1UHE A;  1SFO A;  2E7Z A;  1E60 A;  5FTN A;  1OGY A;  3IR5 A;  4D7Z B;  3H0G A;  2VPX A;  1I3Q A;  2JA7 A;  1TWF A;  3CF2 A;  5B6C A;  2E2I A;  1Y1W A;  2PMZ A;  1Y4Z A;  1G8J A;  4KOD A;  2NVY A;  1PYQ A;  2IV2 X;  1FDI A;  1TMO A;  5FTM A;  2JIP A;  1WCM A;  1CZ4 A;  2C45 A;  2Y0S A;  2PJH B;  1PT1 A;  5DYG A;  5EPP A;  3QQ7 A;  1IW7 D;  1H5N A;  4C2M A;  2JA6 A;  2WB1 A;  1S3S A;  2YU9 A;  3CQZ A;  5GLF A;  1SIW A;  1G8K A;  1E32 A;  1TWA A;  5T5M D;  3GTQ A;  4AON B;  3GTM A;  2R93 A;  2NYA A;  3HU1 A;  1AA6 A;  1CZ5 A;  5FTJ A;  4AZD A;  3GTP A;  1R9T A;  1R27 A;  2R92 A;  1PQH A;  3FKI A;  1CR5 A;  1Y1V A;  1Y5I A;  2B63 A;  1PPY A;  3QWZ A;  1VC3 B;  5DYI A;  4KDI A;  4AOK B;  5C18 A;  3GTG A;  4DMR A;  2R7Z A;  4AYB A;  1UHD A;  1QDN A;  1YLE A;  4KDL A;  3QQ8 A;  1TWC A;  4GA6 A;  2VPZ A;  3HU3 A;  5FTL A;  1PYU B;  2DMR A;  1DMR A;  3GTO A;  1KQF A;  1K83 A;  1PT0 A;  2VPY A;  3GTK A;  2V3V A;  1QCS A;  1R7R A;  3HKZ A;  3TM7 B;  1TWH A;  2KI8 A;  1I50 A;  1PQE A;  4QIW A;  2JIO A;  2V45 A;  1DMS A;  2JIQ A;  4AAY A;  1PQF A;  2VPW A;  4KO8 A;  1AW8 B;  2NVX A;  2JIM A;  1FDO A;  5T5I D;  2E2H A;  3QC8 A;  4CS0 A;  2EEO B;  3OUG A;  3PLX B;  1H0H A;  3O5A A;  2NAP A;  1E18 A;  5C1B A;  1KQG A;  3GTL A;  2VUM A;  1Q16 A;  4CRY G;  3DMR A; 
#chains in the Genus database with same CATH topology
 5GM9 A;  4GA5 A;  3GTJ A;  3IR7 A;  4ENG A;  3ENG A;  5H4U A;  1HD5 A;  5FTK A;  3IR6 A;  5GLX A;  1E61 A;  3X2H A;  1TWG A;  2WAQ A;  1L8F A;  4CRZ A;  3ML1 A;  4FG4 A;  4NOH A;  3TIW A;  1E5V A;  1WLF A;  2PNW A;  2JA5 A;  1YNN D;  5GLY A;  3D30 A;  4JS7 A;  3HU2 A;  1EU1 A;  2JIR A;  4RV0 A;  4KLN A;  1UHE A;  3X2I A;  1SFO A;  2E7Z A;  4FG2 A;  1E60 A;  5FTN A;  1OGY A;  3IR5 A;  4D7Z B;  3H0G A;  2BH0 A;  2VPX A;  1I3Q A;  2JA7 A;  1TWF A;  3CF2 A;  2GAE A;  5B6C A;  2E2I A;  1Y1W A;  2PMZ A;  1Y4Z A;  1G8J A;  4KOD A;  1PYQ A;  2NVY A;  2IV2 X;  1FDI A;  1TMO A;  5FTM A;  2JIP A;  1WCM A;  1CZ4 A;  1OA7 A;  2C45 A;  3X2L A;  4FFT A;  2Y0S A;  2PJH B;  1BW3 A;  1PT1 A;  5DYG A;  1OA9 A;  5EPP A;  3QQ7 A;  1IW7 D;  1H5N A;  4C2M A;  2JA6 A;  2WB1 A;  1S3S A;  2YU9 A;  3CQZ A;  5GLF A;  4FER A;  1SIW A;  1G8K A;  1E32 A;  1TWA A;  5T5M D;  3SUM A;  4AON B;  3GTQ A;  3GTM A;  2R93 A;  3X2M A;  2NYA A;  3HU1 A;  1AA6 A;  4JJO A;  2A6H D;  1CZ5 A;  3X2G A;  5FTJ A;  4AZD A;  1SMY D;  1R9T A;  3GTP A;  1YNJ D;  1R27 A;  2R92 A;  1PQH A;  3FKI A;  1CR5 A;  1Y1V A;  1Y5I A;  2B63 A;  1PPY A;  3QWZ A;  1VC3 B;  1ZYR D;  2CW0 D;  5DYI A;  4JCW A;  4KDI A;  2O5J D;  4AOK B;  5C18 A;  3GTG A;  4DMR A;  2R7Z A;  3M3G A;  2ENG A;  4AYB A;  1UHD A;  1QDN A;  1YLE A;  4KDL A;  3QQ8 A;  1N10 A;  1TWC A;  4GA6 A;  2VPZ A;  3SUK A;  2A68 D;  2KQA A;  1ZC1 A;  3HU3 A;  5FTL A;  1PYU B;  2DMR A;  1DMR A;  3GTO A;  1KQF A;  1K83 A;  2PI8 A;  1PT0 A;  2VPY A;  3GTK A;  2V3V A;  2PJJ A;  1QCS A;  3CZB A;  1R7R A;  3HKZ A;  3TM7 B;  2G6G A;  4JP7 A;  3X2J A;  3SUL A;  1TWH A;  2KI8 A;  1BW4 A;  1I50 A;  1PQE A;  4QIW A;  2JIO A;  2V45 A;  1DMS A;  3X2P A;  2A6E D;  2JIQ A;  4AAY A;  1PQF A;  4ZM7 A;  2VPW A;  4KO8 A;  1AW8 B;  2PIC A;  2NVX A;  2JIM A;  1FDO A;  2A69 D;  5T5I D;  3SUJ A;  2E2H A;  3X2N A;  2G5D A;  3QC8 A;  4CS0 A;  2HCZ X;  2EEO B;  3OUG A;  3PLX B;  1WC2 A;  1H0H A;  4AVR A;  3O5A A;  4JP6 A;  2NAP A;  1E18 A;  3X2K A;  5C1B A;  1KQG A;  3X2O A;  3GTL A;  2AE0 X;  2VUM A;  2YUJ A;  1Q16 A;  2BE5 D;  4L48 A;  4CRY G;  3DMR A; 
#chains in the Genus database with same CATH homology
 3GTJ A;  4GA5 A;  3IR7 A;  5FTK A;  3IR6 A;  1E61 A;  1TWG A;  2WAQ A;  4CRZ A;  3ML1 A;  4NOH A;  3TIW A;  1E5V A;  1WLF A;  2PNW A;  2JA5 A;  1YNN D;  3HU2 A;  1EU1 A;  2JIR A;  4RV0 A;  4KLN A;  1UHE A;  1SFO A;  2E7Z A;  1E60 A;  5FTN A;  1OGY A;  3IR5 A;  4D7Z B;  3H0G A;  2VPX A;  1I3Q A;  2JA7 A;  1TWF A;  3CF2 A;  2GAE A;  5B6C A;  2E2I A;  1Y1W A;  2PMZ A;  1Y4Z A;  1G8J A;  4KOD A;  1PYQ A;  2NVY A;  2IV2 X;  1FDI A;  1TMO A;  5FTM A;  2JIP A;  1WCM A;  1CZ4 A;  2C45 A;  2Y0S A;  2PJH B;  1PT1 A;  5DYG A;  5EPP A;  3QQ7 A;  1IW7 D;  1H5N A;  4C2M A;  2JA6 A;  2WB1 A;  1S3S A;  2YU9 A;  3CQZ A;  5GLF A;  1SIW A;  1G8K A;  1E32 A;  1TWA A;  5T5M D;  3GTQ A;  4AON B;  3GTM A;  2R93 A;  2NYA A;  3HU1 A;  1AA6 A;  2A6H D;  1CZ5 A;  5FTJ A;  4AZD A;  1SMY D;  1R9T A;  3GTP A;  1YNJ D;  1R27 A;  2R92 A;  1PQH A;  3FKI A;  1CR5 A;  1Y1V A;  1Y5I A;  2B63 A;  1PPY A;  3QWZ A;  1VC3 B;  1ZYR D;  2CW0 D;  5DYI A;  4KDI A;  2O5J D;  4AOK B;  5C18 A;  3GTG A;  4DMR A;  2R7Z A;  4AYB A;  1UHD A;  1QDN A;  1YLE A;  4KDL A;  3QQ8 A;  1TWC A;  4GA6 A;  2VPZ A;  2A68 D;  3HU3 A;  1ZC1 A;  5FTL A;  1PYU B;  2DMR A;  1DMR A;  3GTO A;  1KQF A;  1K83 A;  2PI8 A;  1PT0 A;  2VPY A;  3GTK A;  2V3V A;  2PJJ A;  1QCS A;  3CZB A;  1R7R A;  3HKZ A;  3TM7 B;  2G6G A;  1TWH A;  2KI8 A;  1I50 A;  1PQE A;  4QIW A;  2JIO A;  2V45 A;  1DMS A;  2A6E D;  2JIQ A;  4AAY A;  1PQF A;  2VPW A;  4KO8 A;  1AW8 B;  2PIC A;  2NVX A;  2JIM A;  1FDO A;  2A69 D;  5T5I D;  2E2H A;  2G5D A;  3QC8 A;  4CS0 A;  2EEO B;  3OUG A;  3PLX B;  1H0H A;  3O5A A;  2NAP A;  1E18 A;  5C1B A;  1KQG A;  3GTL A;  2AE0 X;  2VUM A;  2YUJ A;  1Q16 A;  2BE5 D;  4CRY G;  3DMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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