4D7ZB

E. coli l-aspartate-alpha-decarboxylase mutant n72q to a resolution of 1.9 angstroms
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
CAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVQGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of the E. Coli L-Aspartate-Alpha-Decarboxylase Mutant N72Q to a Resolution of 1.9 Angstroms
rcsb
molecule tags Lyase
source organism Escherichia coli
molecule keywords ASPARTATE 1-DECARBOXYLASE BETA CHAIN
total genus 22
structure length 94
sequence length 94
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-12-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4d7zB00
3GTQA 1EU1A 1CR5A 1R9TA 1FDOA 3TIWA 2JA7A 2EEOB 2NYAA 1I50A 4KODA 1E32A 1G8JA 4AYBA 1S3SA 5T5MD 3HU2A 4CRZA 4C2MA 4D7ZB 2JIRA 1DMRA 3IR5A 5DYGA 4KDLA 3GTPA 1SIWA 1Y5IA 1IW7D 2KI8A 1K83A 2E2IA 1QDNA 1PYUB 4AAYA 3DMRA 3CF2A 3HKZA 1TWCA 2V45A 1KQFA 1PQFA 3QQ7A 4QIWA 5FTKA 5T5ID 1G8KA 5C1BA 3TM7B 5B6CA 1PYQA 3OUGA 1OGYA 2C45A 5FTJA 1WLFA 2PJHB 1TWGA 1TWHA 1TMOA 1DMSA 2R92A 1CZ4A 4AONB 4RV0A 3GTJA 1PQHA 4KLNA 2E2HA 2VPWA 5EPPA 2YU9A 1KQGA 2NVYA 4CRYG 1H0HA 1WCMA 2Y0SA 3QWZA 2NAPA 3HU1A 1Y1VA 3FKIA 4GA5A 3GTKA 1E60A 3O5AA 2NVXA 1H5NA 1UHEA 2PMZA 5GLFA 1I3QA 1PPYA 1Y4ZA 3GTGA 1PT0A 1Q16A 1TWFA 4AZDA 3PLXB 1YLEA 2E7ZA 2JIPA 2V3VA 3QC8A 3QQ8A 2JIOA 4DMRA 3HU3A 5C18A 2JIMA 2WB1A 1PQEA 1TWAA 1E5VA 4GA6A 1CZ5A 1AA6A 1E18A 2IV2X 3GTMA 1VC3B 3ML1A 5DYIA 5FTMA 3GTLA 1UHDA 1SFOA 3H0GA 1AW8B 1Y1WA 1E61A 4AOKB 5FTLA 2VPZA 3IR7A 3GTOA 4CS0A 2WAQA 2DMRA 2R7ZA 1FDIA 2JIQA 1QCSA 2JA6A 3IR6A 4KO8A 1PT1A 2VPXA 2JA5A 1R27A 3CQZA 2B63A 4KDIA 2VUMA 5FTNA 1R7RA 2R93A 2VPYA
chains in the Genus database with same CATH superfamily
4JS7A 3GTQA 5GLYA 1EU1A 3SUKA 1CR5A 1R9TA 1FDOA 1OA7A 3TIWA 3X2MA 2JA7A 2EEOB 2NYAA 1I50A 4KODA 2PI8A 1E32A 1G8JA 4AYBA 1S3SA 5T5MD 3HU2A 2CW0D 4CRZA 3SUJA 5H4UA 4D7ZB 2JIRA 3CZBA 4C2MA 1DMRA 3IR5A 5DYGA 3SULA 4KDLA 3GTPA 1SIWA 1Y5IA 1IW7D 2KI8A 1K83A 2E2IA 1QDNA 1PYUB 2A6ED 3CF2A 3DMRA 3HKZA 4AAYA 1TWCA 2ENGA 2V45A 4JP7A 4FG2A 1KQFA 1PQFA 3QQ7A 1YNND 1L8FA 4QIWA 5FTKA 5GM9A 1G8KA 5T5ID 5C1BA 3X2PA 3TM7B 3X2KA 5B6CA 1PYQA 3X2OA 3OUGA 1OGYA 2C45A 5GLXA 1WC2A 5FTJA 3X2LA 2PICA 1WLFA 2YUJA 3SUMA 2PJHB 2VPYA 1TWGA 2KQAA 2GAEA 1TWHA 1TMOA 1DMSA 2R92A 4AVRA 1CZ4A 2A69D 4AONB 4FFTA 4RV0A 3GTJA 1PQHA 4KLNA 1ZC1A 2E2HA 2VPWA 5EPPA 2YU9A 1KQGA 2NVYA 4FG4A 2HCZX 4CRYG 1H0HA 1ZYRD 1WCMA 2Y0SA 3QWZA 2G5DA 2NAPA 3HU1A 1Y1VA 3FKIA 4GA5A 3GTKA 1BW4A 1E60A 3O5AA 3X2IA 2NVXA 1H5NA 1UHEA 2PMZA 5GLFA 3X2GA 1I3QA 1PPYA 2A6HD 1Y4ZA 3GTGA 2G6GA 2AE0X 1PT0A 3X2JA 1YNJD 1Q16A 1TWFA 4AZDA 3PLXB 1YLEA 2E7ZA 2JIPA 2V3VA 3QC8A 4JP6A 3QQ8A 2JIOA 2A68D 4DMRA 3HU3A 5C18A 4L48A 2JIMA 3D30A 2WB1A 3ENGA 4JJOA 1PQEA 1TWAA 1E5VA 2BE5D 4GA6A 1CZ5A 1AA6A 1E18A 2IV2X 2PJJA 3X2NA 3GTMA 1VC3B 3ML1A 2PNWA 5DYIA 5FTMA 3GTLA 1HD5A 1UHDA 1SFOA 4NOHA 1N10A 3H0GA 1AW8B 4JCWA 1E61A 1SMYD 4ENGA 1Y1WA 4AOKB 5FTLA 2VPZA 4FERA 3M3GA 3IR7A 3GTOA 4CS0A 2WAQA 2DMRA 2R7ZA 2BH0A 1FDIA 2JIQA 1QCSA 2JA6A 3IR6A 4KO8A 1PT1A 2O5JD 2VPXA 2JA5A 1R27A 4ZM7A 1BW3A 3CQZA 2B63A 4KDIA 3X2HA 2VUMA 5FTNA 1R7RA 2R93A 1OA9A
chains in the Genus database with same CATH topology
3GTQA 1EU1A 1CR5A 1R9TA 1FDOA 3TIWA 2JA7A 2EEOB 2NYAA 1I50A 4KODA 2PI8A 1E32A 1G8JA 4AYBA 1S3SA 5T5MD 3HU2A 2CW0D 4CRZA 4C2MA 4D7ZB 2JIRA 3CZBA 1DMRA 3IR5A 5DYGA 4KDLA 3GTPA 1SIWA 1Y5IA 1IW7D 2KI8A 1K83A 2E2IA 1QDNA 1PYUB 2A6ED 3CF2A 3DMRA 3HKZA 4AAYA 1TWCA 2V45A 1KQFA 1PQFA 3QQ7A 1YNND 4QIWA 5FTKA 5T5ID 1G8KA 5C1BA 3TM7B 5B6CA 1PYQA 3OUGA 1OGYA 2C45A 5FTJA 2PICA 1WLFA 2YUJA 2PJHB 1TWGA 2GAEA 1TWHA 1TMOA 1DMSA 2R92A 1CZ4A 2A69D 4AONB 4RV0A 3GTJA 1PQHA 4KLNA 1ZC1A 2E2HA 2VPWA 5EPPA 2YU9A 1KQGA 2NVYA 4CRYG 1H0HA 1ZYRD 1WCMA 2Y0SA 3QWZA 2G5DA 2NAPA 3HU1A 1Y1VA 3FKIA 4GA5A 3GTKA 1E60A 3O5AA 2NVXA 1H5NA 1UHEA 2PMZA 5GLFA 1I3QA 1PPYA 2A6HD 1Y4ZA 3GTGA 2G6GA 2AE0X 1PT0A 1YNJD 1Q16A 1TWFA 4AZDA 3PLXB 1YLEA 2E7ZA 2JIPA 2V3VA 3QC8A 3QQ8A 2JIOA 2A68D 4DMRA 3HU3A 5C18A 2JIMA 2WB1A 1PQEA 1TWAA 1E5VA 2BE5D 4GA6A 1CZ5A 1AA6A 1E18A 2IV2X 2PJJA 3GTMA 1VC3B 3ML1A 2PNWA 5DYIA 5FTMA 3GTLA 1UHDA 1SFOA 4NOHA 3H0GA 1AW8B 1Y1WA 1E61A 1SMYD 4AOKB 5FTLA 2VPZA 3IR7A 3GTOA 4CS0A 2WAQA 2DMRA 2R7ZA 1FDIA 2JIQA 1QCSA 2JA6A 3IR6A 4KO8A 1PT1A 2O5JD 2VPXA 2JA5A 1R27A 3CQZA 2B63A 4KDIA 2VUMA 5FTNA 1R7RA 2R93A 2VPYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTQ A;  1EU1 A;  1CR5 A;  1R9T A;  1FDO A;  3TIW A;  2JA7 A;  2EEO B;  2NYA A;  1I50 A;  4KOD A;  1E32 A;  1G8J A;  4AYB A;  1S3S A;  5T5M D;  3HU2 A;  4CRZ A;  4C2M A;  4D7Z B;  2JIR A;  1DMR A;  3IR5 A;  5DYG A;  4KDL A;  3GTP A;  1SIW A;  1Y5I A;  1IW7 D;  2KI8 A;  1K83 A;  2E2I A;  1QDN A;  1PYU B;  4AAY A;  3DMR A;  3CF2 A;  3HKZ A;  1TWC A;  2V45 A;  1KQF A;  1PQF A;  3QQ7 A;  4QIW A;  5FTK A;  5T5I D;  1G8K A;  5C1B A;  3TM7 B;  5B6C A;  1PYQ A;  3OUG A;  1OGY A;  2C45 A;  5FTJ A;  1WLF A;  2PJH B;  1TWG A;  1TWH A;  1TMO A;  1DMS A;  2R92 A;  1CZ4 A;  4AON B;  4RV0 A;  3GTJ A;  1PQH A;  4KLN A;  2E2H A;  2VPW A;  5EPP A;  2YU9 A;  1KQG A;  2NVY A;  4CRY G;  1H0H A;  1WCM A;  2Y0S A;  3QWZ A;  2NAP A;  3HU1 A;  1Y1V A;  3FKI A;  4GA5 A;  3GTK A;  1E60 A;  3O5A A;  2NVX A;  1H5N A;  1UHE A;  2PMZ A;  5GLF A;  1I3Q A;  1PPY A;  1Y4Z A;  3GTG A;  1PT0 A;  1Q16 A;  1TWF A;  4AZD A;  3PLX B;  1YLE A;  2E7Z A;  2JIP A;  2V3V A;  3QC8 A;  3QQ8 A;  2JIO A;  4DMR A;  3HU3 A;  5C18 A;  2JIM A;  2WB1 A;  1PQE A;  1TWA A;  1E5V A;  4GA6 A;  1CZ5 A;  1AA6 A;  1E18 A;  2IV2 X;  3GTM A;  1VC3 B;  3ML1 A;  5DYI A;  5FTM A;  3GTL A;  1UHD A;  1SFO A;  3H0G A;  1AW8 B;  1Y1W A;  1E61 A;  4AOK B;  5FTL A;  2VPZ A;  3IR7 A;  3GTO A;  4CS0 A;  2WAQ A;  2DMR A;  2R7Z A;  1FDI A;  2JIQ A;  1QCS A;  2JA6 A;  3IR6 A;  4KO8 A;  1PT1 A;  2VPX A;  2JA5 A;  1R27 A;  3CQZ A;  2B63 A;  4KDI A;  2VUM A;  5FTN A;  1R7R A;  2R93 A;  2VPY A; 
#chains in the Genus database with same CATH topology
 4JS7 A;  3GTQ A;  5GLY A;  1EU1 A;  3SUK A;  1CR5 A;  1R9T A;  1FDO A;  1OA7 A;  3TIW A;  3X2M A;  2JA7 A;  2EEO B;  2NYA A;  1I50 A;  4KOD A;  2PI8 A;  1E32 A;  1G8J A;  4AYB A;  1S3S A;  5T5M D;  3HU2 A;  2CW0 D;  4CRZ A;  3SUJ A;  5H4U A;  4D7Z B;  2JIR A;  3CZB A;  4C2M A;  1DMR A;  3IR5 A;  5DYG A;  3SUL A;  4KDL A;  3GTP A;  1SIW A;  1Y5I A;  1IW7 D;  2KI8 A;  1K83 A;  2E2I A;  1QDN A;  1PYU B;  2A6E D;  3CF2 A;  3DMR A;  3HKZ A;  4AAY A;  1TWC A;  2ENG A;  2V45 A;  4JP7 A;  4FG2 A;  1KQF A;  1PQF A;  3QQ7 A;  1YNN D;  1L8F A;  4QIW A;  5FTK A;  5GM9 A;  1G8K A;  5T5I D;  5C1B A;  3X2P A;  3TM7 B;  3X2K A;  5B6C A;  1PYQ A;  3X2O A;  3OUG A;  1OGY A;  2C45 A;  5GLX A;  1WC2 A;  5FTJ A;  3X2L A;  2PIC A;  1WLF A;  2YUJ A;  3SUM A;  2PJH B;  2VPY A;  1TWG A;  2KQA A;  2GAE A;  1TWH A;  1TMO A;  1DMS A;  2R92 A;  4AVR A;  1CZ4 A;  2A69 D;  4AON B;  4FFT A;  4RV0 A;  3GTJ A;  1PQH A;  4KLN A;  1ZC1 A;  2E2H A;  2VPW A;  5EPP A;  2YU9 A;  1KQG A;  2NVY A;  4FG4 A;  2HCZ X;  4CRY G;  1H0H A;  1ZYR D;  1WCM A;  2Y0S A;  3QWZ A;  2G5D A;  2NAP A;  3HU1 A;  1Y1V A;  3FKI A;  4GA5 A;  3GTK A;  1BW4 A;  1E60 A;  3O5A A;  3X2I A;  2NVX A;  1H5N A;  1UHE A;  2PMZ A;  5GLF A;  3X2G A;  1I3Q A;  1PPY A;  2A6H D;  1Y4Z A;  3GTG A;  2G6G A;  2AE0 X;  1PT0 A;  3X2J A;  1YNJ D;  1Q16 A;  1TWF A;  4AZD A;  3PLX B;  1YLE A;  2E7Z A;  2JIP A;  2V3V A;  3QC8 A;  4JP6 A;  3QQ8 A;  2JIO A;  2A68 D;  4DMR A;  3HU3 A;  5C18 A;  4L48 A;  2JIM A;  3D30 A;  2WB1 A;  3ENG A;  4JJO A;  1PQE A;  1TWA A;  1E5V A;  2BE5 D;  4GA6 A;  1CZ5 A;  1AA6 A;  1E18 A;  2IV2 X;  2PJJ A;  3X2N A;  3GTM A;  1VC3 B;  3ML1 A;  2PNW A;  5DYI A;  5FTM A;  3GTL A;  1HD5 A;  1UHD A;  1SFO A;  4NOH A;  1N10 A;  3H0G A;  1AW8 B;  4JCW A;  1E61 A;  1SMY D;  4ENG A;  1Y1W A;  4AOK B;  5FTL A;  2VPZ A;  4FER A;  3M3G A;  3IR7 A;  3GTO A;  4CS0 A;  2WAQ A;  2DMR A;  2R7Z A;  2BH0 A;  1FDI A;  2JIQ A;  1QCS A;  2JA6 A;  3IR6 A;  4KO8 A;  1PT1 A;  2O5J D;  2VPX A;  2JA5 A;  1R27 A;  4ZM7 A;  1BW3 A;  3CQZ A;  2B63 A;  4KDI A;  3X2H A;  2VUM A;  5FTN A;  1R7R A;  2R93 A;  1OA9 A; 
#chains in the Genus database with same CATH homology
 3GTQ A;  1EU1 A;  1CR5 A;  1R9T A;  1FDO A;  3TIW A;  2JA7 A;  2EEO B;  2NYA A;  1I50 A;  4KOD A;  2PI8 A;  1E32 A;  1G8J A;  4AYB A;  1S3S A;  5T5M D;  3HU2 A;  2CW0 D;  4CRZ A;  4C2M A;  4D7Z B;  2JIR A;  3CZB A;  1DMR A;  3IR5 A;  5DYG A;  4KDL A;  3GTP A;  1SIW A;  1Y5I A;  1IW7 D;  2KI8 A;  1K83 A;  2E2I A;  1QDN A;  1PYU B;  2A6E D;  3CF2 A;  3DMR A;  3HKZ A;  4AAY A;  1TWC A;  2V45 A;  1KQF A;  1PQF A;  3QQ7 A;  1YNN D;  4QIW A;  5FTK A;  5T5I D;  1G8K A;  5C1B A;  3TM7 B;  5B6C A;  1PYQ A;  3OUG A;  1OGY A;  2C45 A;  5FTJ A;  2PIC A;  1WLF A;  2YUJ A;  2PJH B;  1TWG A;  2GAE A;  1TWH A;  1TMO A;  1DMS A;  2R92 A;  1CZ4 A;  2A69 D;  4AON B;  4RV0 A;  3GTJ A;  1PQH A;  4KLN A;  1ZC1 A;  2E2H A;  2VPW A;  5EPP A;  2YU9 A;  1KQG A;  2NVY A;  4CRY G;  1H0H A;  1ZYR D;  1WCM A;  2Y0S A;  3QWZ A;  2G5D A;  2NAP A;  3HU1 A;  1Y1V A;  3FKI A;  4GA5 A;  3GTK A;  1E60 A;  3O5A A;  2NVX A;  1H5N A;  1UHE A;  2PMZ A;  5GLF A;  1I3Q A;  1PPY A;  2A6H D;  1Y4Z A;  3GTG A;  2G6G A;  2AE0 X;  1PT0 A;  1YNJ D;  1Q16 A;  1TWF A;  4AZD A;  3PLX B;  1YLE A;  2E7Z A;  2JIP A;  2V3V A;  3QC8 A;  3QQ8 A;  2JIO A;  2A68 D;  4DMR A;  3HU3 A;  5C18 A;  2JIM A;  2WB1 A;  1PQE A;  1TWA A;  1E5V A;  2BE5 D;  4GA6 A;  1CZ5 A;  1AA6 A;  1E18 A;  2IV2 X;  2PJJ A;  3GTM A;  1VC3 B;  3ML1 A;  2PNW A;  5DYI A;  5FTM A;  3GTL A;  1UHD A;  1SFO A;  4NOH A;  3H0G A;  1AW8 B;  1Y1W A;  1E61 A;  1SMY D;  4AOK B;  5FTL A;  2VPZ A;  3IR7 A;  3GTO A;  4CS0 A;  2WAQ A;  2DMR A;  2R7Z A;  1FDI A;  2JIQ A;  1QCS A;  2JA6 A;  3IR6 A;  4KO8 A;  1PT1 A;  2O5J D;  2VPX A;  2JA5 A;  1R27 A;  3CQZ A;  2B63 A;  4KDI A;  2VUM A;  5FTN A;  1R7R A;  2R93 A;  2VPY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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