4AZDA

T57v mutant of aspartate decarboxylase
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
122
structure length
122
Chain Sequence
VPRGSMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-15)TII2 (39-42)TIV3 (109-112)S2 (17-19)S7 (83-94)EMPTYS3 (27-29)3H1 (74-77)AH1 (30-36)S4 (42-48)S6 (69-72)TIV2 (48-51)TI2 (49-52)S5 (54-62)TII4 (80-83)AH2 (95-100)S8 (104-109)S9 (113-115)TI1 (19-22)TII3 (63-66)Updating...
connected with : NaN
molecule tags Lyase
source organism Escherichia coli
publication title Threonine 57 is Required for the Post-Translational Activation of Escherichia Coli Aspartate Alpha-Decarboxylase
pubmed doi rcsb
molecule keywords ASPARTATE 1-DECARBOXYLASE
total genus 35
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2012-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4azdA00
3HU3A 2PMZA 2VPXA 3IR5A 1PYQA 3GTKA 4AZDA 4CRYG 2JA5A 2JIRA 1PPYA 1K83A 2C45A 3GTQA 1PQHA 2E7ZA 2NAPA 5FTNA 2VUMA 1VC3B 4GA6A 1E18A 2NVXA 5EPPA 3CQZA 1TWFA 2R7ZA 1WCMA 3ML1A 4KODA 1KQGA 1E61A 4GA5A 3TM7B 3H0GA 5C1BA 2VPWA 3OUGA 3HU1A 1R7RA 4AAYA 3GTMA 1UHDA 3CF2A 3PLXB 1TWAA 1Q16A 4KO8A 2WAQA 5C18A 4AYBA 1AW8B 2IV2X 4CRZA 1AA6A 5DYGA 3GTLA 2YU9A 2JA7A 1CZ5A 1S3SA 5B6CA 2VPZA 1I3QA 3GTJA 1E5VA 3IR6A 2EEOB 1Y4ZA 4CS0A 1R27A 3GTPA 2WB1A 5T5ID 2Y0SA 3DMRA 3IR7A 1OGYA 1SIWA 2NYAA 1E60A 2KI8A 1DMSA 3GTOA 2JIQA 4AONB 1QCSA 2JIOA 1Y1VA 2JIMA 2VPYA 1H5NA 4RV0A 1FDOA 1PT1A 2B63A 2JIPA 3HKZA 4DMRA 1KQFA 5DYIA 1QDNA 1YLEA 1FDIA 5GLFA 1Y1WA 5FTMA 2DMRA 3QQ8A 1TMOA 2E2HA 1PQFA 1DMRA 1UHEA 1PQEA 2PJHB 3O5AA 5T5MD 3GTGA 2NVYA 4D7ZB 1SFOA 1PYUB 4C2MA 1E32A 5FTKA 4AOKB 1PT0A 1Y5IA 1R9TA 2E2IA 1WLFA 1CZ4A 1EU1A 1G8JA 5FTLA 2JA6A 4QIWA 1H0HA 1G8KA 2V45A 2V3VA 3HU2A 3QC8A 2R93A 3FKIA 1TWGA 3QQ7A 5FTJA 1IW7D 4KDLA 1TWHA 4KLNA 4KDIA 1CR5A 3QWZA 3TIWA 1TWCA 2R92A 1I50A
chains in the Genus database with same CATH superfamily
4ENGA 3HU3A 2PMZA 2VPXA 1YNJD 2CW0D 2PICA 3IR5A 1PYQA 3SUMA 3GTKA 4JJOA 4AZDA 2A6ED 4CRYG 3X2JA 2JA5A 2JIRA 2BE5D 1PPYA 4FERA 1K83A 2KQAA 2C45A 3GTQA 1HD5A 1PQHA 2E7ZA 2NAPA 5FTNA 2VUMA 1VC3B 2BH0A 4GA6A 1E18A 2NVXA 5EPPA 3CQZA 1TWFA 1BW3A 2R7ZA 1WCMA 4JCWA 3ML1A 4KODA 1KQGA 3X2PA 3X2IA 4NOHA 1E61A 4GA5A 3TM7B 3H0GA 4L48A 5C1BA 2VPWA 3OUGA 3HU1A 1YNND 1R7RA 4AAYA 3GTMA 2HCZX 1UHDA 3CF2A 3ENGA 3PLXB 1TWAA 1Q16A 3X2NA 4ZM7A 1BW4A 4KO8A 1L8FA 2WAQA 5C18A 3SUKA 4AYBA 2PNWA 1AW8B 4FG2A 2IV2X 4CRZA 1AA6A 5DYGA 3GTLA 2YU9A 4FFTA 2JA7A 1CZ5A 1S3SA 5B6CA 2VPZA 1I3QA 3GTJA 1E5VA 3IR6A 3SUJA 2EEOB 1Y4ZA 1OA9A 1ZYRD 1R27A 4CS0A 3GTPA 2WB1A 5GLXA 5T5ID 2Y0SA 3DMRA 3X2HA 3IR7A 1OGYA 3M3GA 1SIWA 2NYAA 3CZBA 5H4UA 1E60A 2KI8A 3SULA 1DMSA 3GTOA 4JS7A 2JIQA 4AONB 1QCSA 2JIOA 1SMYD 1Y1VA 1N10A 2JIMA 2VPYA 1H5NA 4RV0A 1FDOA 1PT1A 2B63A 2JIPA 3HKZA 4DMRA 1KQFA 5DYIA 1QDNA 1YLEA 5GM9A 1FDIA 1ZC1A 2A68D 2PJJA 5GLFA 1Y1WA 5FTMA 2DMRA 3QQ8A 1OA7A 1TMOA 2E2HA 1PQFA 1DMRA 2YUJA 1UHEA 2PI8A 2A69D 1PQEA 2PJHB 3O5AA 5T5MD 3GTGA 2NVYA 4D7ZB 1SFOA 1PYUB 4C2MA 1WC2A 3X2LA 1E32A 5FTKA 4AOKB 1PT0A 3X2GA 3D30A 1Y5IA 1R9TA 2E2IA 1WLFA 1CZ4A 1EU1A 1G8JA 4JP7A 5FTLA 2JA6A 4QIWA 1H0HA 1G8KA 2V45A 4JP6A 2V3VA 2A6HD 3HU2A 3QC8A 5GLYA 2G6GA 2AE0X 2O5JD 2R93A 4FG4A 3X2OA 3FKIA 1TWGA 2GAEA 3QQ7A 5FTJA 1IW7D 3X2KA 4KDLA 1TWHA 4KLNA 3X2MA 4KDIA 4AVRA 1CR5A 3QWZA 3TIWA 2G5DA 1TWCA 2ENGA 2R92A 1I50A
chains in the Genus database with same CATH topology
3HU3A 2PMZA 2VPXA 1YNJD 2CW0D 2PICA 3IR5A 1PYQA 3GTKA 4AZDA 2A6ED 4CRYG 2JA5A 2JIRA 2BE5D 1PPYA 1K83A 2C45A 3GTQA 1PQHA 2E7ZA 2NAPA 5FTNA 2VUMA 1VC3B 4GA6A 1E18A 2NVXA 5EPPA 3CQZA 1TWFA 2R7ZA 1WCMA 3ML1A 4KODA 1KQGA 4NOHA 1E61A 4GA5A 3TM7B 3H0GA 5C1BA 2VPWA 3OUGA 3HU1A 1YNND 1R7RA 4AAYA 3GTMA 1UHDA 3CF2A 3PLXB 1TWAA 1Q16A 4KO8A 2WAQA 5C18A 4AYBA 2PNWA 1AW8B 2IV2X 4CRZA 1AA6A 5DYGA 3GTLA 2YU9A 2JA7A 1CZ5A 1S3SA 5B6CA 2VPZA 1I3QA 3GTJA 1E5VA 3IR6A 2EEOB 1Y4ZA 4CS0A 1ZYRD 1R27A 3GTPA 2WB1A 5T5ID 2Y0SA 3DMRA 3IR7A 1OGYA 1SIWA 2NYAA 3CZBA 1E60A 2KI8A 1DMSA 3GTOA 2JIQA 4AONB 1QCSA 2JIOA 1SMYD 1Y1VA 2JIMA 2VPYA 1H5NA 4RV0A 1FDOA 1PT1A 2B63A 2JIPA 3HKZA 4DMRA 1KQFA 5DYIA 1QDNA 1YLEA 1FDIA 1ZC1A 2A68D 2PJJA 5GLFA 1Y1WA 5FTMA 2DMRA 3QQ8A 1TMOA 2E2HA 1PQFA 1DMRA 2YUJA 1UHEA 2PI8A 2A69D 1PQEA 2PJHB 3O5AA 5T5MD 3GTGA 2NVYA 4D7ZB 1SFOA 1PYUB 4C2MA 1E32A 5FTKA 4AOKB 1PT0A 1Y5IA 1R9TA 2E2IA 1WLFA 1CZ4A 1EU1A 1G8JA 5FTLA 2JA6A 4QIWA 1H0HA 1G8KA 2V45A 2V3VA 2A6HD 3HU2A 3QC8A 2G6GA 2AE0X 2O5JD 2R93A 3FKIA 1TWGA 2GAEA 3QQ7A 5FTJA 1IW7D 4KDLA 1TWHA 4KLNA 4KDIA 1CR5A 3QWZA 3TIWA 2G5DA 1TWCA 2R92A 1I50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HU3 A;  2PMZ A;  2VPX A;  3IR5 A;  1PYQ A;  3GTK A;  4AZD A;  4CRY G;  2JA5 A;  2JIR A;  1PPY A;  1K83 A;  2C45 A;  3GTQ A;  1PQH A;  2E7Z A;  2NAP A;  5FTN A;  2VUM A;  1VC3 B;  4GA6 A;  1E18 A;  2NVX A;  5EPP A;  3CQZ A;  1TWF A;  2R7Z A;  1WCM A;  3ML1 A;  4KOD A;  1KQG A;  1E61 A;  4GA5 A;  3TM7 B;  3H0G A;  5C1B A;  2VPW A;  3OUG A;  3HU1 A;  1R7R A;  4AAY A;  3GTM A;  1UHD A;  3CF2 A;  3PLX B;  1TWA A;  1Q16 A;  4KO8 A;  2WAQ A;  5C18 A;  4AYB A;  1AW8 B;  2IV2 X;  4CRZ A;  1AA6 A;  5DYG A;  3GTL A;  2YU9 A;  2JA7 A;  1CZ5 A;  1S3S A;  5B6C A;  2VPZ A;  1I3Q A;  3GTJ A;  1E5V A;  3IR6 A;  2EEO B;  1Y4Z A;  4CS0 A;  1R27 A;  3GTP A;  2WB1 A;  5T5I D;  2Y0S A;  3DMR A;  3IR7 A;  1OGY A;  1SIW A;  2NYA A;  1E60 A;  2KI8 A;  1DMS A;  3GTO A;  2JIQ A;  4AON B;  1QCS A;  2JIO A;  1Y1V A;  2JIM A;  2VPY A;  1H5N A;  4RV0 A;  1FDO A;  1PT1 A;  2B63 A;  2JIP A;  3HKZ A;  4DMR A;  1KQF A;  5DYI A;  1QDN A;  1YLE A;  1FDI A;  5GLF A;  1Y1W A;  5FTM A;  2DMR A;  3QQ8 A;  1TMO A;  2E2H A;  1PQF A;  1DMR A;  1UHE A;  1PQE A;  2PJH B;  3O5A A;  5T5M D;  3GTG A;  2NVY A;  4D7Z B;  1SFO A;  1PYU B;  4C2M A;  1E32 A;  5FTK A;  4AOK B;  1PT0 A;  1Y5I A;  1R9T A;  2E2I A;  1WLF A;  1CZ4 A;  1EU1 A;  1G8J A;  5FTL A;  2JA6 A;  4QIW A;  1H0H A;  1G8K A;  2V45 A;  2V3V A;  3HU2 A;  3QC8 A;  2R93 A;  3FKI A;  1TWG A;  3QQ7 A;  5FTJ A;  1IW7 D;  4KDL A;  1TWH A;  4KLN A;  4KDI A;  1CR5 A;  3QWZ A;  3TIW A;  1TWC A;  2R92 A;  1I50 A; 
#chains in the Genus database with same CATH topology
 4ENG A;  3HU3 A;  2PMZ A;  2VPX A;  1YNJ D;  2CW0 D;  2PIC A;  3IR5 A;  1PYQ A;  3SUM A;  3GTK A;  4JJO A;  4AZD A;  2A6E D;  4CRY G;  3X2J A;  2JA5 A;  2JIR A;  2BE5 D;  1PPY A;  4FER A;  1K83 A;  2KQA A;  2C45 A;  3GTQ A;  1HD5 A;  1PQH A;  2E7Z A;  2NAP A;  5FTN A;  2VUM A;  1VC3 B;  2BH0 A;  4GA6 A;  1E18 A;  2NVX A;  5EPP A;  3CQZ A;  1TWF A;  1BW3 A;  2R7Z A;  1WCM A;  4JCW A;  3ML1 A;  4KOD A;  1KQG A;  3X2P A;  3X2I A;  4NOH A;  1E61 A;  4GA5 A;  3TM7 B;  3H0G A;  4L48 A;  5C1B A;  2VPW A;  3OUG A;  3HU1 A;  1YNN D;  1R7R A;  4AAY A;  3GTM A;  2HCZ X;  1UHD A;  3CF2 A;  3ENG A;  3PLX B;  1TWA A;  1Q16 A;  3X2N A;  4ZM7 A;  1BW4 A;  4KO8 A;  1L8F A;  2WAQ A;  5C18 A;  3SUK A;  4AYB A;  2PNW A;  1AW8 B;  4FG2 A;  2IV2 X;  4CRZ A;  1AA6 A;  5DYG A;  3GTL A;  2YU9 A;  4FFT A;  2JA7 A;  1CZ5 A;  1S3S A;  5B6C A;  2VPZ A;  1I3Q A;  3GTJ A;  1E5V A;  3IR6 A;  3SUJ A;  2EEO B;  1Y4Z A;  1OA9 A;  1ZYR D;  1R27 A;  4CS0 A;  3GTP A;  2WB1 A;  5GLX A;  5T5I D;  2Y0S A;  3DMR A;  3X2H A;  3IR7 A;  1OGY A;  3M3G A;  1SIW A;  2NYA A;  3CZB A;  5H4U A;  1E60 A;  2KI8 A;  3SUL A;  1DMS A;  3GTO A;  4JS7 A;  2JIQ A;  4AON B;  1QCS A;  2JIO A;  1SMY D;  1Y1V A;  1N10 A;  2JIM A;  2VPY A;  1H5N A;  4RV0 A;  1FDO A;  1PT1 A;  2B63 A;  2JIP A;  3HKZ A;  4DMR A;  1KQF A;  5DYI A;  1QDN A;  1YLE A;  5GM9 A;  1FDI A;  1ZC1 A;  2A68 D;  2PJJ A;  5GLF A;  1Y1W A;  5FTM A;  2DMR A;  3QQ8 A;  1OA7 A;  1TMO A;  2E2H A;  1PQF A;  1DMR A;  2YUJ A;  1UHE A;  2PI8 A;  2A69 D;  1PQE A;  2PJH B;  3O5A A;  5T5M D;  3GTG A;  2NVY A;  4D7Z B;  1SFO A;  1PYU B;  4C2M A;  1WC2 A;  3X2L A;  1E32 A;  5FTK A;  4AOK B;  1PT0 A;  3X2G A;  3D30 A;  1Y5I A;  1R9T A;  2E2I A;  1WLF A;  1CZ4 A;  1EU1 A;  1G8J A;  4JP7 A;  5FTL A;  2JA6 A;  4QIW A;  1H0H A;  1G8K A;  2V45 A;  4JP6 A;  2V3V A;  2A6H D;  3HU2 A;  3QC8 A;  5GLY A;  2G6G A;  2AE0 X;  2O5J D;  2R93 A;  4FG4 A;  3X2O A;  3FKI A;  1TWG A;  2GAE A;  3QQ7 A;  5FTJ A;  1IW7 D;  3X2K A;  4KDL A;  1TWH A;  4KLN A;  3X2M A;  4KDI A;  4AVR A;  1CR5 A;  3QWZ A;  3TIW A;  2G5D A;  1TWC A;  2ENG A;  2R92 A;  1I50 A; 
#chains in the Genus database with same CATH homology
 3HU3 A;  2PMZ A;  2VPX A;  1YNJ D;  2CW0 D;  2PIC A;  3IR5 A;  1PYQ A;  3GTK A;  4AZD A;  2A6E D;  4CRY G;  2JA5 A;  2JIR A;  2BE5 D;  1PPY A;  1K83 A;  2C45 A;  3GTQ A;  1PQH A;  2E7Z A;  2NAP A;  5FTN A;  2VUM A;  1VC3 B;  4GA6 A;  1E18 A;  2NVX A;  5EPP A;  3CQZ A;  1TWF A;  2R7Z A;  1WCM A;  3ML1 A;  4KOD A;  1KQG A;  4NOH A;  1E61 A;  4GA5 A;  3TM7 B;  3H0G A;  5C1B A;  2VPW A;  3OUG A;  3HU1 A;  1YNN D;  1R7R A;  4AAY A;  3GTM A;  1UHD A;  3CF2 A;  3PLX B;  1TWA A;  1Q16 A;  4KO8 A;  2WAQ A;  5C18 A;  4AYB A;  2PNW A;  1AW8 B;  2IV2 X;  4CRZ A;  1AA6 A;  5DYG A;  3GTL A;  2YU9 A;  2JA7 A;  1CZ5 A;  1S3S A;  5B6C A;  2VPZ A;  1I3Q A;  3GTJ A;  1E5V A;  3IR6 A;  2EEO B;  1Y4Z A;  4CS0 A;  1ZYR D;  1R27 A;  3GTP A;  2WB1 A;  5T5I D;  2Y0S A;  3DMR A;  3IR7 A;  1OGY A;  1SIW A;  2NYA A;  3CZB A;  1E60 A;  2KI8 A;  1DMS A;  3GTO A;  2JIQ A;  4AON B;  1QCS A;  2JIO A;  1SMY D;  1Y1V A;  2JIM A;  2VPY A;  1H5N A;  4RV0 A;  1FDO A;  1PT1 A;  2B63 A;  2JIP A;  3HKZ A;  4DMR A;  1KQF A;  5DYI A;  1QDN A;  1YLE A;  1FDI A;  1ZC1 A;  2A68 D;  2PJJ A;  5GLF A;  1Y1W A;  5FTM A;  2DMR A;  3QQ8 A;  1TMO A;  2E2H A;  1PQF A;  1DMR A;  2YUJ A;  1UHE A;  2PI8 A;  2A69 D;  1PQE A;  2PJH B;  3O5A A;  5T5M D;  3GTG A;  2NVY A;  4D7Z B;  1SFO A;  1PYU B;  4C2M A;  1E32 A;  5FTK A;  4AOK B;  1PT0 A;  1Y5I A;  1R9T A;  2E2I A;  1WLF A;  1CZ4 A;  1EU1 A;  1G8J A;  5FTL A;  2JA6 A;  4QIW A;  1H0H A;  1G8K A;  2V45 A;  2V3V A;  2A6H D;  3HU2 A;  3QC8 A;  2G6G A;  2AE0 X;  2O5J D;  2R93 A;  3FKI A;  1TWG A;  2GAE A;  3QQ7 A;  5FTJ A;  1IW7 D;  4KDL A;  1TWH A;  4KLN A;  4KDI A;  1CR5 A;  3QWZ A;  3TIW A;  2G5D A;  1TWC A;  2R92 A;  1I50 A; 
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