4CRZ | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	127
structure length	126
Chain Sequence	SMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Escherichia coli k-12
publication title	The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A. pubmed doi rcsb
molecule keywords	ASPARTATE 1-DECARBOXYLASE
total genus	35
structure length	126
sequence length	127
ec nomenclature	ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date	2014-03-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02261	Asp_decarbox	Aspartate decarboxylase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases	Barwin-like endoglucanases	4crzA00

1E32A 1KQGA 2NVYA 4AONB 1R9TA 3FKIA 3HKZA 1TMOA 1PT0A 2V3VA 1Y1WA 3IR5A 1K83A 2E7ZA 5C18A 3H0GA 4AAYA 2R93A 1H0HA 3O5AA 1PQEA 2B63A 4KODA 3TIWA 3GTMA 2WB1A 5EPPA 1Q16A 4KDLA 2NAPA 1WLFA 5FTMA 2WAQA 2E2HA 5C1BA 1G8JA 5DYIA 3GTPA 4KDIA 5FTLA 1R27A 5DYGA 2NVXA 4CRZA 5GLFA 2C45A 2EEOB 1H5NA 3GTQA 4GA6A 2E2IA 2JA5A 1PT1A 4AOKB 1TWHA 2VPYA 2YU9A 1CR5A 3QQ7A 2R7ZA 1VC3B 1UHEA 2VPZA 2JIQA 1PQFA 3QC8A 1S3SA 1IW7D 1PYUB 2JIOA 2KI8A 4KLNA 1CZ4A 1OGYA 1TWAA 1Y5IA 1DMRA 4GA5A 1EU1A 3GTLA 4DMRA 1YLEA 2VPWA 5T5ID 2JA6A 3TM7B 4CRYG 3GTKA 3OUGA 2IV2X 4C2MA 1QCSA 2DMRA 1QDNA 1PPYA 1SIWA 4AYBA 1AW8B 3HU2A 2VPXA 1SFOA 1TWCA 5FTNA 5T5MD 1KQFA 3ML1A 5B6CA 3PLXB 1WCMA 1TWGA 3IR7A 4QIWA 1AA6A 1FDIA 1R7RA 4KO8A 1E5VA 1TWFA 3CQZA 1I3QA 3GTOA 2Y0SA 2JIMA 4RV0A 3QQ8A 1E18A 1E60A 3HU3A 1I50A 4CS0A 3CF2A 3QWZA 1CZ5A 2PJHB 1E61A 1FDOA 4AZDA 2JIRA 4D7ZB 5FTKA 1UHDA 2R92A 1Y4ZA 3GTGA 2VUMA 1G8KA 2V45A 1PQHA 3GTJA 2NYAA 2JA7A 2PMZA 1PYQA 1DMSA 1Y1VA 3DMRA 3HU1A 2JIPA 5FTJA 3IR6A
chains in the Genus database with same CATH superfamily

2G5DA 1E32A 3X2PA 2CW0D 1KQGA 5GLXA 2PJJA 2NVYA 3SUMA 4AONB 1L8FA 1R9TA 3FKIA 4FERA 2KQAA 3HKZA 1OA9A 1TMOA 5H4UA 1PT0A 4JJOA 2V3VA 1ZC1A 1Y1WA 3IR5A 3SULA 1K83A 2E7ZA 5C18A 3H0GA 4AAYA 2R93A 1H0HA 3O5AA 1PQEA 2A6ED 4KODA 2B63A 4AVRA 3TIWA 3GTMA 2WB1A 5EPPA 2O5JD 1Q16A 2A68D 4KDLA 2NAPA 1WLFA 4FFTA 2G6GA 2WAQA 5FTMA 2PICA 2E2HA 2HCZX 3ENGA 5C1BA 1G8JA 5DYIA 3GTPA 4NOHA 4KDIA 5FTLA 1R27A 5DYGA 4ZM7A 2NVXA 1YNND 5GLFA 4CRZA 2C45A 2EEOB 1H5NA 3SUKA 3GTQA 4GA6A 2E2IA 4JS7A 1ZYRD 2JA5A 1PT1A 1BW4A 4AOKB 1TWHA 2VPYA 5GM9A 1N10A 2YU9A 1CR5A 1WC2A 3QQ7A 2R7ZA 1VC3B 3X2JA 1UHEA 4FG2A 2VPZA 2A69D 1BW3A 4JCWA 2JIQA 1PQFA 1SMYD 3QC8A 1S3SA 1IW7D 1HD5A 1PYUB 2AE0X 2KI8A 2JIOA 1CZ4A 2PNWA 4KLNA 1OGYA 1TWAA 3X2IA 1Y5IA 1DMRA 4GA5A 2A6HD 1EU1A 3GTLA 2BH0A 4DMRA 1YLEA 2VPWA 5T5ID 3SUJA 2JA6A 2GAEA 3TM7B 4CRYG 3GTKA 4L48A 3OUGA 2IV2X 3X2LA 3X2HA 4C2MA 1QCSA 2DMRA 1QDNA 1PPYA 1SIWA 3X2OA 1OA7A 4AYBA 1AW8B 4JP6A 3HU2A 5GLYA 2VPXA 1SFOA 1TWCA 5FTNA 5T5MD 1KQFA 3ML1A 5B6CA 3PLXB 1WCMA 1TWGA 3IR7A 2YUJA 4QIWA 1AA6A 1FDIA 1R7RA 3X2MA 4KO8A 4JP7A 1E5VA 1YNJD 3D30A 1TWFA 3CQZA 1I3QA 3GTOA 2Y0SA 2JIMA 4RV0A 3QQ8A 3X2GA 1E18A 1E60A 3HU3A 3X2NA 1I50A 4CS0A 3CF2A 3QWZA 1CZ5A 2PJHB 1E61A 4ENGA 1FDOA 4FG4A 2JIRA 4AZDA 4D7ZB 5FTKA 1UHDA 2R92A 1Y4ZA 3GTGA 2VUMA 1G8KA 2V45A 2PI8A 3X2KA 1PQHA 3GTJA 2NYAA 2JA7A 1PYQA 2PMZA 3M3GA 1DMSA 2BE5D 1Y1VA 3DMRA 2ENGA 3CZBA 3HU1A 2JIPA 5FTJA 3IR6A
chains in the Genus database with same CATH topology

2G5DA 1E32A 2CW0D 1KQGA 2PJJA 2NVYA 4AONB 1R9TA 3FKIA 3HKZA 1TMOA 1PT0A 2V3VA 1ZC1A 1Y1WA 3IR5A 1K83A 2E7ZA 5C18A 3H0GA 4AAYA 2R93A 1H0HA 3O5AA 1PQEA 2A6ED 4KODA 2B63A 3TIWA 3GTMA 2WB1A 5EPPA 2O5JD 1Q16A 2A68D 4KDLA 2NAPA 1WLFA 5FTMA 2G6GA 2WAQA 2PICA 2E2HA 5C1BA 1G8JA 5DYIA 3GTPA 4NOHA 4KDIA 5FTLA 1R27A 5DYGA 2NVXA 1YNND 5GLFA 4CRZA 2C45A 2EEOB 1H5NA 3GTQA 4GA6A 2E2IA 1ZYRD 2JA5A 1PT1A 4AOKB 1TWHA 2VPYA 2YU9A 1CR5A 3QQ7A 2R7ZA 1VC3B 1UHEA 2VPZA 2A69D 2JIQA 1PQFA 1SMYD 3QC8A 1S3SA 1IW7D 1PYUB 2AE0X 2KI8A 2JIOA 2PNWA 1CZ4A 4KLNA 1OGYA 1TWAA 1Y5IA 1DMRA 4GA5A 2A6HD 1EU1A 3GTLA 4DMRA 1YLEA 2VPWA 5T5ID 2JA6A 2GAEA 3TM7B 4CRYG 3GTKA 3OUGA 2IV2X 4C2MA 1QCSA 2DMRA 1QDNA 1PPYA 1SIWA 4AYBA 1AW8B 3HU2A 2VPXA 1SFOA 1TWCA 5FTNA 5T5MD 1KQFA 3ML1A 5B6CA 3PLXB 1WCMA 1TWGA 3IR7A 2YUJA 4QIWA 1AA6A 1FDIA 1R7RA 4KO8A 1E5VA 1YNJD 1TWFA 3CQZA 1I3QA 3GTOA 2Y0SA 2JIMA 4RV0A 3QQ8A 1E18A 1E60A 3HU3A 1I50A 4CS0A 3CF2A 3QWZA 1CZ5A 2PJHB 1E61A 1FDOA 4AZDA 2JIRA 4D7ZB 5FTKA 1UHDA 2R92A 1Y4ZA 3GTGA 2VUMA 1G8KA 2V45A 2PI8A 1PQHA 3GTJA 2NYAA 2JA7A 1PYQA 2PMZA 1DMSA 2BE5D 1Y1VA 3DMRA 3HU1A 3CZBA 2JIPA 5FTJA 3IR6A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1E32 A;  1KQG A;  2NVY A;  4AON B;  1R9T A;  3FKI A;  3HKZ A;  1TMO A;  1PT0 A;  2V3V A;  1Y1W A;  3IR5 A;  1K83 A;  2E7Z A;  5C18 A;  3H0G A;  4AAY A;  2R93 A;  1H0H A;  3O5A A;  1PQE A;  2B63 A;  4KOD A;  3TIW A;  3GTM A;  2WB1 A;  5EPP A;  1Q16 A;  4KDL A;  2NAP A;  1WLF A;  5FTM A;  2WAQ A;  2E2H A;  5C1B A;  1G8J A;  5DYI A;  3GTP A;  4KDI A;  5FTL A;  1R27 A;  5DYG A;  2NVX A;  4CRZ A;  5GLF A;  2C45 A;  2EEO B;  1H5N A;  3GTQ A;  4GA6 A;  2E2I A;  2JA5 A;  1PT1 A;  4AOK B;  1TWH A;  2VPY A;  2YU9 A;  1CR5 A;  3QQ7 A;  2R7Z A;  1VC3 B;  1UHE A;  2VPZ A;  2JIQ A;  1PQF A;  3QC8 A;  1S3S A;  1IW7 D;  1PYU B;  2JIO A;  2KI8 A;  4KLN A;  1CZ4 A;  1OGY A;  1TWA A;  1Y5I A;  1DMR A;  4GA5 A;  1EU1 A;  3GTL A;  4DMR A;  1YLE A;  2VPW A;  5T5I D;  2JA6 A;  3TM7 B;  4CRY G;  3GTK A;  3OUG A;  2IV2 X;  4C2M A;  1QCS A;  2DMR A;  1QDN A;  1PPY A;  1SIW A;  4AYB A;  1AW8 B;  3HU2 A;  2VPX A;  1SFO A;  1TWC A;  5FTN A;  5T5M D;  1KQF A;  3ML1 A;  5B6C A;  3PLX B;  1WCM A;  1TWG A;  3IR7 A;  4QIW A;  1AA6 A;  1FDI A;  1R7R A;  4KO8 A;  1E5V A;  1TWF A;  3CQZ A;  1I3Q A;  3GTO A;  2Y0S A;  2JIM A;  4RV0 A;  3QQ8 A;  1E18 A;  1E60 A;  3HU3 A;  1I50 A;  4CS0 A;  3CF2 A;  3QWZ A;  1CZ5 A;  2PJH B;  1E61 A;  1FDO A;  4AZD A;  2JIR A;  4D7Z B;  5FTK A;  1UHD A;  2R92 A;  1Y4Z A;  3GTG A;  2VUM A;  1G8K A;  2V45 A;  1PQH A;  3GTJ A;  2NYA A;  2JA7 A;  2PMZ A;  1PYQ A;  1DMS A;  1Y1V A;  3DMR A;  3HU1 A;  2JIP A;  5FTJ A;  3IR6 A; 
#chains in the Genus database with same CATH topology
 2G5D A;  1E32 A;  3X2P A;  2CW0 D;  1KQG A;  5GLX A;  2PJJ A;  2NVY A;  3SUM A;  4AON B;  1L8F A;  1R9T A;  3FKI A;  4FER A;  2KQA A;  3HKZ A;  1OA9 A;  1TMO A;  5H4U A;  1PT0 A;  4JJO A;  2V3V A;  1ZC1 A;  1Y1W A;  3IR5 A;  3SUL A;  1K83 A;  2E7Z A;  5C18 A;  3H0G A;  4AAY A;  2R93 A;  1H0H A;  3O5A A;  1PQE A;  2A6E D;  4KOD A;  2B63 A;  4AVR A;  3TIW A;  3GTM A;  2WB1 A;  5EPP A;  2O5J D;  1Q16 A;  2A68 D;  4KDL A;  2NAP A;  1WLF A;  4FFT A;  2G6G A;  2WAQ A;  5FTM A;  2PIC A;  2E2H A;  2HCZ X;  3ENG A;  5C1B A;  1G8J A;  5DYI A;  3GTP A;  4NOH A;  4KDI A;  5FTL A;  1R27 A;  5DYG A;  4ZM7 A;  2NVX A;  1YNN D;  5GLF A;  4CRZ A;  2C45 A;  2EEO B;  1H5N A;  3SUK A;  3GTQ A;  4GA6 A;  2E2I A;  4JS7 A;  1ZYR D;  2JA5 A;  1PT1 A;  1BW4 A;  4AOK B;  1TWH A;  2VPY A;  5GM9 A;  1N10 A;  2YU9 A;  1CR5 A;  1WC2 A;  3QQ7 A;  2R7Z A;  1VC3 B;  3X2J A;  1UHE A;  4FG2 A;  2VPZ A;  2A69 D;  1BW3 A;  4JCW A;  2JIQ A;  1PQF A;  1SMY D;  3QC8 A;  1S3S A;  1IW7 D;  1HD5 A;  1PYU B;  2AE0 X;  2KI8 A;  2JIO A;  1CZ4 A;  2PNW A;  4KLN A;  1OGY A;  1TWA A;  3X2I A;  1Y5I A;  1DMR A;  4GA5 A;  2A6H D;  1EU1 A;  3GTL A;  2BH0 A;  4DMR A;  1YLE A;  2VPW A;  5T5I D;  3SUJ A;  2JA6 A;  2GAE A;  3TM7 B;  4CRY G;  3GTK A;  4L48 A;  3OUG A;  2IV2 X;  3X2L A;  3X2H A;  4C2M A;  1QCS A;  2DMR A;  1QDN A;  1PPY A;  1SIW A;  3X2O A;  1OA7 A;  4AYB A;  1AW8 B;  4JP6 A;  3HU2 A;  5GLY A;  2VPX A;  1SFO A;  1TWC A;  5FTN A;  5T5M D;  1KQF A;  3ML1 A;  5B6C A;  3PLX B;  1WCM A;  1TWG A;  3IR7 A;  2YUJ A;  4QIW A;  1AA6 A;  1FDI A;  1R7R A;  3X2M A;  4KO8 A;  4JP7 A;  1E5V A;  1YNJ D;  3D30 A;  1TWF A;  3CQZ A;  1I3Q A;  3GTO A;  2Y0S A;  2JIM A;  4RV0 A;  3QQ8 A;  3X2G A;  1E18 A;  1E60 A;  3HU3 A;  3X2N A;  1I50 A;  4CS0 A;  3CF2 A;  3QWZ A;  1CZ5 A;  2PJH B;  1E61 A;  4ENG A;  1FDO A;  4FG4 A;  2JIR A;  4AZD A;  4D7Z B;  5FTK A;  1UHD A;  2R92 A;  1Y4Z A;  3GTG A;  2VUM A;  1G8K A;  2V45 A;  2PI8 A;  3X2K A;  1PQH A;  3GTJ A;  2NYA A;  2JA7 A;  1PYQ A;  2PMZ A;  3M3G A;  1DMS A;  2BE5 D;  1Y1V A;  3DMR A;  2ENG A;  3CZB A;  3HU1 A;  2JIP A;  5FTJ A;  3IR6 A; 
#chains in the Genus database with same CATH homology
 2G5D A;  1E32 A;  2CW0 D;  1KQG A;  2PJJ A;  2NVY A;  4AON B;  1R9T A;  3FKI A;  3HKZ A;  1TMO A;  1PT0 A;  2V3V A;  1ZC1 A;  1Y1W A;  3IR5 A;  1K83 A;  2E7Z A;  5C18 A;  3H0G A;  4AAY A;  2R93 A;  1H0H A;  3O5A A;  1PQE A;  2A6E D;  4KOD A;  2B63 A;  3TIW A;  3GTM A;  2WB1 A;  5EPP A;  2O5J D;  1Q16 A;  2A68 D;  4KDL A;  2NAP A;  1WLF A;  5FTM A;  2G6G A;  2WAQ A;  2PIC A;  2E2H A;  5C1B A;  1G8J A;  5DYI A;  3GTP A;  4NOH A;  4KDI A;  5FTL A;  1R27 A;  5DYG A;  2NVX A;  1YNN D;  5GLF A;  4CRZ A;  2C45 A;  2EEO B;  1H5N A;  3GTQ A;  4GA6 A;  2E2I A;  1ZYR D;  2JA5 A;  1PT1 A;  4AOK B;  1TWH A;  2VPY A;  2YU9 A;  1CR5 A;  3QQ7 A;  2R7Z A;  1VC3 B;  1UHE A;  2VPZ A;  2A69 D;  2JIQ A;  1PQF A;  1SMY D;  3QC8 A;  1S3S A;  1IW7 D;  1PYU B;  2AE0 X;  2KI8 A;  2JIO A;  2PNW A;  1CZ4 A;  4KLN A;  1OGY A;  1TWA A;  1Y5I A;  1DMR A;  4GA5 A;  2A6H D;  1EU1 A;  3GTL A;  4DMR A;  1YLE A;  2VPW A;  5T5I D;  2JA6 A;  2GAE A;  3TM7 B;  4CRY G;  3GTK A;  3OUG A;  2IV2 X;  4C2M A;  1QCS A;  2DMR A;  1QDN A;  1PPY A;  1SIW A;  4AYB A;  1AW8 B;  3HU2 A;  2VPX A;  1SFO A;  1TWC A;  5FTN A;  5T5M D;  1KQF A;  3ML1 A;  5B6C A;  3PLX B;  1WCM A;  1TWG A;  3IR7 A;  2YUJ A;  4QIW A;  1AA6 A;  1FDI A;  1R7R A;  4KO8 A;  1E5V A;  1YNJ D;  1TWF A;  3CQZ A;  1I3Q A;  3GTO A;  2Y0S A;  2JIM A;  4RV0 A;  3QQ8 A;  1E18 A;  1E60 A;  3HU3 A;  1I50 A;  4CS0 A;  3CF2 A;  3QWZ A;  1CZ5 A;  2PJH B;  1E61 A;  1FDO A;  4AZD A;  2JIR A;  4D7Z B;  5FTK A;  1UHD A;  2R92 A;  1Y4Z A;  3GTG A;  2VUM A;  1G8K A;  2V45 A;  2PI8 A;  1PQH A;  3GTJ A;  2NYA A;  2JA7 A;  1PYQ A;  2PMZ A;  1DMS A;  2BE5 D;  1Y1V A;  3DMR A;  3HU1 A;  3CZB A;  2JIP A;  5FTJ A;  3IR6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4CRZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations