4D7ZB

E. coli l-aspartate-alpha-decarboxylase mutant n72q to a resolution of 1.9 angstroms
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
CAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVQGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (27-29)TI2 (49-52)AH1 (30-36)S2 (42-48)TII1 (39-42)TI1 (48-51)EMPTYS3 (54-62)3H1 (73-77)TII3 (80-83)S5 (85-89)TII2 (63-66)S4 (69-70)Updating...
connected with : NaN
molecule tags Lyase
source organism Escherichia coli
publication title The Structure of the E. Coli L-Aspartate-Alpha-Decarboxylase Mutant N72Q to a Resolution of 1.9 Angstroms
rcsb
molecule keywords ASPARTATE 1-DECARBOXYLASE BETA CHAIN
total genus 22
structure length 94
sequence length 94
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-12-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4d7zB00
1TMOA 2NVYA 2WAQA 1R7RA 5C1BA 1Y1VA 1Y4ZA 3DMRA 3TM7B 1PT0A 2YU9A 5B6CA 1KQGA 5FTMA 5FTKA 5GLFA 1IW7D 1E61A 4CS0A 1TWHA 2C45A 1FDOA 3CF2A 5T5ID 4AONB 3IR7A 1Y1WA 2VUMA 1H0HA 4AZDA 1TWFA 2PMZA 3H0GA 1DMSA 1VC3B 5FTJA 2E2HA 1DMRA 2R92A 3HU3A 1QDNA 2VPYA 1KQFA 5EPPA 1R9TA 1CZ5A 3HKZA 4CRYG 1G8KA 1E18A 1G8JA 1TWAA 4KLNA 1CZ4A 5FTLA 2JIPA 4DMRA 2R7ZA 2NVXA 1PYUB 1PQEA 2WB1A 2JA5A 1AW8B 2JIQA 2VPZA 4AYBA 1TWGA 1I50A 3GTQA 2VPXA 4KODA 3IR5A 1SFOA 3GTKA 2JIMA 4C2MA 4KO8A 2NAPA 1SIWA 4KDLA 3PLXB 5DYIA 1FDIA 4AOKB 1Q16A 5DYGA 3HU1A 1H5NA 2E2IA 1TWCA 1I3QA 2JIOA 1S3SA 1UHEA 4GA6A 1PQFA 2PJHB 1QCSA 3IR6A 2NYAA 1AA6A 1Y5IA 2E7ZA 2JA6A 1EU1A 1WCMA 3HU2A 2IV2X 5C18A 2DMRA 4RV0A 1PYQA 2V45A 3FKIA 1PPYA 1YLEA 2KI8A 3GTMA 3TIWA 3O5AA 1PT1A 1UHDA 1WLFA 4AAYA 1PQHA 3QQ8A 2VPWA 2Y0SA 3QWZA 1OGYA 1E60A 3GTGA 3CQZA 1K83A 5T5MD 1CR5A 3GTLA 2JA7A 3ML1A 1E32A 1R27A 4D7ZB 2R93A 4QIWA 3GTJA 2B63A 2V3VA 4GA5A 2JIRA 4KDIA 3OUGA 2EEOB 3GTOA 1E5VA 3QQ7A 5FTNA 3QC8A 3GTPA 4CRZA
chains in the Genus database with same CATH superfamily
1TMOA 2NVYA 3CZBA 2WAQA 1R7RA 5C1BA 1Y1VA 5H4UA 1N10A 1Y4ZA 4NOHA 3DMRA 3TM7B 1PT0A 4FFTA 2YU9A 5B6CA 1KQGA 5FTMA 5FTKA 5GLFA 2A6HD 1IW7D 1E61A 5GLYA 4CS0A 1TWHA 2C45A 1FDOA 3CF2A 5T5ID 4AONB 3IR7A 1Y1WA 2BE5D 2VUMA 2PNWA 1H0HA 2A68D 1TWFA 2A6ED 2PMZA 3H0GA 1DMSA 1VC3B 5FTJA 1WC2A 3SUJA 2E2HA 4JCWA 1L8FA 2PI8A 4JJOA 1DMRA 2HCZX 2R92A 3HU3A 3X2GA 1QDNA 1ZC1A 3X2NA 2VPYA 1KQFA 5EPPA 4AZDA 1R9TA 1CZ5A 3HKZA 4CRYG 1G8KA 1E18A 1G8JA 1TWAA 4KLNA 1CZ4A 4AVRA 2JIPA 4DMRA 2R7ZA 2NVXA 1PYUB 1PQEA 2WB1A 3SUMA 2JA5A 1BW4A 4FERA 3X2HA 1YNJD 1AW8B 2JIQA 2VPZA 4JS7A 1TWGA 3X2KA 4AYBA 1I50A 3GTQA 2VPXA 4KODA 3IR5A 3X2PA 3SUKA 1SFOA 3GTKA 2JIMA 3X2MA 4KO8A 2GAEA 4C2MA 2NAPA 1SIWA 2BH0A 4KDLA 3PLXB 3X2JA 5DYIA 3SULA 1FDIA 2A69D 1ZYRD 4AOKB 1Q16A 1SMYD 5DYGA 3HU1A 1H5NA 4JP6A 2E2IA 2AE0X 2O5JD 2ENGA 1TWCA 4FG2A 1I3QA 2JIOA 1S3SA 3ENGA 1OA9A 1UHEA 2KQAA 4FG4A 4GA6A 1PQFA 2PJHB 1QCSA 3D30A 2G5DA 3IR6A 2NYAA 3M3GA 1AA6A 1Y5IA 2E7ZA 2G6GA 3X2LA 2JA6A 4L48A 1EU1A 1WCMA 1HD5A 3HU2A 2IV2X 5C18A 2DMRA 4RV0A 1PYQA 2V45A 3FKIA 1PPYA 1YLEA 2KI8A 3GTMA 3TIWA 1OA7A 3O5AA 1PT1A 1UHDA 1WLFA 4ZM7A 4AAYA 1PQHA 3QQ8A 2VPWA 2CW0D 2Y0SA 1OGYA 3QWZA 5GLXA 1E60A 1YNND 3CQZA 3X2IA 1K83A 5T5MD 3GTGA 1CR5A 3GTLA 5FTLA 2JA7A 2PJJA 3ML1A 1E32A 4JP7A 3X2OA 1R27A 4D7ZB 2R93A 2PICA 4QIWA 3GTJA 1BW3A 2B63A 2V3VA 4GA5A 2JIRA 4KDIA 3OUGA 2YUJA 2EEOB 3GTOA 1E5VA 3QQ7A 5GM9A 5FTNA 3QC8A 4ENGA 3GTPA 4CRZA
chains in the Genus database with same CATH topology
1TMOA 2NVYA 3CZBA 2WAQA 1R7RA 5C1BA 1Y1VA 1Y4ZA 4NOHA 3DMRA 3TM7B 1PT0A 2YU9A 5B6CA 1KQGA 5FTMA 5FTKA 5GLFA 2A6HD 1IW7D 1E61A 4CS0A 1TWHA 2C45A 1FDOA 3CF2A 5T5ID 4AONB 3IR7A 1Y1WA 2BE5D 2VUMA 2PNWA 1H0HA 2A68D 1TWFA 2A6ED 2PMZA 3H0GA 1DMSA 1VC3B 5FTJA 4AZDA 2E2HA 2PI8A 1DMRA 2R92A 3HU3A 1QDNA 1ZC1A 2VPYA 1KQFA 5EPPA 1R9TA 1CZ5A 3HKZA 4CRYG 1G8KA 1E18A 1G8JA 1TWAA 4KLNA 1CZ4A 5FTLA 2JIPA 4DMRA 2R7ZA 2NVXA 1PYUB 1PQEA 2WB1A 2JA5A 1YNJD 1AW8B 2JIQA 2VPZA 4AYBA 1TWGA 1I50A 3GTQA 2VPXA 4KODA 3IR5A 1SFOA 3GTKA 2JIMA 4C2MA 4KO8A 2GAEA 2NAPA 1SIWA 4KDLA 3PLXB 5DYIA 1FDIA 2A69D 1ZYRD 4AOKB 1Q16A 1SMYD 5DYGA 3HU1A 1H5NA 2E2IA 2AE0X 2O5JD 1TWCA 1I3QA 2JIOA 1S3SA 1UHEA 4GA6A 1PQFA 2PJHB 1QCSA 2G5DA 3IR6A 2NYAA 1AA6A 1Y5IA 2E7ZA 2G6GA 2JA6A 1EU1A 1WCMA 3HU2A 2IV2X 5C18A 2DMRA 4RV0A 1PYQA 2V45A 3FKIA 1PPYA 1YLEA 2KI8A 3GTMA 3TIWA 3O5AA 1PT1A 1UHDA 1WLFA 4AAYA 1PQHA 3QQ8A 2VPWA 2CW0D 2Y0SA 1OGYA 3QWZA 1E60A 1YNND 3CQZA 3GTGA 1K83A 5T5MD 1CR5A 3GTLA 2JA7A 2PJJA 3ML1A 1E32A 1R27A 4D7ZB 2R93A 2PICA 4QIWA 3GTJA 2B63A 2V3VA 4GA5A 2JIRA 4KDIA 3OUGA 2YUJA 2EEOB 3GTOA 1E5VA 3QQ7A 5FTNA 3QC8A 3GTPA 4CRZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TMO A;  2NVY A;  2WAQ A;  1R7R A;  5C1B A;  1Y1V A;  1Y4Z A;  3DMR A;  3TM7 B;  1PT0 A;  2YU9 A;  5B6C A;  1KQG A;  5FTM A;  5FTK A;  5GLF A;  1IW7 D;  1E61 A;  4CS0 A;  1TWH A;  2C45 A;  1FDO A;  3CF2 A;  5T5I D;  4AON B;  3IR7 A;  1Y1W A;  2VUM A;  1H0H A;  4AZD A;  1TWF A;  2PMZ A;  3H0G A;  1DMS A;  1VC3 B;  5FTJ A;  2E2H A;  1DMR A;  2R92 A;  3HU3 A;  1QDN A;  2VPY A;  1KQF A;  5EPP A;  1R9T A;  1CZ5 A;  3HKZ A;  4CRY G;  1G8K A;  1E18 A;  1G8J A;  1TWA A;  4KLN A;  1CZ4 A;  5FTL A;  2JIP A;  4DMR A;  2R7Z A;  2NVX A;  1PYU B;  1PQE A;  2WB1 A;  2JA5 A;  1AW8 B;  2JIQ A;  2VPZ A;  4AYB A;  1TWG A;  1I50 A;  3GTQ A;  2VPX A;  4KOD A;  3IR5 A;  1SFO A;  3GTK A;  2JIM A;  4C2M A;  4KO8 A;  2NAP A;  1SIW A;  4KDL A;  3PLX B;  5DYI A;  1FDI A;  4AOK B;  1Q16 A;  5DYG A;  3HU1 A;  1H5N A;  2E2I A;  1TWC A;  1I3Q A;  2JIO A;  1S3S A;  1UHE A;  4GA6 A;  1PQF A;  2PJH B;  1QCS A;  3IR6 A;  2NYA A;  1AA6 A;  1Y5I A;  2E7Z A;  2JA6 A;  1EU1 A;  1WCM A;  3HU2 A;  2IV2 X;  5C18 A;  2DMR A;  4RV0 A;  1PYQ A;  2V45 A;  3FKI A;  1PPY A;  1YLE A;  2KI8 A;  3GTM A;  3TIW A;  3O5A A;  1PT1 A;  1UHD A;  1WLF A;  4AAY A;  1PQH A;  3QQ8 A;  2VPW A;  2Y0S A;  3QWZ A;  1OGY A;  1E60 A;  3GTG A;  3CQZ A;  1K83 A;  5T5M D;  1CR5 A;  3GTL A;  2JA7 A;  3ML1 A;  1E32 A;  1R27 A;  4D7Z B;  2R93 A;  4QIW A;  3GTJ A;  2B63 A;  2V3V A;  4GA5 A;  2JIR A;  4KDI A;  3OUG A;  2EEO B;  3GTO A;  1E5V A;  3QQ7 A;  5FTN A;  3QC8 A;  3GTP A;  4CRZ A; 
#chains in the Genus database with same CATH topology
 1TMO A;  2NVY A;  3CZB A;  2WAQ A;  1R7R A;  5C1B A;  1Y1V A;  5H4U A;  1N10 A;  1Y4Z A;  4NOH A;  3DMR A;  3TM7 B;  1PT0 A;  4FFT A;  2YU9 A;  5B6C A;  1KQG A;  5FTM A;  5FTK A;  5GLF A;  2A6H D;  1IW7 D;  1E61 A;  5GLY A;  4CS0 A;  1TWH A;  2C45 A;  1FDO A;  3CF2 A;  5T5I D;  4AON B;  3IR7 A;  1Y1W A;  2BE5 D;  2VUM A;  2PNW A;  1H0H A;  2A68 D;  1TWF A;  2A6E D;  2PMZ A;  3H0G A;  1DMS A;  1VC3 B;  5FTJ A;  1WC2 A;  3SUJ A;  2E2H A;  4JCW A;  1L8F A;  2PI8 A;  4JJO A;  1DMR A;  2HCZ X;  2R92 A;  3HU3 A;  3X2G A;  1QDN A;  1ZC1 A;  3X2N A;  2VPY A;  1KQF A;  5EPP A;  4AZD A;  1R9T A;  1CZ5 A;  3HKZ A;  4CRY G;  1G8K A;  1E18 A;  1G8J A;  1TWA A;  4KLN A;  1CZ4 A;  4AVR A;  2JIP A;  4DMR A;  2R7Z A;  2NVX A;  1PYU B;  1PQE A;  2WB1 A;  3SUM A;  2JA5 A;  1BW4 A;  4FER A;  3X2H A;  1YNJ D;  1AW8 B;  2JIQ A;  2VPZ A;  4JS7 A;  1TWG A;  3X2K A;  4AYB A;  1I50 A;  3GTQ A;  2VPX A;  4KOD A;  3IR5 A;  3X2P A;  3SUK A;  1SFO A;  3GTK A;  2JIM A;  3X2M A;  4KO8 A;  2GAE A;  4C2M A;  2NAP A;  1SIW A;  2BH0 A;  4KDL A;  3PLX B;  3X2J A;  5DYI A;  3SUL A;  1FDI A;  2A69 D;  1ZYR D;  4AOK B;  1Q16 A;  1SMY D;  5DYG A;  3HU1 A;  1H5N A;  4JP6 A;  2E2I A;  2AE0 X;  2O5J D;  2ENG A;  1TWC A;  4FG2 A;  1I3Q A;  2JIO A;  1S3S A;  3ENG A;  1OA9 A;  1UHE A;  2KQA A;  4FG4 A;  4GA6 A;  1PQF A;  2PJH B;  1QCS A;  3D30 A;  2G5D A;  3IR6 A;  2NYA A;  3M3G A;  1AA6 A;  1Y5I A;  2E7Z A;  2G6G A;  3X2L A;  2JA6 A;  4L48 A;  1EU1 A;  1WCM A;  1HD5 A;  3HU2 A;  2IV2 X;  5C18 A;  2DMR A;  4RV0 A;  1PYQ A;  2V45 A;  3FKI A;  1PPY A;  1YLE A;  2KI8 A;  3GTM A;  3TIW A;  1OA7 A;  3O5A A;  1PT1 A;  1UHD A;  1WLF A;  4ZM7 A;  4AAY A;  1PQH A;  3QQ8 A;  2VPW A;  2CW0 D;  2Y0S A;  1OGY A;  3QWZ A;  5GLX A;  1E60 A;  1YNN D;  3CQZ A;  3X2I A;  1K83 A;  5T5M D;  3GTG A;  1CR5 A;  3GTL A;  5FTL A;  2JA7 A;  2PJJ A;  3ML1 A;  1E32 A;  4JP7 A;  3X2O A;  1R27 A;  4D7Z B;  2R93 A;  2PIC A;  4QIW A;  3GTJ A;  1BW3 A;  2B63 A;  2V3V A;  4GA5 A;  2JIR A;  4KDI A;  3OUG A;  2YUJ A;  2EEO B;  3GTO A;  1E5V A;  3QQ7 A;  5GM9 A;  5FTN A;  3QC8 A;  4ENG A;  3GTP A;  4CRZ A; 
#chains in the Genus database with same CATH homology
 1TMO A;  2NVY A;  3CZB A;  2WAQ A;  1R7R A;  5C1B A;  1Y1V A;  1Y4Z A;  4NOH A;  3DMR A;  3TM7 B;  1PT0 A;  2YU9 A;  5B6C A;  1KQG A;  5FTM A;  5FTK A;  5GLF A;  2A6H D;  1IW7 D;  1E61 A;  4CS0 A;  1TWH A;  2C45 A;  1FDO A;  3CF2 A;  5T5I D;  4AON B;  3IR7 A;  1Y1W A;  2BE5 D;  2VUM A;  2PNW A;  1H0H A;  2A68 D;  1TWF A;  2A6E D;  2PMZ A;  3H0G A;  1DMS A;  1VC3 B;  5FTJ A;  4AZD A;  2E2H A;  2PI8 A;  1DMR A;  2R92 A;  3HU3 A;  1QDN A;  1ZC1 A;  2VPY A;  1KQF A;  5EPP A;  1R9T A;  1CZ5 A;  3HKZ A;  4CRY G;  1G8K A;  1E18 A;  1G8J A;  1TWA A;  4KLN A;  1CZ4 A;  5FTL A;  2JIP A;  4DMR A;  2R7Z A;  2NVX A;  1PYU B;  1PQE A;  2WB1 A;  2JA5 A;  1YNJ D;  1AW8 B;  2JIQ A;  2VPZ A;  4AYB A;  1TWG A;  1I50 A;  3GTQ A;  2VPX A;  4KOD A;  3IR5 A;  1SFO A;  3GTK A;  2JIM A;  4C2M A;  4KO8 A;  2GAE A;  2NAP A;  1SIW A;  4KDL A;  3PLX B;  5DYI A;  1FDI A;  2A69 D;  1ZYR D;  4AOK B;  1Q16 A;  1SMY D;  5DYG A;  3HU1 A;  1H5N A;  2E2I A;  2AE0 X;  2O5J D;  1TWC A;  1I3Q A;  2JIO A;  1S3S A;  1UHE A;  4GA6 A;  1PQF A;  2PJH B;  1QCS A;  2G5D A;  3IR6 A;  2NYA A;  1AA6 A;  1Y5I A;  2E7Z A;  2G6G A;  2JA6 A;  1EU1 A;  1WCM A;  3HU2 A;  2IV2 X;  5C18 A;  2DMR A;  4RV0 A;  1PYQ A;  2V45 A;  3FKI A;  1PPY A;  1YLE A;  2KI8 A;  3GTM A;  3TIW A;  3O5A A;  1PT1 A;  1UHD A;  1WLF A;  4AAY A;  1PQH A;  3QQ8 A;  2VPW A;  2CW0 D;  2Y0S A;  1OGY A;  3QWZ A;  1E60 A;  1YNN D;  3CQZ A;  3GTG A;  1K83 A;  5T5M D;  1CR5 A;  3GTL A;  2JA7 A;  2PJJ A;  3ML1 A;  1E32 A;  1R27 A;  4D7Z B;  2R93 A;  2PIC A;  4QIW A;  3GTJ A;  2B63 A;  2V3V A;  4GA5 A;  2JIR A;  4KDI A;  3OUG A;  2YUJ A;  2EEO B;  3GTO A;  1E5V A;  3QQ7 A;  5FTN A;  3QC8 A;  3GTP A;  4CRZ A; 
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