5H4UA

Crystal structure of cellulase from antarctic springtail, cryptopygus antarcticus
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
208
structure length
208
Chain Sequence
LTSGSGVTTRYWDCCKPSCSWGGKASVTKPVRTCKANGNTTIDSNTQSGCNGGSSYVCNDQQPFTQGNVGYGFAAASISGQPESQTCCACYEMTFTNTAISGQKMIVQVTNTGSDLNGNHFDLMIPGGGVGIFNGCQSQWGAPSNGWGQRYGGISSQSECNQLPTSLRAGCNWRFGWFKNADNPSMKFTQVRCPTILTQKSQCVRTPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Genetic and Structural Characterization of a Thermo-Tolerant, Cold-Active, and Acidic Endo-beta-1,4-glucanase from Antarctic Springtail, Cryptopygus antarcticus.
pubmed doi rcsb
molecule tags Hydrolase
source organism Cryptopygus antarcticus
molecule keywords Endo-beta-1,4-glucanase
total genus 65
structure length 208
sequence length 208
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2016-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02015 Glyco_hydro_45 Glycosyl hydrolase family 45
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 5h4uA00
4L48A 1L8FA 1N10A 4JS7A 2ENGA 3D30A 2G6GA 3SUJA 3CZBA 4FFTA 3X2KA 3X2PA 2HCZX 4FG4A 3X2OA 3X2LA 3X2GA 3X2IA 1OA7A 3SULA 3X2MA 3X2NA 2KQAA 2G5DA 1WC2A 4FG2A 2PI8A 4JCWA 4JP7A 3M3GA 3SUMA 2PJJA 1BW4A 2BH0A 4FERA 5H4UA 4JP6A 2PNWA 3X2JA 4ENGA 2GAEA 3SUKA 1HD5A 5GM9A 2PICA 5GLXA 3X2HA 1OA9A 4JJOA 5GLYA 4ZM7A 1BW3A 2AE0X 3ENGA 4AVRA
chains in the Genus database with same CATH superfamily
1FDOA 2V3VA 2WAQA 4DMRA 3D30A 1E60A 3CZBA 3SUJA 2E2HA 2NAPA 3IR5A 5GLFA 3X2OA 1KQGA 1OGYA 1YNND 2A68D 3OUGA 1AA6A 3QQ8A 3QQ7A 4KDIA 4D7ZB 1I3QA 1SFOA 2JIPA 3QC8A 5FTLA 4KO8A 3GTJA 2A6ED 2VPXA 2G5DA 5FTMA 4JCWA 3M3GA 5EPPA 4FERA 4NOHA 1E32A 4JP6A 1TMOA 2A69D 1IW7D 1CZ4A 1UHEA 3TM7B 5GLXA 1WCMA 1DMSA 1AW8B 1YNJD 1PQEA 4FFTA 2E2IA 1CZ5A 4CRYG 4AYBA 1N10A 2JA5A 1E5VA 1E61A 5T5MD 1DMRA 1Y1VA 2BE5D 3X2KA 2NYAA 3X2PA 2HCZX 2IV2X 1TWCA 2EEOB 3IR6A 1R9TA 4KLNA 2VUMA 1OA7A 1PT1A 3GTGA 3X2MA 1PYUB 3X2NA 4C2MA 1QCSA 1K83A 2KQAA 2KI8A 1I50A 5C18A 2JA7A 3SUMA 4AZDA 2PJJA 3H0GA 2PNWA 1PPYA 3X2JA 1TWHA 2YUJA 2VPZA 1PYQA 1HD5A 2CW0D 2PICA 3CF2A 2Y0SA 5GLYA 1WLFA 4AAYA 3GTKA 2R7ZA 1G8KA 3ENGA 1Y1WA 1Y5IA 3GTLA 4AONB 2JIQA 4JS7A 2ENGA 4CS0A 2G6GA 5FTJA 1G8JA 1ZC1A 5C1BA 2JA6A 3X2LA 2VPWA 1Y4ZA 3X2GA 2R93A 3SULA 5FTNA 3HU1A 1PQHA 1FDIA 4FG2A 3ML1A 4JP7A 2PMZA 1BW4A 1TWAA 5B6CA 4ENGA 1SIWA 2PJHB 2NVYA 5GM9A 1TWFA 3X2HA 2DMRA 1OA9A 1YLEA 1UHDA 3DMRA 4GA5A 2AE0X 4ZM7A 1BW3A 4GA6A 1S3SA 4L48A 3O5AA 1L8FA 2JIOA 1KQFA 2VPYA 2YU9A 5FTKA 5T5ID 3IR7A 1CR5A 3GTOA 5DYIA 3QWZA 4FG4A 3CQZA 2R92A 3FKIA 4CRZA 1VC3B 3X2IA 2V45A 4QIWA 4RV0A 1R7RA 2JIRA 2JIMA 3HKZA 3PLXB 3HU3A 2NVXA 1WC2A 4AOKB 2PI8A 4KODA 3TIWA 5DYGA 1R27A 1SMYD 1Q16A 4KDLA 1QDNA 2BH0A 5H4UA 1E18A 3GTMA 2O5JD 2WB1A 1TWGA 2A6HD 2GAEA 3SUKA 3GTPA 2C45A 3HU2A 3GTQA 1H5NA 2E7ZA 2B63A 4JJOA 1PQFA 1PT0A 1H0HA 1ZYRD 1EU1A 4AVRA
chains in the Genus database with same CATH topology
4L48A 1L8FA 1N10A 4JS7A 2ENGA 3D30A 2G6GA 3SUJA 3CZBA 4FFTA 3X2KA 3X2PA 2HCZX 4FG4A 3X2OA 3X2LA 3X2GA 3X2IA 1OA7A 3SULA 3X2MA 3X2NA 2KQAA 2G5DA 1WC2A 4FG2A 2PI8A 4JCWA 4JP7A 3M3GA 3SUMA 2PJJA 1BW4A 2BH0A 4FERA 5H4UA 4JP6A 2PNWA 3X2JA 4ENGA 2GAEA 3SUKA 1HD5A 5GM9A 2PICA 5GLXA 3X2HA 1OA9A 4JJOA 5GLYA 4ZM7A 1BW3A 2AE0X 3ENGA 4AVRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L48 A;  1L8F A;  1N10 A;  4JS7 A;  2ENG A;  3D30 A;  2G6G A;  3SUJ A;  3CZB A;  4FFT A;  3X2K A;  3X2P A;  2HCZ X;  4FG4 A;  3X2O A;  3X2L A;  3X2G A;  3X2I A;  1OA7 A;  3SUL A;  3X2M A;  3X2N A;  2KQA A;  2G5D A;  1WC2 A;  4FG2 A;  2PI8 A;  4JCW A;  4JP7 A;  3M3G A;  3SUM A;  2PJJ A;  1BW4 A;  2BH0 A;  4FER A;  5H4U A;  4JP6 A;  2PNW A;  3X2J A;  4ENG A;  2GAE A;  3SUK A;  1HD5 A;  5GM9 A;  2PIC A;  5GLX A;  3X2H A;  1OA9 A;  4JJO A;  5GLY A;  4ZM7 A;  1BW3 A;  2AE0 X;  3ENG A;  4AVR A; 
#chains in the Genus database with same CATH topology
 1FDO A;  2V3V A;  2WAQ A;  4DMR A;  3D30 A;  1E60 A;  3CZB A;  3SUJ A;  2E2H A;  2NAP A;  3IR5 A;  5GLF A;  3X2O A;  1KQG A;  1OGY A;  1YNN D;  2A68 D;  3OUG A;  1AA6 A;  3QQ8 A;  3QQ7 A;  4KDI A;  4D7Z B;  1I3Q A;  1SFO A;  2JIP A;  3QC8 A;  5FTL A;  4KO8 A;  3GTJ A;  2A6E D;  2VPX A;  2G5D A;  5FTM A;  4JCW A;  3M3G A;  5EPP A;  4FER A;  4NOH A;  1E32 A;  4JP6 A;  1TMO A;  2A69 D;  1IW7 D;  1CZ4 A;  1UHE A;  3TM7 B;  5GLX A;  1WCM A;  1DMS A;  1AW8 B;  1YNJ D;  1PQE A;  4FFT A;  2E2I A;  1CZ5 A;  4CRY G;  4AYB A;  1N10 A;  2JA5 A;  1E5V A;  1E61 A;  5T5M D;  1DMR A;  1Y1V A;  2BE5 D;  3X2K A;  2NYA A;  3X2P A;  2HCZ X;  2IV2 X;  1TWC A;  2EEO B;  3IR6 A;  1R9T A;  4KLN A;  2VUM A;  1OA7 A;  1PT1 A;  3GTG A;  3X2M A;  1PYU B;  3X2N A;  4C2M A;  1QCS A;  1K83 A;  2KQA A;  2KI8 A;  1I50 A;  5C18 A;  2JA7 A;  3SUM A;  4AZD A;  2PJJ A;  3H0G A;  2PNW A;  1PPY A;  3X2J A;  1TWH A;  2YUJ A;  2VPZ A;  1PYQ A;  1HD5 A;  2CW0 D;  2PIC A;  3CF2 A;  2Y0S A;  5GLY A;  1WLF A;  4AAY A;  3GTK A;  2R7Z A;  1G8K A;  3ENG A;  1Y1W A;  1Y5I A;  3GTL A;  4AON B;  2JIQ A;  4JS7 A;  2ENG A;  4CS0 A;  2G6G A;  5FTJ A;  1G8J A;  1ZC1 A;  5C1B A;  2JA6 A;  3X2L A;  2VPW A;  1Y4Z A;  3X2G A;  2R93 A;  3SUL A;  5FTN A;  3HU1 A;  1PQH A;  1FDI A;  4FG2 A;  3ML1 A;  4JP7 A;  2PMZ A;  1BW4 A;  1TWA A;  5B6C A;  4ENG A;  1SIW A;  2PJH B;  2NVY A;  5GM9 A;  1TWF A;  3X2H A;  2DMR A;  1OA9 A;  1YLE A;  1UHD A;  3DMR A;  4GA5 A;  2AE0 X;  4ZM7 A;  1BW3 A;  4GA6 A;  1S3S A;  4L48 A;  3O5A A;  1L8F A;  2JIO A;  1KQF A;  2VPY A;  2YU9 A;  5FTK A;  5T5I D;  3IR7 A;  1CR5 A;  3GTO A;  5DYI A;  3QWZ A;  4FG4 A;  3CQZ A;  2R92 A;  3FKI A;  4CRZ A;  1VC3 B;  3X2I A;  2V45 A;  4QIW A;  4RV0 A;  1R7R A;  2JIR A;  2JIM A;  3HKZ A;  3PLX B;  3HU3 A;  2NVX A;  1WC2 A;  4AOK B;  2PI8 A;  4KOD A;  3TIW A;  5DYG A;  1R27 A;  1SMY D;  1Q16 A;  4KDL A;  1QDN A;  2BH0 A;  5H4U A;  1E18 A;  3GTM A;  2O5J D;  2WB1 A;  1TWG A;  2A6H D;  2GAE A;  3SUK A;  3GTP A;  2C45 A;  3HU2 A;  3GTQ A;  1H5N A;  2E7Z A;  2B63 A;  4JJO A;  1PQF A;  1PT0 A;  1H0H A;  1ZYR D;  1EU1 A;  4AVR A; 
#chains in the Genus database with same CATH homology
 4L48 A;  1L8F A;  1N10 A;  4JS7 A;  2ENG A;  3D30 A;  2G6G A;  3SUJ A;  3CZB A;  4FFT A;  3X2K A;  3X2P A;  2HCZ X;  4FG4 A;  3X2O A;  3X2L A;  3X2G A;  3X2I A;  1OA7 A;  3SUL A;  3X2M A;  3X2N A;  2KQA A;  2G5D A;  1WC2 A;  4FG2 A;  2PI8 A;  4JCW A;  4JP7 A;  3M3G A;  3SUM A;  2PJJ A;  1BW4 A;  2BH0 A;  4FER A;  5H4U A;  4JP6 A;  2PNW A;  3X2J A;  4ENG A;  2GAE A;  3SUK A;  1HD5 A;  5GM9 A;  2PIC A;  5GLX A;  3X2H A;  1OA9 A;  4JJO A;  5GLY A;  4ZM7 A;  1BW3 A;  2AE0 X;  3ENG A;  4AVR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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