5H4UA

Crystal structure of cellulase from antarctic springtail, cryptopygus antarcticus
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
208
structure length
208
Chain Sequence
LTSGSGVTTRYWDCCKPSCSWGGKASVTKPVRTCKANGNTTIDSNTQSGCNGGSSYVCNDQQPFTQGNVGYGFAAASISGQPESQTCCACYEMTFTNTAISGQKMIVQVTNTGSDLNGNHFDLMIPGGGVGIFNGCQSQWGAPSNGWGQRYGGISSQSECNQLPTSLRAGCNWRFGWFKNADNPSMKFTQVRCPTILTQKSQCVRTPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Genetic and Structural Characterization of a Thermo-Tolerant, Cold-Active, and Acidic Endo-beta-1,4-glucanase from Antarctic Springtail, Cryptopygus antarcticus.
pubmed doi rcsb
molecule tags Hydrolase
source organism Cryptopygus antarcticus
molecule keywords Endo-beta-1,4-glucanase
total genus 65
structure length 208
sequence length 208
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2016-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02015 Glyco_hydro_45 Glycosyl hydrolase family 45
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 5h4uA00
1BW3A 3X2PA 1WC2A 2HCZX 4JP7A 3X2HA 4JCWA 1HD5A 4FG4A 2G6GA 4AVRA 2AE0X 2PI8A 4L48A 3SULA 3X2IA 3X2LA 3X2KA 2PNWA 5GLYA 3CZBA 2PJJA 1N10A 4ZM7A 4FG2A 4JP6A 2KQAA 2BH0A 4FFTA 3D30A 1L8FA 3SUKA 3SUJA 4ENGA 4JJOA 1BW4A 4FERA 5GLXA 3M3GA 2ENGA 2G5DA 1OA7A 5GM9A 1OA9A 2GAEA 3X2MA 3X2JA 3ENGA 4JS7A 3SUMA 2PICA 5H4UA 3X2OA 3X2GA 3X2NA
chains in the Genus database with same CATH superfamily
1SFOA 2NAPA 1CZ4A 1HD5A 2JIMA 2C45A 1R7RA 1ZC1A 1DMSA 2PI8A 2A69D 3H0GA 5T5ID 2B63A 3X2IA 2JA6A 1G8JA 5FTMA 3X2LA 1PYQA 5DYGA 2O5JD 1PYUB 2BE5D 1N10A 3ML1A 3IR5A 4KO8A 1KQGA 5C18A 4FG2A 1AA6A 1CZ5A 3GTOA 1IW7D 3FKIA 4FFTA 1L8FA 2EEOB 3SUKA 1K83A 1TWCA 5GLXA 2JIPA 2VPYA 1E32A 2GAEA 1I50A 5FTKA 4RV0A 2JA7A 2V3VA 2PICA 4KDLA 1ZYRD 1VC3B 5H4UA 2IV2X 1PQHA 4AZDA 4CS0A 4D7ZB 2HCZX 1PQFA 3HU1A 4JP7A 1H5NA 2PMZA 2YUJA 2Y0SA 4AVRA 2NVXA 1FDOA 2DMRA 1CR5A 4QIWA 5FTJA 4L48A 2JIRA 5B6CA 2YU9A 1E5VA 5C1BA 5FTLA 4C2MA 3GTQA 5T5MD 3GTMA 2NVYA 1TWGA 2PJJA 1Y1WA 1OGYA 1SMYD 4CRYG 1QDNA 1BW4A 1WCMA 4JJOA 3QQ7A 4FERA 1FDIA 1YLEA 3M3GA 1UHEA 2A6ED 2ENGA 1OA7A 2G5DA 4GA5A 4AOKB 4AONB 3ENGA 2KI8A 2NYAA 3DMRA 4JS7A 2VPXA 1EU1A 1Y4ZA 4NOHA 5FTNA 1WC2A 1E60A 3TIWA 2WB1A 3X2HA 1PT1A 3IR6A 3CF2A 3GTLA 4AAYA 1R27A 3GTKA 1PT0A 2JA5A 3X2KA 2PNWA 1Y5IA 5GLYA 3GTGA 1S3SA 2R7ZA 3QQ8A 2VUMA 5EPPA 2VPWA 4JP6A 1Q16A 1TMOA 1H0HA 3D30A 1E18A 4KLNA 3SUJA 1AW8B 3HKZA 2V45A 3CQZA 3IR7A 3PLXB 5GLFA 1OA9A 5GM9A 3X2MA 3X2JA 1WLFA 1Y1VA 2CW0D 3QWZA 3HU2A 3SUMA 1PPYA 2JIOA 1DMRA 2E2IA 1UHDA 5DYIA 3GTJA 2E2HA 1PQEA 2VPZA 3X2PA 1BW3A 1TWAA 4JCWA 4FG4A 2JIQA 2G6GA 4KDIA 1E61A 2AE0X 2A68D 1R9TA 2WAQA 1KQFA 3SULA 1QCSA 1G8KA 4CRZA 4AYBA 3HU3A 1SIWA 1TWFA 3CZBA 2R92A 1TWHA 3O5AA 4ZM7A 1I3QA 2KQAA 2BH0A 3TM7B 4ENGA 2PJHB 2A6HD 4DMRA 3QC8A 3OUGA 4KODA 4GA6A 3GTPA 1YNJD 2E7ZA 2R93A 1YNND 3X2OA 3X2GA 3X2NA
chains in the Genus database with same CATH topology
1BW3A 3X2PA 1WC2A 2HCZX 4JP7A 3X2HA 4JCWA 1HD5A 4FG4A 2G6GA 4AVRA 2AE0X 2PI8A 4L48A 3SULA 3X2IA 3X2LA 3X2KA 2PNWA 5GLYA 3CZBA 2PJJA 1N10A 4ZM7A 4FG2A 4JP6A 2KQAA 2BH0A 4FFTA 3D30A 1L8FA 3SUKA 3SUJA 4ENGA 4JJOA 1BW4A 4FERA 5GLXA 3M3GA 2ENGA 2G5DA 1OA7A 5GM9A 1OA9A 2GAEA 3X2MA 3X2JA 3ENGA 4JS7A 3SUMA 2PICA 5H4UA 3X2OA 3X2GA 3X2NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BW3 A;  3X2P A;  1WC2 A;  2HCZ X;  4JP7 A;  3X2H A;  4JCW A;  1HD5 A;  4FG4 A;  2G6G A;  4AVR A;  2AE0 X;  2PI8 A;  4L48 A;  3SUL A;  3X2I A;  3X2L A;  3X2K A;  2PNW A;  5GLY A;  3CZB A;  2PJJ A;  1N10 A;  4ZM7 A;  4FG2 A;  4JP6 A;  2KQA A;  2BH0 A;  4FFT A;  3D30 A;  1L8F A;  3SUK A;  3SUJ A;  4ENG A;  4JJO A;  1BW4 A;  4FER A;  5GLX A;  3M3G A;  2ENG A;  2G5D A;  1OA7 A;  5GM9 A;  1OA9 A;  2GAE A;  3X2M A;  3X2J A;  3ENG A;  4JS7 A;  3SUM A;  2PIC A;  5H4U A;  3X2O A;  3X2G A;  3X2N A; 
#chains in the Genus database with same CATH topology
 1SFO A;  2NAP A;  1CZ4 A;  1HD5 A;  2JIM A;  2C45 A;  1R7R A;  1ZC1 A;  1DMS A;  2PI8 A;  2A69 D;  3H0G A;  5T5I D;  2B63 A;  3X2I A;  2JA6 A;  1G8J A;  5FTM A;  3X2L A;  1PYQ A;  5DYG A;  2O5J D;  1PYU B;  2BE5 D;  1N10 A;  3ML1 A;  3IR5 A;  4KO8 A;  1KQG A;  5C18 A;  4FG2 A;  1AA6 A;  1CZ5 A;  3GTO A;  1IW7 D;  3FKI A;  4FFT A;  1L8F A;  2EEO B;  3SUK A;  1K83 A;  1TWC A;  5GLX A;  2JIP A;  2VPY A;  1E32 A;  2GAE A;  1I50 A;  5FTK A;  4RV0 A;  2JA7 A;  2V3V A;  2PIC A;  4KDL A;  1ZYR D;  1VC3 B;  5H4U A;  2IV2 X;  1PQH A;  4AZD A;  4CS0 A;  4D7Z B;  2HCZ X;  1PQF A;  3HU1 A;  4JP7 A;  1H5N A;  2PMZ A;  2YUJ A;  2Y0S A;  4AVR A;  2NVX A;  1FDO A;  2DMR A;  1CR5 A;  4QIW A;  5FTJ A;  4L48 A;  2JIR A;  5B6C A;  2YU9 A;  1E5V A;  5C1B A;  5FTL A;  4C2M A;  3GTQ A;  5T5M D;  3GTM A;  2NVY A;  1TWG A;  2PJJ A;  1Y1W A;  1OGY A;  1SMY D;  4CRY G;  1QDN A;  1BW4 A;  1WCM A;  4JJO A;  3QQ7 A;  4FER A;  1FDI A;  1YLE A;  3M3G A;  1UHE A;  2A6E D;  2ENG A;  1OA7 A;  2G5D A;  4GA5 A;  4AOK B;  4AON B;  3ENG A;  2KI8 A;  2NYA A;  3DMR A;  4JS7 A;  2VPX A;  1EU1 A;  1Y4Z A;  4NOH A;  5FTN A;  1WC2 A;  1E60 A;  3TIW A;  2WB1 A;  3X2H A;  1PT1 A;  3IR6 A;  3CF2 A;  3GTL A;  4AAY A;  1R27 A;  3GTK A;  1PT0 A;  2JA5 A;  3X2K A;  2PNW A;  1Y5I A;  5GLY A;  3GTG A;  1S3S A;  2R7Z A;  3QQ8 A;  2VUM A;  5EPP A;  2VPW A;  4JP6 A;  1Q16 A;  1TMO A;  1H0H A;  3D30 A;  1E18 A;  4KLN A;  3SUJ A;  1AW8 B;  3HKZ A;  2V45 A;  3CQZ A;  3IR7 A;  3PLX B;  5GLF A;  1OA9 A;  5GM9 A;  3X2M A;  3X2J A;  1WLF A;  1Y1V A;  2CW0 D;  3QWZ A;  3HU2 A;  3SUM A;  1PPY A;  2JIO A;  1DMR A;  2E2I A;  1UHD A;  5DYI A;  3GTJ A;  2E2H A;  1PQE A;  2VPZ A;  3X2P A;  1BW3 A;  1TWA A;  4JCW A;  4FG4 A;  2JIQ A;  2G6G A;  4KDI A;  1E61 A;  2AE0 X;  2A68 D;  1R9T A;  2WAQ A;  1KQF A;  3SUL A;  1QCS A;  1G8K A;  4CRZ A;  4AYB A;  3HU3 A;  1SIW A;  1TWF A;  3CZB A;  2R92 A;  1TWH A;  3O5A A;  4ZM7 A;  1I3Q A;  2KQA A;  2BH0 A;  3TM7 B;  4ENG A;  2PJH B;  2A6H D;  4DMR A;  3QC8 A;  3OUG A;  4KOD A;  4GA6 A;  3GTP A;  1YNJ D;  2E7Z A;  2R93 A;  1YNN D;  3X2O A;  3X2G A;  3X2N A; 
#chains in the Genus database with same CATH homology
 1BW3 A;  3X2P A;  1WC2 A;  2HCZ X;  4JP7 A;  3X2H A;  4JCW A;  1HD5 A;  4FG4 A;  2G6G A;  4AVR A;  2AE0 X;  2PI8 A;  4L48 A;  3SUL A;  3X2I A;  3X2L A;  3X2K A;  2PNW A;  5GLY A;  3CZB A;  2PJJ A;  1N10 A;  4ZM7 A;  4FG2 A;  4JP6 A;  2KQA A;  2BH0 A;  4FFT A;  3D30 A;  1L8F A;  3SUK A;  3SUJ A;  4ENG A;  4JJO A;  1BW4 A;  4FER A;  5GLX A;  3M3G A;  2ENG A;  2G5D A;  1OA7 A;  5GM9 A;  1OA9 A;  2GAE A;  3X2M A;  3X2J A;  3ENG A;  4JS7 A;  3SUM A;  2PIC A;  5H4U A;  3X2O A;  3X2G A;  3X2N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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