The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
69
|
sequence length |
213
|
structure length |
213
|
Chain Sequence |
ASGSGQSTRYWDCCKPSCAWPGKAAVSQPVYACDANFQRLSDFNVQSGCNGGSAYSCADQTPWAVNDNLAYGFAATSIAGGSESSWCCACYALTFTSGPVAGKTMVVQSTSTGGDLGSNQFDIAMPGGGVGIFNGCSSQFGGLPGAQYGGISSRDQCDSFPAPLKPGCQWRFDWFQNADNPTFTFQQVQCPAEIVARSGCKRNDDSSFPVFTP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Characterization and crystal structure of a thermostable glycoside hydrolase family 45 1,4-beta-endoglucanase from Thielavia terrestris
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Thielavia terrestris nrrl 8126
|
| molecule keywords |
Glycoside hydrolase family 45 protein
|
| total genus |
69
|
| structure length |
213
|
| sequence length |
213
|
| ec nomenclature | |
| pdb deposition date | 2016-07-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02015 | Glyco_hydro_45 | Glycosyl hydrolase family 45 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Barwin-like endoglucanases | RlpA-like domain |
#chains in the Genus database with same CATH superfamily 4AVR A; 3X2L A; 2AE0 X; 3X2N A; 3X2M A; 3SUJ A; 3X2I A; 4JS7 A; 3X2G A; 2GAE A; 2G5D A; 2HCZ X; 2PJJ A; 3CZB A; 5GM9 A; 5H4U A; 4FG2 A; 4JJO A; 1BW4 A; 3D30 A; 5GLX A; 4FG4 A; 1OA9 A; 4L48 A; 4ZM7 A; 3X2O A; 2PIC A; 4JP6 A; 1HD5 A; 2KQA A; 1N10 A; 4FFT A; 3ENG A; 5GLY A; 2ENG A; 3SUK A; 3SUL A; 3SUM A; 3X2H A; 1L8F A; 3X2P A; 1BW3 A; 2G6G A; 1WC2 A; 2BH0 A; 2PI8 A; 4FER A; 4JCW A; 4JP7 A; 3X2J A; 4ENG A; 2PNW A; 3M3G A; 1OA7 A; 3X2K A; #chains in the Genus database with same CATH topology 1WCM A; 1TWC A; 1QDN A; 5C1B A; 2AE0 X; 1Y1W A; 2R93 A; 3HU3 A; 4KDI A; 3QQ8 A; 3IR6 A; 2E2I A; 5FTM A; 3PLX B; 5DYI A; 2VPW A; 3HKZ A; 2IV2 X; 5GM9 A; 5C18 A; 4JJO A; 1BW4 A; 1UHE A; 5GLX A; 5T5M D; 2A69 D; 1R27 A; 4FG4 A; 1YNJ D; 1UHD A; 1OGY A; 1IW7 D; 2YU9 A; 5B6C A; 2VUM A; 1HD5 A; 1Y5I A; 2JA7 A; 3ML1 A; 2EEO B; 2CW0 D; 2JA6 A; 1N10 A; 5GLY A; 1PQH A; 3ENG A; 2ENG A; 3SUL A; 4RV0 A; 3X2P A; 1BW3 A; 2JIM A; 1PT0 A; 2G6G A; 2PI8 A; 2PMZ A; 1R9T A; 3GTJ A; 3GTM A; 1ZC1 A; 5FTK A; 4AVR A; 1SMY D; 3TIW A; 3O5A A; 3X2L A; 1PT1 A; 3GTP A; 1ZYR D; 1CR5 A; 1R7R A; 4AOK B; 4AAY A; 2NAP A; 5FTL A; 1TMO A; 4KLN A; 3X2G A; 2G5D A; 3CZB A; 4FG2 A; 1H5N A; 2BE5 D; 2JA5 A; 3GTL A; 4CRZ A; 2YUJ A; 2JIQ A; 5FTN A; 3OUG A; 4JP6 A; 2A68 D; 2Y0S A; 4AYB A; 1Y1V A; 4KOD A; 5DYG A; 2V3V A; 4FFT A; 3X2H A; 2C45 A; 3SUM A; 1L8F A; 5EPP A; 1PYQ A; 2PJH B; 5FTJ A; 5GLF A; 5T5I D; 2BH0 A; 1TWA A; 4FER A; 2DMR A; 3X2J A; 4GA6 A; 4D7Z B; 3M3G A; 4KDL A; 2O5J D; 1YNN D; 3CF2 A; 1KQF A; 1CZ4 A; 1VC3 B; 2WAQ A; 1TWF A; 1DMR A; 4DMR A; 3X2M A; 1CZ5 A; 2WB1 A; 1TWG A; 4QIW A; 1KQG A; 1I50 A; 2NYA A; 3SUJ A; 1H0H A; 3GTO A; 1FDI A; 3TM7 B; 1WLF A; 4ENG A; 2HCZ X; 1S3S A; 2PJJ A; 5H4U A; 1K83 A; 1E60 A; 3D30 A; 1Q16 A; 1PQE A; 1EU1 A; 3DMR A; 1OA9 A; 4CRY G; 2JIO A; 4L48 A; 4AZD A; 4ZM7 A; 3HU1 A; 1G8J A; 2VPZ A; 4CS0 A; 2E2H A; 2KQA A; 2VPY A; 1DMS A; 1E32 A; 3SUK A; 1QCS A; 1SIW A; 2KI8 A; 3QQ7 A; 1PQF A; 2VPX A; 4JP7 A; 4AON B; 3IR5 A; 3GTK A; 2A6H D; 2PNW A; 1OA7 A; 3X2K A; 1PYU B; 3H0G A; 3GTQ A; 3HU2 A; 1FDO A; 1Y4Z A; 3X2N A; 1E61 A; 3CQZ A; 3FKI A; 3QC8 A; 3QWZ A; 2R92 A; 4NOH A; 1YLE A; 2B63 A; 3X2I A; 4KO8 A; 3GTG A; 4JS7 A; 2GAE A; 2JIP A; 2E7Z A; 1AW8 B; 4C2M A; 3IR7 A; 2NVY A; 1AA6 A; 3X2O A; 2A6E D; 2PIC A; 4GA5 A; 1G8K A; 1TWH A; 1SFO A; 1I3Q A; 1PPY A; 2R7Z A; 1E18 A; 1E5V A; 2JIR A; 1WC2 A; 4JCW A; 2NVX A; 2V45 A; #chains in the Genus database with same CATH homology 4AVR A; 3X2L A; 2AE0 X; 3X2N A; 3X2M A; 3SUJ A; 3X2I A; 4JS7 A; 3X2G A; 2GAE A; 2G5D A; 2HCZ X; 2PJJ A; 3CZB A; 5GM9 A; 5H4U A; 4FG2 A; 4JJO A; 1BW4 A; 3D30 A; 5GLX A; 4FG4 A; 1OA9 A; 4L48 A; 4ZM7 A; 3X2O A; 2PIC A; 4JP6 A; 1HD5 A; 2KQA A; 1N10 A; 4FFT A; 3ENG A; 5GLY A; 2ENG A; 3SUK A; 3SUL A; 3SUM A; 3X2H A; 1L8F A; 3X2P A; 1BW3 A; 2G6G A; 1WC2 A; 2BH0 A; 2PI8 A; 4FER A; 4JCW A; 4JP7 A; 3X2J A; 4ENG A; 2PNW A; 3M3G A; 1OA7 A; 3X2K A;
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