1YGTA

Dynein light chain tctex-1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
104
structure length
104
Chain Sequence
SQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of dynein light chain TcTex-1.
pubmed doi rcsb
molecule tags Protein transport
source organism Drosophila melanogaster
molecule keywords Cytoplasmic dynein light chain
total genus 25
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2005-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03645 Tctex-1 Tctex-1 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1140.40 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain Ribosomal protein S3 C-terminal domain 1ygtA01
2PG1E 3FM7A 1XDXA 1YGTA
chains in the Genus database with same CATH superfamily
4DV5C 4JI7C 4YHHC 4JI4C 1J5EC 5IWAC 4JI2C 1HNXC 1XMOC 4LF5C 1IBLC 3J80D 4X66C 1IBMC 4DR3C 2UXCC 2UXBC 1N32C 4LF8C 2F4VC 4JYAC 2VQFC 4DV2C 1XNRC 4LF7C 4B3TC 4NXMC 4NXNC 4DR4C 4GKKC 4DUYC 4LF6C 2HHHC 4LFBC 2ZTBA 3T1YC 4YY3C 1N33C 1HNZC 3J81D 2UUBC 4X65C 1HNWC 4AQYC 4JI1C 4JI6C 4BSZA 2E5LC 4DV1C 4DR5C 1YGTA 2PG1E 4B3SC 4X62C 4K0KC 1FJGC 1N36C 1XDXA 4KHPC 4JI0C 2UXDC 5IT9D 4JI3C 5BR8C 4DV3C 4DV0C 5LMNC 1I94C 4X64C 4LFAC 4DUZC 4OX9C 4JV5C 4B3MC 4DR1C 4LF9C 2UUCC 1XNQC 4JI5C 5A2QD 4DR6C 2UU9C 2UUAC 5LMUC 3FM7A 4GKJC 4DR2C 3T1HC 1HR0C 4LF4C 4DV4C 4JI8C 1N34C 4B3RC 4LFCC 4DV6C 4DR7C 2ZM6C 1XMQC 3J7AD 5FLXD 2VQEC 3OTOC 4DV7C 3JAMD 1IBKC
chains in the Genus database with same CATH topology
3FM7A 1XDXA 1YGTA 2PG1E 2ZTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PG1 E;  3FM7 A;  1XDX A;  1YGT A; 
#chains in the Genus database with same CATH topology
 4DV5 C;  4JI7 C;  4YHH C;  4JI4 C;  1J5E C;  5IWA C;  4JI2 C;  1HNX C;  1XMO C;  4LF5 C;  1IBL C;  3J80 D;  4X66 C;  1IBM C;  4DR3 C;  2UXC C;  2UXB C;  1N32 C;  4LF8 C;  2F4V C;  4JYA C;  2VQF C;  4DV2 C;  1XNR C;  4LF7 C;  4B3T C;  4NXM C;  4NXN C;  4DR4 C;  4GKK C;  4DUY C;  4LF6 C;  2HHH C;  4LFB C;  2ZTB A;  3T1Y C;  4YY3 C;  1N33 C;  1HNZ C;  3J81 D;  2UUB C;  4X65 C;  1HNW C;  4AQY C;  4JI1 C;  4JI6 C;  4BSZ A;  2E5L C;  4DV1 C;  4DR5 C;  1YGT A;  2PG1 E;  4B3S C;  4X62 C;  4K0K C;  1FJG C;  1N36 C;  1XDX A;  4KHP C;  4JI0 C;  2UXD C;  5IT9 D;  4JI3 C;  5BR8 C;  4DV3 C;  4DV0 C;  5LMN C;  1I94 C;  4X64 C;  4LFA C;  4DUZ C;  4OX9 C;  4JV5 C;  4B3M C;  4DR1 C;  4LF9 C;  2UUC C;  1XNQ C;  4JI5 C;  5A2Q D;  4DR6 C;  2UU9 C;  2UUA C;  5LMU C;  3FM7 A;  4GKJ C;  4DR2 C;  3T1H C;  1HR0 C;  4LF4 C;  4DV4 C;  4JI8 C;  1N34 C;  4B3R C;  4LFC C;  4DV6 C;  4DR7 C;  2ZM6 C;  1XMQ C;  3J7A D;  5FLX D;  2VQE C;  3OTO C;  4DV7 C;  3JAM D;  1IBK C; 
#chains in the Genus database with same CATH homology
 3FM7 A;  1XDX A;  1YGT A;  2PG1 E;  2ZTB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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