1YGT | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	104
structure length	104
Chain Sequence	SQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 104 atoms

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104 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Drosophila melanogaster
publication title	Crystal structure of dynein light chain TcTex-1. pubmed doi rcsb
molecule keywords	Cytoplasmic dynein light chain
total genus	25
structure length	104
sequence length	104
ec nomenclature
pdb deposition date	2005-01-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03645	Tctex-1	Tctex-1 family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1140.40	Alpha Beta	2-Layer Sandwich	Ribosomal protein S3 C-terminal domain	Ribosomal protein S3 C-terminal domain	1ygtA01

1YGTA 2PG1E 1XDXA 3FM7A
chains in the Genus database with same CATH superfamily

5IT9D 4LF8C 1HNZC 4JI2C 4X64C 4JI6C 4BSZA 4DV6C 4B3TC 5LMNC 4X66C 1HNWC 1N33C 3T1YC 1N32C 4YHHC 4JI4C 4B3SC 1N34C 4DR1C 4DV1C 4DV7C 4DV4C 4DR4C 4JI0C 4JI1C 4DV0C 5A2QD 1HR0C 4LFCC 5IWAC 4LFAC 4KHPC 2UXCC 4B3RC 4LF9C 4DV5C 3J7AD 4DV2C 2VQEC 2VQFC 1J5EC 4AQYC 4LF6C 3OTOC 1XDXA 2ZM6C 4LFBC 4DR3C 2HHHC 4DUYC 1IBKC 2UUBC 4LF4C 4JI3C 4JI7C 4DUZC 4JV5C 4JI8C 2PG1E 1I94C 1XMQC 1IBMC 4K0KC 1HNXC 5FLXD 4DR6C 2UXBC 2ZTBA 2UXDC 4DR5C 3FM7A 4DV3C 1IBLC 2UUAC 4NXMC 3J80D 3J81D 4LF7C 5LMUC 4JI5C 4X62C 4YY3C 1XNRC 3T1HC 4JYAC 4B3MC 1N36C 4DR2C 4GKKC 1XNQC 2F4VC 3JAMD 4GKJC 4X65C 4DR7C 4OX9C 1FJGC 4NXNC 2UU9C 2UUCC 1XMOC 1YGTA 5BR8C 4LF5C 2E5LC
chains in the Genus database with same CATH topology

2ZTBA 1XDXA 3FM7A 1YGTA 2PG1E
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1YGT A;  2PG1 E;  1XDX A;  3FM7 A; 
#chains in the Genus database with same CATH topology
 5IT9 D;  4LF8 C;  1HNZ C;  4JI2 C;  4X64 C;  4JI6 C;  4BSZ A;  4DV6 C;  4B3T C;  5LMN C;  4X66 C;  1HNW C;  1N33 C;  3T1Y C;  1N32 C;  4YHH C;  4JI4 C;  4B3S C;  1N34 C;  4DR1 C;  4DV1 C;  4DV7 C;  4DV4 C;  4DR4 C;  4JI0 C;  4JI1 C;  4DV0 C;  5A2Q D;  1HR0 C;  4LFC C;  5IWA C;  4LFA C;  4KHP C;  2UXC C;  4B3R C;  4LF9 C;  4DV5 C;  3J7A D;  4DV2 C;  2VQE C;  2VQF C;  1J5E C;  4AQY C;  4LF6 C;  3OTO C;  1XDX A;  2ZM6 C;  4LFB C;  4DR3 C;  2HHH C;  4DUY C;  1IBK C;  2UUB C;  4LF4 C;  4JI3 C;  4JI7 C;  4DUZ C;  4JV5 C;  4JI8 C;  2PG1 E;  1I94 C;  1XMQ C;  1IBM C;  4K0K C;  1HNX C;  5FLX D;  4DR6 C;  2UXB C;  2ZTB A;  2UXD C;  4DR5 C;  3FM7 A;  4DV3 C;  1IBL C;  2UUA C;  4NXM C;  3J80 D;  3J81 D;  4LF7 C;  5LMU C;  4JI5 C;  4X62 C;  4YY3 C;  1XNR C;  3T1H C;  4JYA C;  4B3M C;  1N36 C;  4DR2 C;  4GKK C;  1XNQ C;  2F4V C;  3JAM D;  4GKJ C;  4X65 C;  4DR7 C;  4OX9 C;  1FJG C;  4NXN C;  2UU9 C;  2UUC C;  1XMO C;  1YGT A;  5BR8 C;  4LF5 C;  2E5L C; 
#chains in the Genus database with same CATH homology
 2ZTB A;  1XDX A;  3FM7 A;  1YGT A;  2PG1 E;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1YGTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations