1YGTA

Dynein light chain tctex-1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
104
structure length
104
Chain Sequence
SQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of dynein light chain TcTex-1.
pubmed doi rcsb
molecule tags Protein transport
source organism Drosophila melanogaster
molecule keywords Cytoplasmic dynein light chain
total genus 25
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2005-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03645 Tctex-1 Tctex-1 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1140.40 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain Ribosomal protein S3 C-terminal domain 1ygtA01
2PG1E 1YGTA 3FM7A 1XDXA
chains in the Genus database with same CATH superfamily
4DR6C 1HNXC 2UU9C 4DV4C 4DV5C 3J7AD 4DV7C 4GKKC 1IBMC 4LF8C 2UUBC 1N34C 4JI1C 4JI4C 4DV2C 4KHPC 4LFCC 2VQEC 4DV1C 4LFBC 1XMOC 4LF6C 4JI8C 4X64C 4JI0C 1XDXA 1I94C 4B3SC 2UUAC 4NXNC 5BR8C 4DUYC 4X66C 2UXCC 4X62C 4DR7C 4GKJC 1N33C 5A2QD 4YY3C 4X65C 3J80D 4DR2C 1XMQC 4DR1C 1HR0C 3OTOC 2UXDC 2ZM6C 2UUCC 4JI7C 2E5LC 4DUZC 4JI2C 1YGTA 2HHHC 4LFAC 4K0KC 3J81D 5LMNC 1XNRC 4OX9C 4LF5C 4LF9C 4JI3C 4JI5C 2VQFC 4JI6C 1IBKC 4DV0C 4JYAC 4LF7C 3FM7A 4B3RC 2ZTBA 4AQYC 2PG1E 4BSZA 4DR4C 4LF4C 1N36C 4B3TC 1IBLC 4JV5C 1HNWC 4B3MC 1XNQC 3T1HC 2F4VC 1HNZC 1N32C 3T1YC 5IWAC 1J5EC 4DV6C 4DR3C 3JAMD 1FJGC 5LMUC 5FLXD 2UXBC 4DV3C 4NXMC 4YHHC 4DR5C 5IT9D
chains in the Genus database with same CATH topology
1YGTA 2PG1E 3FM7A 1XDXA 2ZTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PG1 E;  1YGT A;  3FM7 A;  1XDX A; 
#chains in the Genus database with same CATH topology
 4DR6 C;  1HNX C;  2UU9 C;  4DV4 C;  4DV5 C;  3J7A D;  4DV7 C;  4GKK C;  1IBM C;  4LF8 C;  2UUB C;  1N34 C;  4JI1 C;  4JI4 C;  4DV2 C;  4KHP C;  4LFC C;  2VQE C;  4DV1 C;  4LFB C;  1XMO C;  4LF6 C;  4JI8 C;  4X64 C;  4JI0 C;  1XDX A;  1I94 C;  4B3S C;  2UUA C;  4NXN C;  5BR8 C;  4DUY C;  4X66 C;  2UXC C;  4X62 C;  4DR7 C;  4GKJ C;  1N33 C;  5A2Q D;  4YY3 C;  4X65 C;  3J80 D;  4DR2 C;  1XMQ C;  4DR1 C;  1HR0 C;  3OTO C;  2UXD C;  2ZM6 C;  2UUC C;  4JI7 C;  2E5L C;  4DUZ C;  4JI2 C;  1YGT A;  2HHH C;  4LFA C;  4K0K C;  3J81 D;  5LMN C;  1XNR C;  4OX9 C;  4LF5 C;  4LF9 C;  4JI3 C;  4JI5 C;  2VQF C;  4JI6 C;  1IBK C;  4DV0 C;  4JYA C;  4LF7 C;  3FM7 A;  4B3R C;  2ZTB A;  4AQY C;  2PG1 E;  4BSZ A;  4DR4 C;  4LF4 C;  1N36 C;  4B3T C;  1IBL C;  4JV5 C;  1HNW C;  4B3M C;  1XNQ C;  3T1H C;  2F4V C;  1HNZ C;  1N32 C;  3T1Y C;  5IWA C;  1J5E C;  4DV6 C;  4DR3 C;  3JAM D;  1FJG C;  5LMU C;  5FLX D;  2UXB C;  4DV3 C;  4NXM C;  4YHH C;  4DR5 C;  5IT9 D; 
#chains in the Genus database with same CATH homology
 1YGT A;  2PG1 E;  3FM7 A;  1XDX A;  2ZTB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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