1YGTA

Dynein light chain tctex-1
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
104
structure length
104
Chain Sequence
SQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of dynein light chain TcTex-1.
pubmed doi rcsb
molecule tags Protein transport
source organism Drosophila melanogaster
molecule keywords Cytoplasmic dynein light chain
total genus 25
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2005-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03645 Tctex-1 Tctex-1 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1140.40 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain Ribosomal protein S3 C-terminal domain 1ygtA01
1YGTA 1XDXA 2PG1E 3FM7A
chains in the Genus database with same CATH superfamily
4B3TC 2UUAC 1N33C 4NXMC 4DR3C 4AQYC 2ZTBA 3T1YC 1XDXA 4LF5C 5LMUC 1HNZC 4DR7C 4DV3C 4LF7C 1J5EC 3OTOC 1IBKC 4X66C 4B3RC 2VQEC 4LFCC 5A2QD 5LMNC 4B3SC 2UXDC 1HNXC 4DV2C 2PG1E 3J81D 2F4VC 2VQFC 4JI7C 1N36C 4NXNC 3J80D 1XMOC 4DV7C 3JAMD 1XMQC 1HR0C 4JI8C 1IBMC 4B3MC 4YY3C 2UU9C 4LFBC 3T1HC 4JV5C 4JI6C 1FJGC 4KHPC 4LF8C 4JI1C 4LF9C 2E5LC 4LF6C 1HNWC 2HHHC 3J7AD 4DR4C 4JI5C 4DR6C 4K0KC 1XNQC 4X65C 4DR5C 5IT9D 1I94C 4LFAC 4JI3C 2UXBC 4DR2C 4OX9C 1N34C 4BSZA 2UUBC 2UUCC 1IBLC 2ZM6C 4DV4C 2UXCC 4DV6C 1YGTA 4JI4C 3FM7A 4JYAC 5FLXD 1N32C 4DR1C 4DUZC 4JI0C 4DV5C 4LF4C 4GKKC 4DUYC 5BR8C 4X62C 4DV0C 4JI2C 4GKJC 4DV1C 4X64C 5IWAC 1XNRC 4YHHC
chains in the Genus database with same CATH topology
1XDXA 1YGTA 2PG1E 2ZTBA 3FM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YGT A;  1XDX A;  2PG1 E;  3FM7 A; 
#chains in the Genus database with same CATH topology
 4B3T C;  2UUA C;  1N33 C;  4NXM C;  4DR3 C;  4AQY C;  2ZTB A;  3T1Y C;  1XDX A;  4LF5 C;  5LMU C;  1HNZ C;  4DR7 C;  4DV3 C;  4LF7 C;  1J5E C;  3OTO C;  1IBK C;  4X66 C;  4B3R C;  2VQE C;  4LFC C;  5A2Q D;  5LMN C;  4B3S C;  2UXD C;  1HNX C;  4DV2 C;  2PG1 E;  3J81 D;  2F4V C;  2VQF C;  4JI7 C;  1N36 C;  4NXN C;  3J80 D;  1XMO C;  4DV7 C;  3JAM D;  1XMQ C;  1HR0 C;  4JI8 C;  1IBM C;  4B3M C;  4YY3 C;  2UU9 C;  4LFB C;  3T1H C;  4JV5 C;  4JI6 C;  1FJG C;  4KHP C;  4LF8 C;  4JI1 C;  4LF9 C;  2E5L C;  4LF6 C;  1HNW C;  2HHH C;  3J7A D;  4DR4 C;  4JI5 C;  4DR6 C;  4K0K C;  1XNQ C;  4X65 C;  4DR5 C;  5IT9 D;  1I94 C;  4LFA C;  4JI3 C;  2UXB C;  4DR2 C;  4OX9 C;  1N34 C;  4BSZ A;  2UUB C;  2UUC C;  1IBL C;  2ZM6 C;  4DV4 C;  2UXC C;  4DV6 C;  1YGT A;  4JI4 C;  3FM7 A;  4JYA C;  5FLX D;  1N32 C;  4DR1 C;  4DUZ C;  4JI0 C;  4DV5 C;  4LF4 C;  4GKK C;  4DUY C;  5BR8 C;  4X62 C;  4DV0 C;  4JI2 C;  4GKJ C;  4DV1 C;  4X64 C;  5IWA C;  1XNR C;  4YHH C; 
#chains in the Genus database with same CATH homology
 1XDX A;  1YGT A;  2PG1 E;  2ZTB A;  3FM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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