2PG1E

Structural analysis of a cytoplasmic dynein light chain-intermediate chain complex
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
104
structure length
104
Chain Sequence
SQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Dynein light chain 1, cytoplasmic
publication title Structural and thermodynamic characterization of a cytoplasmic dynein light chain-intermediate chain complex
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 27
structure length 104
sequence length 104
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2007-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF03645 Tctex-1 Tctex-1 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1140.40 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain Ribosomal protein S3 C-terminal domain 2pg1E01
1XDXA 2PG1E 1YGTA 3FM7A
chains in the Genus database with same CATH superfamily
5IWAC 4DUZC 4LF7C 4OX9C 4JI8C 1IBMC 4LF8C 1XMQC 4B3TC 4YY3C 4DR1C 4GKKC 1XDXA 4DR2C 4JI0C 2UUBC 4DV7C 2VQFC 4BSZA 4B3RC 4JI1C 5A2QD 2ZTBA 4JI2C 4GKJC 4KHPC 3FM7A 4LFCC 1XNQC 4DV2C 5LMUC 1IBLC 4DV5C 1IBKC 2F4VC 4YHHC 1I94C 3J81D 5FLXD 4DUYC 2E5LC 2ZM6C 4DV3C 4DR4C 4B3SC 3T1YC 4DR7C 1N32C 4AQYC 3JAMD 2UU9C 1XMOC 4B3MC 2UUAC 4X65C 2UXDC 4DV1C 2PG1E 1FJGC 4DV4C 4X64C 5IT9D 4LF5C 4JI7C 1J5EC 4LF4C 2UXBC 1N36C 2UUCC 4JI6C 4LF9C 2UXCC 4DV0C 2VQEC 1HNXC 5LMNC 4LFBC 4JI5C 4DR5C 3J7AD 4X62C 1N33C 4JI3C 1HNZC 4JI4C 4X66C 1XNRC 4DR6C 5BR8C 3T1HC 4JV5C 4NXNC 4DV6C 1HNWC 4K0KC 4JYAC 1HR0C 3OTOC 1YGTA 1N34C 2HHHC 4LF6C 4LFAC 4DR3C 3J80D 4NXMC
chains in the Genus database with same CATH topology
2PG1E 1YGTA 3FM7A 2ZTBA 1XDXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XDX A;  2PG1 E;  1YGT A;  3FM7 A; 
#chains in the Genus database with same CATH topology
 5IWA C;  4DUZ C;  4LF7 C;  4OX9 C;  4JI8 C;  1IBM C;  4LF8 C;  1XMQ C;  4B3T C;  4YY3 C;  4DR1 C;  4GKK C;  1XDX A;  4DR2 C;  4JI0 C;  2UUB C;  4DV7 C;  2VQF C;  4BSZ A;  4B3R C;  4JI1 C;  5A2Q D;  2ZTB A;  4JI2 C;  4GKJ C;  4KHP C;  3FM7 A;  4LFC C;  1XNQ C;  4DV2 C;  5LMU C;  1IBL C;  4DV5 C;  1IBK C;  2F4V C;  4YHH C;  1I94 C;  3J81 D;  5FLX D;  4DUY C;  2E5L C;  2ZM6 C;  4DV3 C;  4DR4 C;  4B3S C;  3T1Y C;  4DR7 C;  1N32 C;  4AQY C;  3JAM D;  2UU9 C;  1XMO C;  4B3M C;  2UUA C;  4X65 C;  2UXD C;  4DV1 C;  2PG1 E;  1FJG C;  4DV4 C;  4X64 C;  5IT9 D;  4LF5 C;  4JI7 C;  1J5E C;  4LF4 C;  2UXB C;  1N36 C;  2UUC C;  4JI6 C;  4LF9 C;  2UXC C;  4DV0 C;  2VQE C;  1HNX C;  5LMN C;  4LFB C;  4JI5 C;  4DR5 C;  3J7A D;  4X62 C;  1N33 C;  4JI3 C;  1HNZ C;  4JI4 C;  4X66 C;  1XNR C;  4DR6 C;  5BR8 C;  3T1H C;  4JV5 C;  4NXN C;  4DV6 C;  1HNW C;  4K0K C;  4JYA C;  1HR0 C;  3OTO C;  1YGT A;  1N34 C;  2HHH C;  4LF6 C;  4LFA C;  4DR3 C;  3J80 D;  4NXM C; 
#chains in the Genus database with same CATH homology
 2PG1 E;  1YGT A;  3FM7 A;  2ZTB A;  1XDX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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