1YUE | Genus

Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	421
structure length	390
Chain Sequence	AKINELLRESTTTNSNSIGRPNLVALTRATTKLIYSDIVATQRTNQPVAAFYGIKYLNPDNEQITELTEESKLTLNKGDLFKYNNIVYKVLEDTPFATIEESDLELALQIAIVLLKVRLFSDEIADARFQINKWQTAVKSRKLKTGITVELAQDLEANGFDAPNFLEDLLATEMADEINKDILQSLITVSKRYKVTGITDSGFIDLSYASAPEAGRSLYRMVCEMVSHIQKESTYTATFCVASARAAAILAASGWLKHKPEDDKYLSQNAYGFLANGLPLYCDTNSPLDYVIVGVVENIGEKEIVGSIFYAPYTEGLDLDDPEHVGAFKVVVDPESLQPSIGLLVRYALSANPYTVAKDEKEARIIDGGDMDKMAGRSDLSVLLGVKLPK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 390 atoms

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390 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Enterobacteria phage t4
publication title	Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry. pubmed doi rcsb
molecule keywords	Head vertex protein Gp24
total genus	83
structure length	390
sequence length	421
ec nomenclature
pdb deposition date	2005-02-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07068	Gp23	Major capsid protein Gp23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.10.40	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)	Seminal Fluid Protein PDC-109 (Domain B)	1yueA02
3.30.2320.40	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 fold	1yueA03

1YUEA
chains in the Genus database with same CATH superfamily

4HMEA 5AUNA 1QU3A 4Z2HA 4NYYA 2Y2OA 1E15A 1QO6A 1OHGA 3L2AA 5AUPA 1W1TA 4NYUA 2FSYA 1ED7A 4IBFA 2FT1A 2Y2NA 4IBGA 4NZ1A 1E88A 4NZ5A 1E6PA 1AIWA 1OGBA 1YU0A 2Y2LA 4EFAE 1YU4A 4Z2LA 3M7PA 2E0ZA 3N3FA 1H0IA 2PK8A 3FKEA 3WD3A 4HMCA 1J7MA 1YU1A 1UR9A 4QNLA 2Y2IA 4Z2KA 3A43A 1KS0A 1YUEA 4IBBA 4OJLA 4MB3A 4NY2A 2Y2KA 1GPFA 3DKTA 2FN2A 1E6NA 1EAKA 1PDCA 4Z2GA 4LG2A 3HSHA 4DL0E 1L6JA 1CXWA 2IOUA 3L28A 4HMDA 4IBEA 4OUIA 1H8PA 1GOIA 1E6ZA 2KDXA 4NZ4A 2Y2HA 4IJFA 3HONA 5AUOA 2Y2PA 4GH9A 1CK7A 4IJEA 3WD2A 3K5BA 3WD4A 2XD5A 4IBKA 4GHLA 3WD0A 3MQLA 3WX7A 2JCHA 2Y2MA 4OJPA 4TX8A 4Z2JA 1E8BA 2DM9A 1W1YA 2JE5A 1WZ2A 3L27A 3E8KA 2XD1A 1YU2A 2D49A 2RTSA 5BPVA 2UWXA 1W1VA 4OJ6A 2Y2GA 4IBCA 2Y2JA 2LC0A 4IBJA 4OJOA 2Y2QA 3L25A 4IBDA 1GXDA 1H0GA 4Z2IA 1W1PA 2BG1A 3WD1A 2V5OA 1UR8A 3KS4A 1OGGA 4MB5A 4MB4A 3L26A 3V6IA 3KS8A 4NZ3A 2DMAA 3A44A 4DT0A 1E6RA 1YU3A 3L29A 4GHAA 4OJ5A 2FFFB 4IBIA 1O6IA
chains in the Genus database with same CATH topology

5AUNA 4NYYA 2Y2OA 3L2AA 4NYUA 4IBFA 2Y2NA 4IBGA 4NZ1A 4NZ5A 1YU0A 2Y2LA 2FFFB 4EFAE 1YU4A 3N3FA 3FKEA 1YU1A 4QNLA 2Y2IA 3A43A 1YUEA 4IBBA 4OJLA 4NY2A 2Y2KA 4LG2A 3HSHA 4DL0E 2IOUA 3L28A 4IBEA 4OUIA 2KDXA 4NZ4A 2Y2HA 4IJFA 3HONA 5AUOA 2Y2PA 4GH9A 4IJEA 3K5BA 2XD5A 4IBKA 4GHLA 3WX7A 2JCHA 2Y2MA 4OJPA 2DM9A 2JE5A 3L27A 2XD1A 1YU2A 5BPVA 2UWXA 4OJ6A 2Y2GA 4IBCA 2Y2JA 2LC0A 4IBJA 4OJOA 2Y2QA 3L25A 4IBDA 2BG1A 3KS4A 3L26A 3V6IA 3KS8A 4NZ3A 2DMAA 3A44A 4DT0A 1YU3A 3L29A 4GHAA 4OJ5A 5AUPA 4IBIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1YUE A; 
#chains in the Genus database with same CATH topology
 4HME A;  5AUN A;  1QU3 A;  4Z2H A;  4NYY A;  2Y2O A;  1E15 A;  1QO6 A;  1OHG A;  3L2A A;  5AUP A;  1W1T A;  4NYU A;  2FSY A;  1ED7 A;  4IBF A;  2FT1 A;  2Y2N A;  4IBG A;  4NZ1 A;  1E88 A;  4NZ5 A;  1E6P A;  1AIW A;  1OGB A;  1YU0 A;  2Y2L A;  4EFA E;  1YU4 A;  4Z2L A;  3M7P A;  2E0Z A;  3N3F A;  1H0I A;  2PK8 A;  3FKE A;  3WD3 A;  4HMC A;  1J7M A;  1YU1 A;  1UR9 A;  4QNL A;  2Y2I A;  4Z2K A;  3A43 A;  1KS0 A;  1YUE A;  4IBB A;  4OJL A;  4MB3 A;  4NY2 A;  2Y2K A;  1GPF A;  3DKT A;  2FN2 A;  1E6N A;  1EAK A;  1PDC A;  4Z2G A;  4LG2 A;  3HSH A;  4DL0 E;  1L6J A;  1CXW A;  2IOU A;  3L28 A;  4HMD A;  4IBE A;  4OUI A;  1H8P A;  1GOI A;  1E6Z A;  2KDX A;  4NZ4 A;  2Y2H A;  4IJF A;  3HON A;  5AUO A;  2Y2P A;  4GH9 A;  1CK7 A;  4IJE A;  3WD2 A;  3K5B A;  3WD4 A;  2XD5 A;  4IBK A;  4GHL A;  3WD0 A;  3MQL A;  3WX7 A;  2JCH A;  2Y2M A;  4OJP A;  4TX8 A;  4Z2J A;  1E8B A;  2DM9 A;  1W1Y A;  2JE5 A;  1WZ2 A;  3L27 A;  3E8K A;  2XD1 A;  1YU2 A;  2D49 A;  2RTS A;  5BPV A;  2UWX A;  1W1V A;  4OJ6 A;  2Y2G A;  4IBC A;  2Y2J A;  2LC0 A;  4IBJ A;  4OJO A;  2Y2Q A;  3L25 A;  4IBD A;  1GXD A;  1H0G A;  4Z2I A;  1W1P A;  2BG1 A;  3WD1 A;  2V5O A;  1UR8 A;  3KS4 A;  1OGG A;  4MB5 A;  4MB4 A;  3L26 A;  3V6I A;  3KS8 A;  4NZ3 A;  2DMA A;  3A44 A;  4DT0 A;  1E6R A;  1YU3 A;  3L29 A;  4GHA A;  4OJ5 A;  2FFF B;  4IBI A;  1O6I A; 
#chains in the Genus database with same CATH homology
 5AUN A;  4NYY A;  2Y2O A;  3L2A A;  4NYU A;  4IBF A;  2Y2N A;  4IBG A;  4NZ1 A;  4NZ5 A;  1YU0 A;  2Y2L A;  2FFF B;  4EFA E;  1YU4 A;  3N3F A;  3FKE A;  1YU1 A;  4QNL A;  2Y2I A;  3A43 A;  1YUE A;  4IBB A;  4OJL A;  4NY2 A;  2Y2K A;  4LG2 A;  3HSH A;  4DL0 E;  2IOU A;  3L28 A;  4IBE A;  4OUI A;  2KDX A;  4NZ4 A;  2Y2H A;  4IJF A;  3HON A;  5AUO A;  2Y2P A;  4GH9 A;  4IJE A;  3K5B A;  2XD5 A;  4IBK A;  4GHL A;  3WX7 A;  2JCH A;  2Y2M A;  4OJP A;  2DM9 A;  2JE5 A;  3L27 A;  2XD1 A;  1YU2 A;  5BPV A;  2UWX A;  4OJ6 A;  2Y2G A;  4IBC A;  2Y2J A;  2LC0 A;  4IBJ A;  4OJO A;  2Y2Q A;  3L25 A;  4IBD A;  2BG1 A;  3KS4 A;  3L26 A;  3V6I A;  3KS8 A;  4NZ3 A;  2DMA A;  3A44 A;  4DT0 A;  1YU3 A;  3L29 A;  4GHA A;  4OJ5 A;  5AUP A;  4IBI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1YUEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations