The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
83
|
sequence length |
421
|
structure length |
390
|
Chain Sequence |
AKINELLRESTTTNSNSIGRPNLVALTRATTKLIYSDIVATQRTNQPVAAFYGIKYLNPDNEQITELTEESKLTLNKGDLFKYNNIVYKVLEDTPFATIEESDLELALQIAIVLLKVRLFSDEIADARFQINKWQTAVKSRKLKTGITVELAQDLEANGFDAPNFLEDLLATEMADEINKDILQSLITVSKRYKVTGITDSGFIDLSYASAPEAGRSLYRMVCEMVSHIQKESTYTATFCVASARAAAILAASGWLKHKPEDDKYLSQNAYGFLANGLPLYCDTNSPLDYVIVGVVENIGEKEIVGSIFYAPYTEGLDLDDPEHVGAFKVVVDPESLQPSIGLLVRYALSANPYTVAKDEKEARIIDGGDMDKMAGRSDLSVLLGVKLPK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein
|
| source organism |
Enterobacteria phage t4
|
| publication title |
Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.
pubmed doi rcsb |
| molecule keywords |
Head vertex protein Gp24
|
| total genus |
83
|
| structure length |
390
|
| sequence length |
421
|
| ec nomenclature | |
| pdb deposition date | 2005-02-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07068 | Gp23 | Major capsid protein Gp23 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Seminal Fluid Protein PDC-109 (Domain B) | Seminal Fluid Protein PDC-109 (Domain B) | ||
| Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | hypothetical protein PF0899 fold |
#chains in the Genus database with same CATH superfamily 1YUE A; #chains in the Genus database with same CATH topology 1YU0 A; 1EAK A; 3WD3 A; 2LC0 A; 1H8P A; 3A43 A; 4TX8 A; 4OJP A; 4GHA A; 1E15 A; 4EFA E; 4NY2 A; 1W1V A; 4OJO A; 1E8B A; 4NYU A; 4Z2K A; 4IJE A; 1PDC A; 4Z2I A; 3E8K A; 5AUO A; 4IBC A; 4IBI A; 4Z2G A; 2Y2P A; 4GH9 A; 2FN2 A; 4NZ3 A; 1YU3 A; 4Z2H A; 1H0I A; 1OGG A; 3WX7 A; 3HSH A; 2JCH A; 3L2A A; 4MB3 A; 4GHL A; 3KS4 A; 3L29 A; 1W1T A; 4LG2 A; 1UR9 A; 2DM9 A; 3L28 A; 2PK8 A; 4OUI A; 2Y2Q A; 2KDX A; 1W1Y A; 1UR8 A; 4OJ5 A; 3L25 A; 1QU3 A; 2BG1 A; 1KS0 A; 2V5O A; 2XD1 A; 2Y2N A; 1ED7 A; 4MB4 A; 3WD4 A; 5BPV A; 4NZ1 A; 4QNL A; 4IBF A; 1E6R A; 1AIW A; 2Y2I A; 3N3F A; 3DKT A; 2FFF B; 4Z2J A; 2DMA A; 2Y2O A; 1J7M A; 1YUE A; 2D49 A; 1OGB A; 2Y2G A; 1YU1 A; 2FSY A; 1W1P A; 1GPF A; 4NZ5 A; 2FT1 A; 4NZ4 A; 4IBJ A; 1GOI A; 1CK7 A; 3HON A; 4OJ6 A; 3WD1 A; 1GXD A; 3KS8 A; 1OHG A; 3MQL A; 1O6I A; 1E88 A; 1E6Z A; 4IBG A; 4OJL A; 5AUP A; 4DT0 A; 1E6N A; 2UWX A; 1YU2 A; 4HMC A; 1E6P A; 4Z2L A; 1CXW A; 3WD0 A; 1H0G A; 3K5B A; 2XD5 A; 4DL0 E; 4IBB A; 4HME A; 3WD2 A; 2JE5 A; 3V6I A; 4HMD A; 4IBK A; 4IBE A; 3L26 A; 4IBD A; 2RTS A; 4NYY A; 2E0Z A; 2Y2M A; 1WZ2 A; 2Y2H A; 3M7P A; 4MB5 A; 3FKE A; 3L27 A; 3A44 A; 1YU4 A; 2Y2K A; 2Y2L A; 1L6J A; 4IJF A; 1QO6 A; 2IOU A; 5AUN A; 2Y2J A; #chains in the Genus database with same CATH homology 1YU0 A; 2LC0 A; 3A43 A; 4OJP A; 4GHA A; 4EFA E; 4NY2 A; 4OJO A; 4NYU A; 5AUO A; 4IJE A; 4IBC A; 4IBI A; 2Y2P A; 4GH9 A; 4NZ3 A; 1YU3 A; 3WX7 A; 3HSH A; 2JCH A; 3L2A A; 4GHL A; 3KS4 A; 3L29 A; 4LG2 A; 2DM9 A; 3L28 A; 4OUI A; 2Y2Q A; 2KDX A; 4OJ5 A; 3L25 A; 2BG1 A; 2XD1 A; 2Y2N A; 5BPV A; 4NZ1 A; 4QNL A; 4IBF A; 2Y2I A; 3N3F A; 2FFF B; 2DMA A; 2Y2O A; 1YUE A; 2Y2G A; 1YU1 A; 4NZ5 A; 4NZ4 A; 4IBJ A; 3HON A; 4OJ6 A; 3KS8 A; 4IBG A; 4OJL A; 5AUP A; 4DT0 A; 2UWX A; 1YU2 A; 3K5B A; 2XD5 A; 4DL0 E; 4IBB A; 2JE5 A; 3V6I A; 4IBK A; 4IBE A; 3L26 A; 4IBD A; 4NYY A; 2Y2M A; 2Y2H A; 3FKE A; 3L27 A; 3A44 A; 1YU4 A; 2Y2K A; 2Y2L A; 4IJF A; 2IOU A; 5AUN A; 2Y2J A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
