2PG1 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	104
structure length	104
Chain Sequence	SQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 104 atoms

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104 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Drosophila melanogaster
publication title	Structural and thermodynamic characterization of a cytoplasmic dynein light chain-intermediate chain complex pubmed doi rcsb
molecule keywords	Dynein light chain 1, cytoplasmic
total genus	27
structure length	104
sequence length	104
chains with identical sequence	F, G, H
ec nomenclature
pdb deposition date	2007-04-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
E	PF03645	Tctex-1	Tctex-1 family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1140.40	Alpha Beta	2-Layer Sandwich	Ribosomal protein S3 C-terminal domain	Ribosomal protein S3 C-terminal domain	2pg1E01

3FM7A 1YGTA 1XDXA 2PG1E
chains in the Genus database with same CATH superfamily

4DR6C 4K0KC 1I94C 4GKKC 2UXCC 4DV4C 3J7AD 4JV5C 1XMQC 2UU9C 4BSZA 2HHHC 4DV2C 1IBLC 3FM7A 1YGTA 3T1YC 4OX9C 1XNQC 1HNZC 2VQFC 4JI2C 5LMNC 3T1HC 4DV1C 3J80D 1N34C 4B3MC 5A2QD 4JI5C 4LF4C 4LFBC 3JAMD 4YHHC 4X64C 4DR1C 4LF6C 1IBMC 4B3SC 3OTOC 4DR4C 5FLXD 1XDXA 5IWAC 4LF7C 4DUZC 1J5EC 4DR2C 4X62C 4DV3C 4KHPC 2UUCC 4DV7C 1IBKC 4AQYC 4DV0C 4X66C 2ZM6C 2ZTBA 1N36C 4DR7C 4JI3C 2UXDC 4LFCC 4LF5C 2F4VC 4DR3C 4DV5C 1N33C 2PG1E 5LMUC 4JI6C 2UXBC 4NXNC 1N32C 4JI1C 4DUYC 4JI8C 2E5LC 1XMOC 4X65C 2UUBC 4GKJC 4JYAC 4JI4C 2VQEC 4B3RC 4DV6C 1FJGC 1HNXC 1HR0C 4DR5C 4LF8C 5IT9D 4B3TC 5BR8C 4JI0C 4NXMC 4JI7C 1HNWC 2UUAC 4YY3C 4LF9C 3J81D 1XNRC 4LFAC
chains in the Genus database with same CATH topology

3FM7A 1YGTA 2PG1E 1XDXA 2ZTBA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3FM7 A;  1YGT A;  1XDX A;  2PG1 E; 
#chains in the Genus database with same CATH topology
 4DR6 C;  4K0K C;  1I94 C;  4GKK C;  2UXC C;  4DV4 C;  3J7A D;  4JV5 C;  1XMQ C;  2UU9 C;  4BSZ A;  2HHH C;  4DV2 C;  1IBL C;  3FM7 A;  1YGT A;  3T1Y C;  4OX9 C;  1XNQ C;  1HNZ C;  2VQF C;  4JI2 C;  5LMN C;  3T1H C;  4DV1 C;  3J80 D;  1N34 C;  4B3M C;  5A2Q D;  4JI5 C;  4LF4 C;  4LFB C;  3JAM D;  4YHH C;  4X64 C;  4DR1 C;  4LF6 C;  1IBM C;  4B3S C;  3OTO C;  4DR4 C;  5FLX D;  1XDX A;  5IWA C;  4LF7 C;  4DUZ C;  1J5E C;  4DR2 C;  4X62 C;  4DV3 C;  4KHP C;  2UUC C;  4DV7 C;  1IBK C;  4AQY C;  4DV0 C;  4X66 C;  2ZM6 C;  2ZTB A;  1N36 C;  4DR7 C;  4JI3 C;  2UXD C;  4LFC C;  4LF5 C;  2F4V C;  4DR3 C;  4DV5 C;  1N33 C;  2PG1 E;  5LMU C;  4JI6 C;  2UXB C;  4NXN C;  1N32 C;  4JI1 C;  4DUY C;  4JI8 C;  2E5L C;  1XMO C;  4X65 C;  2UUB C;  4GKJ C;  4JYA C;  4JI4 C;  2VQE C;  4B3R C;  4DV6 C;  1FJG C;  1HNX C;  1HR0 C;  4DR5 C;  4LF8 C;  5IT9 D;  4B3T C;  5BR8 C;  4JI0 C;  4NXM C;  4JI7 C;  1HNW C;  2UUA C;  4YY3 C;  4LF9 C;  3J81 D;  1XNR C;  4LFA C; 
#chains in the Genus database with same CATH homology
 3FM7 A;  1YGT A;  2PG1 E;  1XDX A;  2ZTB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2PG1E

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations