2IOUA

Major tropism determinant p1 (mtd-p1) variant complexed with bordetella brochiseptica virulence factor pertactin extracellular domain (prn-e).
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
376
structure length
376
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGAWNGTSLSGSRAALWYSGPSFSFAFFGARGVCDHLIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/membrane protein
source organism Bordetella phage bpp-1
publication title Selective Ligand Recognition by a Diversity-Generating Retroelement Variable Protein
pubmed doi rcsb
molecule keywords Major Tropism Determinant P1
total genus 94
structure length 376
sequence length 376
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 2iouA01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 2iouA03
1Y1JX 1Y4JA 1Y1FX 1Y1EX 2AIJX 1YU2A 2Y3CA 2AFYX 1Y1GX 2Q17A 1YU0A 1YU1A 1Z70X 1YU3A 1Y1IX 2IOUA 2AIIX 2HIBX 2AIKX 1YU4A 2AFTX 2HI8X 1Y1HX
chains in the Genus database with same CATH superfamily
4NZ1A 3N3FA 2BG1A 2Y2OA 3M7PA 3KS4A 4QNLA 2Y3CA 4IBDA 4MB5A 3WD2A 4IBIA 3L26A 1GPFA 2Y2QA 4GH9A 3MQLA 1W1PA 4MB3A 2Y2MA 1Z70X 4IBJA 1L6JA 4IJFA 4GHLA 1GXDA 1ED7A 1O6IA 4OJ5A 1E6NA 4LG2A 3L29A 2HIBX 1J7MA 4TX8A 1W1TA 1E15A 2XD1A 1OGGA 4OUIA 1E6PA 4NYUA 1E88A 1Y1EX 1Y1FX 3L25A 2AIJX 2Y2GA 3KS8A 2FFFB 1H8PA 4Z2JA 1YU1A 3WD0A 1QO6A 4MB4A 3WD3A 1YU3A 4Z2IA 4IBBA 4HMDA 4NZ4A 1OGBA 3HSHA 4IBEA 1KS0A 3WD4A 2Y2NA 2JE5A 1H0IA 1H0GA 4IBGA 2AFTX 3HONA 1W1YA 4OJLA 3FKEA 1E6ZA 2RTSA 1Y1HX 1Y1JX 4IJEA 4HMCA 4Z2GA 4OJ6A 2Y2PA 1YU2A 1PDCA 2Y2HA 2AFYX 1Y1GX 3L2AA 4GHAA 2Q17A 1YU0A 2Y2IA 1Y1IX 1UR9A 4NYYA 4IBKA 4IBFA 4OJOA 3WX7A 1W1VA 1CK7A 2V5OA 2AIIX 1CXWA 1YU4A 2Y2JA 4IBCA 1E6RA 1Y4JA 4Z2LA 1EAKA 2Y2KA 1AIWA 1E8BA 2D49A 2XD5A 4OJPA 3WD1A 4NZ3A 2FN2A 4HMEA 5BPVA 4Z2KA 2UWXA 3L27A 3L28A 2IOUA 1UR8A 1GOIA 1YUEA 4NY2A 4NZ5A 2AIKX 4Z2HA 2HI8X 2Y2LA 2JCHA
chains in the Genus database with same CATH topology
4NZ1A 3N3FA 2BG1A 2Y2OA 3KS4A 4QNLA 2Y3CA 4IBDA 4IBIA 3L26A 2Y2QA 4GH9A 2Y2MA 1Z70X 4IBJA 4IJFA 4GHLA 4OJ5A 4LG2A 3L29A 2HIBX 2XD1A 4OUIA 4NYUA 1Y1FX 1Y1EX 3L25A 2AIJX 2Y2GA 3KS8A 2FFFB 1YU1A 1YU3A 4IBBA 4NZ4A 3HSHA 4IBEA 2Y2NA 2JE5A 4IBGA 2AFTX 3HONA 4OJLA 3FKEA 1Y1HX 1Y1JX 4IJEA 4OJ6A 2Y2PA 1YU2A 2Y2HA 2AFYX 1Y1GX 3L2AA 4GHAA 2Q17A 1YU0A 2Y2IA 1Y1IX 4NYYA 4IBKA 4IBFA 4OJOA 3WX7A 2AIIX 1YU4A 2Y2JA 4IBCA 1Y4JA 2Y2KA 2XD5A 4OJPA 4NZ3A 5BPVA 2UWXA 3L27A 3L28A 2IOUA 1YUEA 4NY2A 4NZ5A 2AIKX 2HI8X 2Y2LA 2JCHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1J X;  1Y4J A;  1Y1F X;  1Y1E X;  2AIJ X;  1YU2 A;  2Y3C A;  2AFY X;  1Y1G X;  2Q17 A;  1YU0 A;  1YU1 A;  1Z70 X;  1YU3 A;  1Y1I X;  2IOU A;  2AII X;  2HIB X;  2AIK X;  1YU4 A;  2AFT X;  2HI8 X;  1Y1H X; 
#chains in the Genus database with same CATH topology
 4NZ1 A;  3N3F A;  2BG1 A;  2Y2O A;  3M7P A;  3KS4 A;  4QNL A;  2Y3C A;  4IBD A;  4MB5 A;  3WD2 A;  4IBI A;  3L26 A;  1GPF A;  2Y2Q A;  4GH9 A;  3MQL A;  1W1P A;  4MB3 A;  2Y2M A;  1Z70 X;  4IBJ A;  1L6J A;  4IJF A;  4GHL A;  1GXD A;  1ED7 A;  1O6I A;  4OJ5 A;  1E6N A;  4LG2 A;  3L29 A;  2HIB X;  1J7M A;  4TX8 A;  1W1T A;  1E15 A;  2XD1 A;  1OGG A;  4OUI A;  1E6P A;  4NYU A;  1E88 A;  1Y1E X;  1Y1F X;  3L25 A;  2AIJ X;  2Y2G A;  3KS8 A;  2FFF B;  1H8P A;  4Z2J A;  1YU1 A;  3WD0 A;  1QO6 A;  4MB4 A;  3WD3 A;  1YU3 A;  4Z2I A;  4IBB A;  4HMD A;  4NZ4 A;  1OGB A;  3HSH A;  4IBE A;  1KS0 A;  3WD4 A;  2Y2N A;  2JE5 A;  1H0I A;  1H0G A;  4IBG A;  2AFT X;  3HON A;  1W1Y A;  4OJL A;  3FKE A;  1E6Z A;  2RTS A;  1Y1H X;  1Y1J X;  4IJE A;  4HMC A;  4Z2G A;  4OJ6 A;  2Y2P A;  1YU2 A;  1PDC A;  2Y2H A;  2AFY X;  1Y1G X;  3L2A A;  4GHA A;  2Q17 A;  1YU0 A;  2Y2I A;  1Y1I X;  1UR9 A;  4NYY A;  4IBK A;  4IBF A;  4OJO A;  3WX7 A;  1W1V A;  1CK7 A;  2V5O A;  2AII X;  1CXW A;  1YU4 A;  2Y2J A;  4IBC A;  1E6R A;  1Y4J A;  4Z2L A;  1EAK A;  2Y2K A;  1AIW A;  1E8B A;  2D49 A;  2XD5 A;  4OJP A;  3WD1 A;  4NZ3 A;  2FN2 A;  4HME A;  5BPV A;  4Z2K A;  2UWX A;  3L27 A;  3L28 A;  2IOU A;  1UR8 A;  1GOI A;  1YUE A;  4NY2 A;  4NZ5 A;  2AIK X;  4Z2H A;  2HI8 X;  2Y2L A;  2JCH A; 
#chains in the Genus database with same CATH homology
 4NZ1 A;  3N3F A;  2BG1 A;  2Y2O A;  3KS4 A;  4QNL A;  2Y3C A;  4IBD A;  4IBI A;  3L26 A;  2Y2Q A;  4GH9 A;  2Y2M A;  1Z70 X;  4IBJ A;  4IJF A;  4GHL A;  4OJ5 A;  4LG2 A;  3L29 A;  2HIB X;  2XD1 A;  4OUI A;  4NYU A;  1Y1F X;  1Y1E X;  3L25 A;  2AIJ X;  2Y2G A;  3KS8 A;  2FFF B;  1YU1 A;  1YU3 A;  4IBB A;  4NZ4 A;  3HSH A;  4IBE A;  2Y2N A;  2JE5 A;  4IBG A;  2AFT X;  3HON A;  4OJL A;  3FKE A;  1Y1H X;  1Y1J X;  4IJE A;  4OJ6 A;  2Y2P A;  1YU2 A;  2Y2H A;  2AFY X;  1Y1G X;  3L2A A;  4GHA A;  2Q17 A;  1YU0 A;  2Y2I A;  1Y1I X;  4NYY A;  4IBK A;  4IBF A;  4OJO A;  3WX7 A;  2AII X;  1YU4 A;  2Y2J A;  4IBC A;  1Y4J A;  2Y2K A;  2XD5 A;  4OJP A;  4NZ3 A;  5BPV A;  2UWX A;  3L27 A;  3L28 A;  2IOU A;  1YUE A;  4NY2 A;  4NZ5 A;  2AIK X;  2HI8 X;  2Y2L A;  2JCH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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