The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
94
|
sequence length |
376
|
structure length |
376
|
Chain Sequence |
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGAWNGTSLSGSRAALWYSGPSFSFAFFGARGVCDHLIL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Selective Ligand Recognition by a Diversity-Generating Retroelement Variable Protein
pubmed doi rcsb |
| molecule tags |
Viral protein/membrane protein
|
| source organism |
Bordetella phage bpp-1
|
| molecule keywords |
Major Tropism Determinant P1
|
| total genus |
94
|
| structure length |
376
|
| sequence length |
376
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2006-10-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF18454 | Mtd_N | Major tropism determinant N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Seminal Fluid Protein PDC-109 (Domain B) | Seminal Fluid Protein PDC-109 (Domain B) | ||
| Alpha Beta | Alpha-Beta Complex | paralog of FGE (formylglycine-generating enzyme) | paralog of FGE (formylglycine-generating enzyme) |
#chains in the Genus database with same CATH superfamily 2AII X; 1Z70 X; 1Y1G X; 1Y1F X; 1Y4J A; 2AFY X; 1YU1 A; 1Y1J X; 2Q17 A; 1Y1H X; 2Y3C A; 1YU3 A; 2HI8 X; 2AFT X; 1YU4 A; 2HIB X; 2IOU A; 1YU0 A; 2AIK X; 1Y1I X; 2AIJ X; 1YU2 A; 1Y1E X; #chains in the Genus database with same CATH topology 1UR9 A; 4IJF A; 1Y1G X; 4NYU A; 2Y2N A; 3L25 A; 4IBB A; 2FN2 A; 4IBE A; 4IBJ A; 2Y2P A; 2Q17 A; 3WD3 A; 4OUI A; 3FKE A; 1E8B A; 1OGG A; 1GPF A; 4IBC A; 4Z2L A; 4Z2G A; 2HI8 X; 1GXD A; 3L2A A; 2Y2M A; 1EAK A; 4TX8 A; 1OGB A; 4IBI A; 4NZ4 A; 2BG1 A; 2D49 A; 1Z70 X; 1Y1F X; 2JCH A; 3L28 A; 3KS8 A; 2Y2I A; 1H8P A; 4OJP A; 1E15 A; 4HME A; 4Z2J A; 1Y1J X; 3WX7 A; 4MB5 A; 3L27 A; 4IBG A; 1W1P A; 4OJ5 A; 4NZ1 A; 1QO6 A; 1Y1H X; 4GHL A; 2JE5 A; 4HMC A; 4NYY A; 2Y2O A; 2Y2G A; 3WD4 A; 1E6R A; 2V5O A; 4NZ3 A; 2Y2K A; 2AFT X; 4Z2I A; 4IBD A; 4Z2K A; 2AIK X; 2AIJ X; 3HON A; 4GH9 A; 1YUE A; 4LG2 A; 1GOI A; 1W1Y A; 1Y4J A; 4IBF A; 1H0G A; 1YU1 A; 1E88 A; 4Z2H A; 2UWX A; 2Y2H A; 4QNL A; 1CXW A; 4MB3 A; 2Y3C A; 1YU3 A; 4OJO A; 3M7P A; 1PDC A; 2FFF B; 2XD5 A; 2RTS A; 3KS4 A; 4MB4 A; 1UR8 A; 1YU4 A; 2HIB X; 3MQL A; 1CK7 A; 2Y2J A; 3WD0 A; 1YU2 A; 4IJE A; 1Y1E X; 1E6Z A; 1E6P A; 2AII X; 1O6I A; 2AFY X; 5BPV A; 3L29 A; 4NZ5 A; 3N3F A; 1ED7 A; 2Y2L A; 1W1V A; 4OJ6 A; 1E6N A; 4GHA A; 2XD1 A; 3L26 A; 3HSH A; 1KS0 A; 3WD2 A; 4IBK A; 1W1T A; 1L6J A; 1AIW A; 4OJL A; 3WD1 A; 2IOU A; 1YU0 A; 1H0I A; 4HMD A; 1J7M A; 1Y1I X; 2Y2Q A; 4NY2 A; #chains in the Genus database with same CATH homology 4IJF A; 1Y1G X; 4NYU A; 2Y2N A; 3L25 A; 4IBB A; 4IBE A; 4IBJ A; 2Y2P A; 2Q17 A; 4OUI A; 3FKE A; 4IBC A; 2HI8 X; 3L2A A; 2Y2M A; 4IBI A; 4NZ4 A; 2BG1 A; 1Z70 X; 1Y1F X; 2JCH A; 3L28 A; 3KS8 A; 2Y2I A; 4OJP A; 1Y1J X; 3WX7 A; 3L27 A; 4IBG A; 4OJ5 A; 4NZ1 A; 1Y1H X; 4GHL A; 2JE5 A; 4NYY A; 2Y2O A; 2Y2G A; 4NZ3 A; 2Y2K A; 2AFT X; 4IBD A; 2AIK X; 2AIJ X; 3HON A; 4GH9 A; 4LG2 A; 1YUE A; 1Y4J A; 4IBF A; 1YU1 A; 2UWX A; 2Y2H A; 4QNL A; 2Y3C A; 1YU3 A; 4OJO A; 2FFF B; 2XD5 A; 3KS4 A; 1YU4 A; 2HIB X; 2Y2J A; 1YU2 A; 4IJE A; 1Y1E X; 2AII X; 2AFY X; 5BPV A; 3L29 A; 4NZ5 A; 3N3F A; 2Y2L A; 4OJ6 A; 4GHA A; 2XD1 A; 3L26 A; 3HSH A; 4IBK A; 4OJL A; 2IOU A; 1YU0 A; 1Y1I X; 2Y2Q A; 4NY2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
