2V5OA

Structure of human igf2r domains 11-14
Total Genus 112

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
613
structure length
604
Chain Sequence
CQVTNPSTGHLFDLSSLSGRAGFTAAYSEKGLVYMSICGENENCPPGVGACFGQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACEQATECSVRNGSSIVDLSPLIHRTGGYEAYDESTNPDFYINICQPLNPMHAVPCPAGAAVCKVPIDGPPIDIGRVAGPPILNPIANEIYLNFESSTPCLADNYTSLIAFHCKRGVSMGTPKLLRTSECDFVFEWETPVVCPDEVRMDGCTLTDEQLLYSFNLSSLSTSTFKVTRDSRTYSVGVCTFAVGPEQGGCKDGGVCLLSGTKGASFGRLQSMKLDYRHQDEAVVLSYVNGDRCPPETDDGVPCVFPFIFNGKSYEECIIESRAKLWCSTTADYDRDHEWGFCRHSNSYRTSSIIFKCDEDEDIGRPQVFSEVRGCDVTFEWKTKVVCPPKKLECKFVQKHKTYDLRLLSSLTGSWSLVHNGVSYYINLCQKIYKGPLGCSERASICRRTTTGDVQVLGLVHTQKLGVIGDKVVVTYSKGYPCGGNKTASSVIELTCTKTVGRPAFKRFDIDSCTYYFSWDSRAACAVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Receptor
source organism Homo sapiens
publication title Structure and Functional Analysis of the Igf-II/Igf2R Interaction
pubmed doi rcsb
molecule keywords CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR
total genus 112
structure length 604
sequence length 613
ec nomenclature
pdb deposition date 2007-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00040 fn2 Fibronectin type II domain
A PF00878 CIMR Cation-independent mannose-6-phosphate receptor repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 2v5oA04
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 2v5oA01
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 2v5oA05
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 2v5oA03
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 2v5oA02
2L2AA 2RL7A 1E88A 1C39A 2V5NA 2V5OA 3M7PA 3K43A 1J7MA 1KEOA 2N1HA 3CY4A 2RL9A 1PDCA 1SZ0A 2L21A 1GXDA 2LLAA 3MQLA 1CXWA 2FN2A 2CNJD 2M6TA 3AIHA 1M6PA 1E6FA 1QO6A 2L2GA 3K42A 2RLBA 1SYOA 2KVAA 2M68A 1H8PA 5IEIA 1EAKA 1L6JA 1E8BA 1CK7A 2L29A 1KS0A 2RL8A 1GP3A 2LVXA 4XQMA 1GP0A 1Q25A 1GQBA 2KVBA 3K41A
chains in the Genus database with same CATH superfamily
3L28A 1E6NA 2IOUA 1E6PA 2L2AA 1OGBA 3FKEA 3KS4A 4MB5A 4IBKA 4Z2LA 2V5OA 4OJ6A 4OJLA 1O6IA 2FFFB 1W1VA 1J7MA 4OUIA 1KEOA 3CY4A 3L2AA 2LLAA 1GOIA 2BG1A 4IJEA 3MQLA 4NYYA 3WD2A 3KS8A 1CXWA 4HMCA 1QO6A 1E6FA 4Z2JA 4GHAA 4IBDA 2Y2NA 3HSHA 2XD5A 3K42A 1E6RA 4TX8A 4GHLA 2M68A 4IBCA 2L29A 2Y2QA 4IBBA 1H0GA 1GP3A 4NZ5A 1GP0A 2LVXA 3L27A 3WD4A 4Z2KA 1ED7A 1E88A 1C39A 3M7PA 3K43A 2UWXA 1E6ZA 2D49A 4HMDA 2XD1A 2M6TA 1M6PA 4NYUA 3WX7A 1GPFA 2RLBA 2JCHA 4Z2GA 4IBIA 4OJPA 1EAKA 4LG2A 2Y2LA 2RTSA 1OGGA 4MB4A 3WD3A 5BPVA 1GQBA 1YU2A 2KVBA 1YU4A 3K41A 2RL7A 4Z2IA 1PDCA 1SZ0A 2L21A 3HONA 1GXDA 2FN2A 2CNJD 3AIHA 1H0IA 1YU1A 3L29A 2Y2PA 1YU0A 4QNLA 3WD0A 4Z2HA 3N3FA 2JE5A 4HMEA 4NZ4A 1UR8A 1H8PA 2Y2KA 1L6JA 4GH9A 5IEIA 1E8BA 1CK7A 1KS0A 3L26A 1AIWA 1YU3A 1Q25A 4OJ5A 2Y2JA 4MB3A 2V5NA 4IBEA 4IBFA 1W1YA 2Y2IA 1W1TA 4IBJA 2N1HA 1W1PA 2RL9A 4OJOA 2Y2GA 1UR9A 2Y2HA 1YUEA 4NZ3A 3WD1A 1SYOA 2Y2MA 4IJFA 2KVAA 4NY2A 4NZ1A 2RL8A 2Y2OA 4XQMA 1E15A 3L25A 2L2GA 4IBGA
chains in the Genus database with same CATH topology
2L2AA 2RL7A 1E88A 1C39A 2V5NA 2V5OA 3M7PA 3K43A 1J7MA 1KEOA 2N1HA 3CY4A 2RL9A 1PDCA 1SZ0A 2L21A 1GXDA 2LLAA 3MQLA 1CXWA 2FN2A 2CNJD 2M6TA 3AIHA 1M6PA 1E6FA 1QO6A 2L2GA 3K42A 2RLBA 1SYOA 2KVAA 2M68A 1H8PA 5IEIA 1EAKA 1L6JA 1E8BA 1CK7A 2L29A 1KS0A 2RL8A 1GP3A 2LVXA 4XQMA 1GP0A 1Q25A 1GQBA 2KVBA 3K41A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L2A A;  2RL7 A;  1E88 A;  1C39 A;  2V5N A;  2V5O A;  3M7P A;  3K43 A;  1J7M A;  1KEO A;  2N1H A;  3CY4 A;  2RL9 A;  1PDC A;  1SZ0 A;  2L21 A;  1GXD A;  2LLA A;  3MQL A;  1CXW A;  2FN2 A;  2CNJ D;  2M6T A;  3AIH A;  1M6P A;  1E6F A;  1QO6 A;  2L2G A;  3K42 A;  2RLB A;  1SYO A;  2KVA A;  2M68 A;  1H8P A;  5IEI A;  1EAK A;  1L6J A;  1E8B A;  1CK7 A;  2L29 A;  1KS0 A;  2RL8 A;  1GP3 A;  2LVX A;  4XQM A;  1GP0 A;  1Q25 A;  1GQB A;  2KVB A;  3K41 A; 
#chains in the Genus database with same CATH topology
 3L28 A;  1E6N A;  2IOU A;  1E6P A;  2L2A A;  1OGB A;  3FKE A;  3KS4 A;  4MB5 A;  4IBK A;  4Z2L A;  2V5O A;  4OJ6 A;  4OJL A;  1O6I A;  2FFF B;  1W1V A;  1J7M A;  4OUI A;  1KEO A;  3CY4 A;  3L2A A;  2LLA A;  1GOI A;  2BG1 A;  4IJE A;  3MQL A;  4NYY A;  3WD2 A;  3KS8 A;  1CXW A;  4HMC A;  1QO6 A;  1E6F A;  4Z2J A;  4GHA A;  4IBD A;  2Y2N A;  3HSH A;  2XD5 A;  3K42 A;  1E6R A;  4TX8 A;  4GHL A;  2M68 A;  4IBC A;  2L29 A;  2Y2Q A;  4IBB A;  1H0G A;  1GP3 A;  4NZ5 A;  1GP0 A;  2LVX A;  3L27 A;  3WD4 A;  4Z2K A;  1ED7 A;  1E88 A;  1C39 A;  3M7P A;  3K43 A;  2UWX A;  1E6Z A;  2D49 A;  4HMD A;  2XD1 A;  2M6T A;  1M6P A;  4NYU A;  3WX7 A;  1GPF A;  2RLB A;  2JCH A;  4Z2G A;  4IBI A;  4OJP A;  1EAK A;  4LG2 A;  2Y2L A;  2RTS A;  1OGG A;  4MB4 A;  3WD3 A;  5BPV A;  1GQB A;  1YU2 A;  2KVB A;  1YU4 A;  3K41 A;  2RL7 A;  4Z2I A;  1PDC A;  1SZ0 A;  2L21 A;  3HON A;  1GXD A;  2FN2 A;  2CNJ D;  3AIH A;  1H0I A;  1YU1 A;  3L29 A;  2Y2P A;  1YU0 A;  4QNL A;  3WD0 A;  4Z2H A;  3N3F A;  2JE5 A;  4HME A;  4NZ4 A;  1UR8 A;  1H8P A;  2Y2K A;  1L6J A;  4GH9 A;  5IEI A;  1E8B A;  1CK7 A;  1KS0 A;  3L26 A;  1AIW A;  1YU3 A;  1Q25 A;  4OJ5 A;  2Y2J A;  4MB3 A;  2V5N A;  4IBE A;  4IBF A;  1W1Y A;  2Y2I A;  1W1T A;  4IBJ A;  2N1H A;  1W1P A;  2RL9 A;  4OJO A;  2Y2G A;  1UR9 A;  2Y2H A;  1YUE A;  4NZ3 A;  3WD1 A;  1SYO A;  2Y2M A;  4IJF A;  2KVA A;  4NY2 A;  4NZ1 A;  2RL8 A;  2Y2O A;  4XQM A;  1E15 A;  3L25 A;  2L2G A;  4IBG A; 
#chains in the Genus database with same CATH homology
 2L2A A;  2RL7 A;  1E88 A;  1C39 A;  2V5N A;  2V5O A;  3M7P A;  3K43 A;  1J7M A;  1KEO A;  2N1H A;  3CY4 A;  2RL9 A;  1PDC A;  1SZ0 A;  2L21 A;  1GXD A;  2LLA A;  3MQL A;  1CXW A;  2FN2 A;  2CNJ D;  2M6T A;  3AIH A;  1M6P A;  1E6F A;  1QO6 A;  2L2G A;  3K42 A;  2RLB A;  1SYO A;  2KVA A;  2M68 A;  1H8P A;  5IEI A;  1EAK A;  1L6J A;  1E8B A;  1CK7 A;  2L29 A;  1KS0 A;  2RL8 A;  1GP3 A;  2LVX A;  4XQM A;  1GP0 A;  1Q25 A;  1GQB A;  2KVB A;  3K41 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.