1ML9A

Structure of the neurospora set domain protein dim-5, a histone lysine methyltransferase
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
284
structure length
260
Chain Sequence
QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNKISEMTKCLC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Histone H3 methyltransferase DIM-5
publication title Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase
pubmed doi rcsb
source organism Neurospora crassa
molecule tags Transferase
total genus 63
structure length 260
sequence length 284
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2002-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 1ml9A00
1N6AA 3CBMA 3VV0A 1ML9A 3M54A 3OS5A 3KMAA 3HNAA 1MVXA 5KJMA 5LSZA 3SWCA 3SW9A 5F59A 3CBPA 4BUPA 1N6CA 5F6KC 4YNDA 3S7JA 3OXLA 4NVQA 3KMJA 3MEKA 4YPAA 3VUZA 4O6FA 3M59A 5ARFA 3N71A 3M56A 4I51A 4O30A 3RQ4A 3F9ZA 4QEOA 3OXGA 5T0KA 5EX0A 4QENA 4J7IA 5TH7A 2F69A 5JINA 4RZ0A 1ZKKA 5HI7A 1H3IA 5T5GA 3DALA 3QWWA 4JDSA 4YPEA 3M57A 4NJ5A 3RIBA 4YPUA 5JHNA 3F9WA 3FPDA 5F5EA 5T0MA 3PDNA 5TTFA 2R3AA 3F9XA 5CCMA 5KJLA 5KJKA 4MI0A 3TG5A 2IGQA 5AYFA 4WUYA 4Z4PA 3KMTA 4IJ8A 2W5ZA 4FMUA 3M53A 3OPEA 4YNMA 2W5YA 5LSXA 4JLGA 3S8PA 3QWVA 4J8OA 4E47A 2RFIA 3TG4A 3F9YA 2O8JA 2G46A 3MO5A 5JIYA 5TEGA 3RAYA 3EP0A 3DB5A 3S7BA 1MT6A 5EX3A 4AU7A 3RU0A 3IHXA 4YNPA 3S7FA 3K5KA 4LDGA 5KJNA 4J83A 1MUFA 3MO0A 3MO2A 4C1QA 5ARGA 3M55A 3M58A 5CPRB 3OOIA 5EG2A 3RJWA 3OXFA 3CBOA 5HQ8A 3S7DA 1N3JA 3M5AA 3QWPA 3BO5A 5F6LA 2BQZA 4IJDA 4QEPA 2JV0A 1XQHA 1MVHA 4MI5A 1PEGA 4H12A 2QPWA 5JJ0A 1O9SA 4J7FA 5CCLA
chains in the Genus database with same CATH superfamily
1N6AA 3CBMA 3VV0A 1ML9A 3M54A 3OS5A 3KMAA 3HNAA 1MVXA 5KJMA 5LSZA 3SWCA 3SW9A 5F59A 3CBPA 4BUPA 1N6CA 5F6KC 4YNDA 3S7JA 3OXLA 4NVQA 3KMJA 3MEKA 4YPAA 3VUZA 4O6FA 3M59A 5ARFA 3N71A 3M56A 4I51A 4O30A 3RQ4A 3F9ZA 4QEOA 3OXGA 5T0KA 5EX0A 4QENA 4J7IA 5TH7A 2F69A 5JINA 4RZ0A 1ZKKA 5HI7A 1H3IA 5T5GA 3DALA 3QWWA 4JDSA 4YPEA 3M57A 4NJ5A 3RIBA 4YPUA 5JHNA 3F9WA 3FPDA 5F5EA 5T0MA 3PDNA 5TTFA 2R3AA 3F9XA 5CCMA 5KJLA 5KJKA 4MI0A 3TG5A 2IGQA 5AYFA 4WUYA 4Z4PA 3KMTA 4IJ8A 2W5ZA 4FMUA 3M53A 3OPEA 4YNMA 2W5YA 5LSXA 4JLGA 3S8PA 3QWVA 4J8OA 4E47A 2RFIA 3TG4A 3F9YA 2O8JA 2G46A 3MO5A 5JIYA 5TEGA 3RAYA 3EP0A 3DB5A 3S7BA 1MT6A 5EX3A 4AU7A 3RU0A 3IHXA 4YNPA 3S7FA 3K5KA 4LDGA 5KJNA 4J83A 1MUFA 3MO0A 3MO2A 4C1QA 5ARGA 3M55A 3M58A 5CPRB 3OOIA 5EG2A 3RJWA 3OXFA 3CBOA 5HQ8A 3S7DA 1N3JA 3M5AA 3QWPA 3BO5A 5F6LA 2BQZA 4IJDA 4QEPA 2JV0A 1XQHA 1MVHA 4MI5A 1PEGA 4H12A 2QPWA 5JJ0A 1O9SA 4J7FA 5CCLA
chains in the Genus database with same CATH topology
1N6AA 3CBMA 3VV0A 1ML9A 3M54A 3OS5A 3KMAA 3HNAA 1MVXA 5KJMA 5LSZA 3SWCA 3SW9A 5F59A 3CBPA 4BUPA 1N6CA 5F6KC 4YNDA 3S7JA 3OXLA 4NVQA 3KMJA 3MEKA 4YPAA 3VUZA 4O6FA 3M59A 5ARFA 3N71A 3M56A 4I51A 4O30A 3RQ4A 3F9ZA 4QEOA 3OXGA 5T0KA 5EX0A 4QENA 4J7IA 5TH7A 2F69A 5JINA 4RZ0A 1ZKKA 5HI7A 1H3IA 5T5GA 3DALA 3QWWA 4JDSA 4YPEA 3M57A 4NJ5A 3RIBA 4YPUA 5JHNA 3F9WA 3FPDA 5F5EA 5T0MA 3PDNA 5TTFA 2R3AA 3F9XA 5CCMA 5KJLA 5KJKA 4MI0A 3TG5A 2IGQA 5AYFA 4WUYA 4Z4PA 3KMTA 4IJ8A 2W5ZA 4FMUA 3M53A 3OPEA 4YNMA 2W5YA 5LSXA 4JLGA 3S8PA 3QWVA 4J8OA 4E47A 2RFIA 3TG4A 3F9YA 2O8JA 2G46A 3MO5A 5JIYA 5TEGA 3RAYA 3EP0A 3DB5A 3S7BA 1MT6A 5EX3A 4AU7A 3RU0A 3IHXA 4YNPA 3S7FA 3K5KA 4LDGA 5KJNA 4J83A 1MUFA 3MO0A 3MO2A 4C1QA 5ARGA 3M55A 3M58A 5CPRB 3OOIA 5EG2A 3RJWA 3OXFA 3CBOA 5HQ8A 3S7DA 1N3JA 3M5AA 3QWPA 3BO5A 5F6LA 2BQZA 4IJDA 4QEPA 2JV0A 1XQHA 1MVHA 4MI5A 1PEGA 4H12A 2QPWA 5JJ0A 1O9SA 4J7FA 5CCLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N6A A;  3CBM A;  3VV0 A;  1ML9 A;  3M54 A;  3OS5 A;  3KMA A;  3HNA A;  1MVX A;  5KJM A;  5LSZ A;  3SWC A;  3SW9 A;  5F59 A;  3CBP A;  4BUP A;  1N6C A;  5F6K C;  4YND A;  3S7J A;  3OXL A;  4NVQ A;  3KMJ A;  3MEK A;  4YPA A;  3VUZ A;  4O6F A;  3M59 A;  5ARF A;  3N71 A;  3M56 A;  4I51 A;  4O30 A;  3RQ4 A;  3F9Z A;  4QEO A;  3OXG A;  5T0K A;  5EX0 A;  4QEN A;  4J7I A;  5TH7 A;  2F69 A;  5JIN A;  4RZ0 A;  1ZKK A;  5HI7 A;  1H3I A;  5T5G A;  3DAL A;  3QWW A;  4JDS A;  4YPE A;  3M57 A;  4NJ5 A;  3RIB A;  4YPU A;  5JHN A;  3F9W A;  3FPD A;  5F5E A;  5T0M A;  3PDN A;  5TTF A;  2R3A A;  3F9X A;  5CCM A;  5KJL A;  5KJK A;  4MI0 A;  3TG5 A;  2IGQ A;  5AYF A;  4WUY A;  4Z4P A;  3KMT A;  4IJ8 A;  2W5Z A;  4FMU A;  3M53 A;  3OPE A;  4YNM A;  2W5Y A;  5LSX A;  4JLG A;  3S8P A;  3QWV A;  4J8O A;  4E47 A;  2RFI A;  3TG4 A;  3F9Y A;  2O8J A;  2G46 A;  3MO5 A;  5JIY A;  5TEG A;  3RAY A;  3EP0 A;  3DB5 A;  3S7B A;  1MT6 A;  5EX3 A;  4AU7 A;  3RU0 A;  3IHX A;  4YNP A;  3S7F A;  3K5K A;  4LDG A;  5KJN A;  4J83 A;  1MUF A;  3MO0 A;  3MO2 A;  4C1Q A;  5ARG A;  3M55 A;  3M58 A;  5CPR B;  3OOI A;  5EG2 A;  3RJW A;  3OXF A;  3CBO A;  5HQ8 A;  3S7D A;  1N3J A;  3M5A A;  3QWP A;  3BO5 A;  5F6L A;  2BQZ A;  4IJD A;  4QEP A;  2JV0 A;  1XQH A;  1MVH A;  4MI5 A;  1PEG A;  4H12 A;  2QPW A;  5JJ0 A;  1O9S A;  4J7F A;  5CCL A; 
#chains in the Genus database with same CATH topology
 1N6A A;  3CBM A;  3VV0 A;  1ML9 A;  3M54 A;  3OS5 A;  3KMA A;  3HNA A;  1MVX A;  5KJM A;  5LSZ A;  3SWC A;  3SW9 A;  5F59 A;  3CBP A;  4BUP A;  1N6C A;  5F6K C;  4YND A;  3S7J A;  3OXL A;  4NVQ A;  3KMJ A;  3MEK A;  4YPA A;  3VUZ A;  4O6F A;  3M59 A;  5ARF A;  3N71 A;  3M56 A;  4I51 A;  4O30 A;  3RQ4 A;  3F9Z A;  4QEO A;  3OXG A;  5T0K A;  5EX0 A;  4QEN A;  4J7I A;  5TH7 A;  2F69 A;  5JIN A;  4RZ0 A;  1ZKK A;  5HI7 A;  1H3I A;  5T5G A;  3DAL A;  3QWW A;  4JDS A;  4YPE A;  3M57 A;  4NJ5 A;  3RIB A;  4YPU A;  5JHN A;  3F9W A;  3FPD A;  5F5E A;  5T0M A;  3PDN A;  5TTF A;  2R3A A;  3F9X A;  5CCM A;  5KJL A;  5KJK A;  4MI0 A;  3TG5 A;  2IGQ A;  5AYF A;  4WUY A;  4Z4P A;  3KMT A;  4IJ8 A;  2W5Z A;  4FMU A;  3M53 A;  3OPE A;  4YNM A;  2W5Y A;  5LSX A;  4JLG A;  3S8P A;  3QWV A;  4J8O A;  4E47 A;  2RFI A;  3TG4 A;  3F9Y A;  2O8J A;  2G46 A;  3MO5 A;  5JIY A;  5TEG A;  3RAY A;  3EP0 A;  3DB5 A;  3S7B A;  1MT6 A;  5EX3 A;  4AU7 A;  3RU0 A;  3IHX A;  4YNP A;  3S7F A;  3K5K A;  4LDG A;  5KJN A;  4J83 A;  1MUF A;  3MO0 A;  3MO2 A;  4C1Q A;  5ARG A;  3M55 A;  3M58 A;  5CPR B;  3OOI A;  5EG2 A;  3RJW A;  3OXF A;  3CBO A;  5HQ8 A;  3S7D A;  1N3J A;  3M5A A;  3QWP A;  3BO5 A;  5F6L A;  2BQZ A;  4IJD A;  4QEP A;  2JV0 A;  1XQH A;  1MVH A;  4MI5 A;  1PEG A;  4H12 A;  2QPW A;  5JJ0 A;  1O9S A;  4J7F A;  5CCL A; 
#chains in the Genus database with same CATH homology
 1N6A A;  3CBM A;  3VV0 A;  1ML9 A;  3M54 A;  3OS5 A;  3KMA A;  3HNA A;  1MVX A;  5KJM A;  5LSZ A;  3SWC A;  3SW9 A;  5F59 A;  3CBP A;  4BUP A;  1N6C A;  5F6K C;  4YND A;  3S7J A;  3OXL A;  4NVQ A;  3KMJ A;  3MEK A;  4YPA A;  3VUZ A;  4O6F A;  3M59 A;  5ARF A;  3N71 A;  3M56 A;  4I51 A;  4O30 A;  3RQ4 A;  3F9Z A;  4QEO A;  3OXG A;  5T0K A;  5EX0 A;  4QEN A;  4J7I A;  5TH7 A;  2F69 A;  5JIN A;  4RZ0 A;  1ZKK A;  5HI7 A;  1H3I A;  5T5G A;  3DAL A;  3QWW A;  4JDS A;  4YPE A;  3M57 A;  4NJ5 A;  3RIB A;  4YPU A;  5JHN A;  3F9W A;  3FPD A;  5F5E A;  5T0M A;  3PDN A;  5TTF A;  2R3A A;  3F9X A;  5CCM A;  5KJL A;  5KJK A;  4MI0 A;  3TG5 A;  2IGQ A;  5AYF A;  4WUY A;  4Z4P A;  3KMT A;  4IJ8 A;  2W5Z A;  4FMU A;  3M53 A;  3OPE A;  4YNM A;  2W5Y A;  5LSX A;  4JLG A;  3S8P A;  3QWV A;  4J8O A;  4E47 A;  2RFI A;  3TG4 A;  3F9Y A;  2O8J A;  2G46 A;  3MO5 A;  5JIY A;  5TEG A;  3RAY A;  3EP0 A;  3DB5 A;  3S7B A;  1MT6 A;  5EX3 A;  4AU7 A;  3RU0 A;  3IHX A;  4YNP A;  3S7F A;  3K5K A;  4LDG A;  5KJN A;  4J83 A;  1MUF A;  3MO0 A;  3MO2 A;  4C1Q A;  5ARG A;  3M55 A;  3M58 A;  5CPR B;  3OOI A;  5EG2 A;  3RJW A;  3OXF A;  3CBO A;  5HQ8 A;  3S7D A;  1N3J A;  3M5A A;  3QWP A;  3BO5 A;  5F6L A;  2BQZ A;  4IJD A;  4QEP A;  2JV0 A;  1XQH A;  1MVH A;  4MI5 A;  1PEG A;  4H12 A;  2QPW A;  5JJ0 A;  1O9S A;  4J7F A;  5CCL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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