1ML9A

Structure of the neurospora set domain protein dim-5, a histone lysine methyltransferase
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
284
structure length
260
Chain Sequence
QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNKISEMTKCLC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Histone H3 methyltransferase DIM-5
publication title Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase
pubmed doi rcsb
source organism Neurospora crassa
total genus 63
structure length 260
sequence length 284
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2002-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 1ml9A00
4YPEA 3F9ZA 3MO0A 5TTFA 5KJLA 4AU7A 3RQ4A 3KMTA 3OXFA 5AYFA 4Z4PA 4YPAA 3TG5A 3QWVA 4IJ8A 5ARFA 3RIBA 3HNAA 3K5KA 5F5EA 5F6KC 4O6FA 5T0KA 3M57A 3RU0A 5KJMA 3DB5A 3OOIA 4I51A 3M54A 3S7DA 5CPRB 4MI0A 1N6CA 1O9SA 3DALA 3S7FA 4J8OA 1MVHA 5T5GA 5JIYA 4JDSA 4YPUA 4C1QA 2RFIA 1XQHA 5TH7A 4WUYA 3BO5A 4QEPA 5LSZA 3N71A 4J7IA 4O30A 3MO5A 3S7BA 3OPEA 2W5ZA 4FMUA 2QPWA 5F6LA 3TG4A 3M53A 4LDGA 4JLGA 3S7JA 5LSXA 3QWWA 3S8PA 4YNPA 3M5AA 1PEGA 5EG2A 5HI7A 3OS5A 3OXLA 3RAYA 3M59A 5KJNA 3QWPA 3M56A 4IJDA 2IGQA 3MO2A 3F9YA 3CBOA 4NVQA 5EX3A 4RZ0A 5TEGA 3VUZA 3VV0A 1N6AA 3CBMA 3RJWA 5F59A 3MEKA 4YNDA 5JINA 2JV0A 4E47A 3F9WA 1N3JA 2W5YA 4J83A 1ML9A 2R3AA 2F69A 2G46A 1MVXA 3M55A 4QENA 5CCMA 3IHXA 5ARGA 4H12A 3KMAA 3SW9A 5CCLA 3M58A 2O8JA 3KMJA 3F9XA 3OXGA 2BQZA 5T0MA 5EX0A 5JJ0A 4MI5A 4J7FA 4YNMA 1MT6A 5KJKA 3PDNA 5HQ8A 5JHNA 4QEOA 3EP0A 4NJ5A 1H3IA 3CBPA 3FPDA 4BUPA 1ZKKA 1MUFA 3SWCA
chains in the Genus database with same CATH superfamily
4YPEA 3F9ZA 3MO0A 5TTFA 5KJLA 4AU7A 3RQ4A 3KMTA 3OXFA 5AYFA 4Z4PA 4YPAA 3TG5A 3QWVA 4IJ8A 5ARFA 3RIBA 3HNAA 3K5KA 5F5EA 5F6KC 4O6FA 5T0KA 3M57A 3RU0A 5KJMA 3DB5A 3OOIA 4I51A 3M54A 3S7DA 5CPRB 4MI0A 1N6CA 1O9SA 3DALA 3S7FA 4J8OA 1MVHA 5T5GA 5JIYA 4JDSA 4YPUA 4C1QA 2RFIA 1XQHA 5TH7A 4WUYA 3BO5A 4QEPA 5LSZA 3N71A 4J7IA 4O30A 3MO5A 3S7BA 3OPEA 2W5ZA 4FMUA 2QPWA 5F6LA 3TG4A 3M53A 4LDGA 4JLGA 3S7JA 5LSXA 3QWWA 3S8PA 4YNPA 3M5AA 1PEGA 5EG2A 5HI7A 3OS5A 3OXLA 3RAYA 3M59A 5KJNA 3QWPA 3M56A 4IJDA 2IGQA 3MO2A 3F9YA 3CBOA 4NVQA 5EX3A 4RZ0A 5TEGA 3VUZA 3VV0A 1N6AA 3CBMA 3RJWA 5F59A 3MEKA 4YNDA 5JINA 2JV0A 4E47A 3F9WA 1N3JA 2W5YA 4J83A 1ML9A 2R3AA 2F69A 2G46A 1MVXA 3M55A 4QENA 5CCMA 3IHXA 5ARGA 4H12A 3KMAA 3SW9A 5CCLA 3M58A 2O8JA 3KMJA 3F9XA 3OXGA 2BQZA 5T0MA 5EX0A 5JJ0A 4MI5A 4J7FA 4YNMA 1MT6A 5KJKA 3PDNA 5HQ8A 5JHNA 4QEOA 3EP0A 4NJ5A 1H3IA 3CBPA 3FPDA 4BUPA 1ZKKA 1MUFA 3SWCA
chains in the Genus database with same CATH topology
4YPEA 3F9ZA 3MO0A 5TTFA 5KJLA 4AU7A 3RQ4A 3KMTA 3OXFA 5AYFA 4Z4PA 4YPAA 3TG5A 3QWVA 4IJ8A 5ARFA 3RIBA 3HNAA 3K5KA 5F5EA 5F6KC 4O6FA 5T0KA 3M57A 3RU0A 5KJMA 3DB5A 3OOIA 4I51A 3M54A 3S7DA 5CPRB 4MI0A 1N6CA 1O9SA 3DALA 3S7FA 4J8OA 1MVHA 5T5GA 5JIYA 4JDSA 4YPUA 4C1QA 2RFIA 1XQHA 5TH7A 4WUYA 3BO5A 4QEPA 5LSZA 3N71A 4J7IA 4O30A 3MO5A 3S7BA 3OPEA 2W5ZA 4FMUA 2QPWA 5F6LA 3TG4A 3M53A 4LDGA 4JLGA 3S7JA 5LSXA 3QWWA 3S8PA 4YNPA 3M5AA 1PEGA 5EG2A 5HI7A 3OS5A 3OXLA 3RAYA 3M59A 5KJNA 3QWPA 3M56A 4IJDA 2IGQA 3MO2A 3F9YA 3CBOA 4NVQA 5EX3A 4RZ0A 5TEGA 3VUZA 3VV0A 1N6AA 3CBMA 3RJWA 5F59A 3MEKA 4YNDA 5JINA 2JV0A 4E47A 3F9WA 1N3JA 2W5YA 4J83A 1ML9A 2R3AA 2F69A 2G46A 1MVXA 3M55A 4QENA 5CCMA 3IHXA 5ARGA 4H12A 3KMAA 3SW9A 5CCLA 3M58A 2O8JA 3KMJA 3F9XA 3OXGA 2BQZA 5T0MA 5EX0A 5JJ0A 4MI5A 4J7FA 4YNMA 1MT6A 5KJKA 3PDNA 5HQ8A 5JHNA 4QEOA 3EP0A 4NJ5A 1H3IA 3CBPA 3FPDA 4BUPA 1ZKKA 1MUFA 3SWCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YPE A;  3F9Z A;  3MO0 A;  5TTF A;  5KJL A;  4AU7 A;  3RQ4 A;  3KMT A;  3OXF A;  5AYF A;  4Z4P A;  4YPA A;  3TG5 A;  3QWV A;  4IJ8 A;  5ARF A;  3RIB A;  3HNA A;  3K5K A;  5F5E A;  5F6K C;  4O6F A;  5T0K A;  3M57 A;  3RU0 A;  5KJM A;  3DB5 A;  3OOI A;  4I51 A;  3M54 A;  3S7D A;  5CPR B;  4MI0 A;  1N6C A;  1O9S A;  3DAL A;  3S7F A;  4J8O A;  1MVH A;  5T5G A;  5JIY A;  4JDS A;  4YPU A;  4C1Q A;  2RFI A;  1XQH A;  5TH7 A;  4WUY A;  3BO5 A;  4QEP A;  5LSZ A;  3N71 A;  4J7I A;  4O30 A;  3MO5 A;  3S7B A;  3OPE A;  2W5Z A;  4FMU A;  2QPW A;  5F6L A;  3TG4 A;  3M53 A;  4LDG A;  4JLG A;  3S7J A;  5LSX A;  3QWW A;  3S8P A;  4YNP A;  3M5A A;  1PEG A;  5EG2 A;  5HI7 A;  3OS5 A;  3OXL A;  3RAY A;  3M59 A;  5KJN A;  3QWP A;  3M56 A;  4IJD A;  2IGQ A;  3MO2 A;  3F9Y A;  3CBO A;  4NVQ A;  5EX3 A;  4RZ0 A;  5TEG A;  3VUZ A;  3VV0 A;  1N6A A;  3CBM A;  3RJW A;  5F59 A;  3MEK A;  4YND A;  5JIN A;  2JV0 A;  4E47 A;  3F9W A;  1N3J A;  2W5Y A;  4J83 A;  1ML9 A;  2R3A A;  2F69 A;  2G46 A;  1MVX A;  3M55 A;  4QEN A;  5CCM A;  3IHX A;  5ARG A;  4H12 A;  3KMA A;  3SW9 A;  5CCL A;  3M58 A;  2O8J A;  3KMJ A;  3F9X A;  3OXG A;  2BQZ A;  5T0M A;  5EX0 A;  5JJ0 A;  4MI5 A;  4J7F A;  4YNM A;  1MT6 A;  5KJK A;  3PDN A;  5HQ8 A;  5JHN A;  4QEO A;  3EP0 A;  4NJ5 A;  1H3I A;  3CBP A;  3FPD A;  4BUP A;  1ZKK A;  1MUF A;  3SWC A; 
#chains in the Genus database with same CATH topology
 4YPE A;  3F9Z A;  3MO0 A;  5TTF A;  5KJL A;  4AU7 A;  3RQ4 A;  3KMT A;  3OXF A;  5AYF A;  4Z4P A;  4YPA A;  3TG5 A;  3QWV A;  4IJ8 A;  5ARF A;  3RIB A;  3HNA A;  3K5K A;  5F5E A;  5F6K C;  4O6F A;  5T0K A;  3M57 A;  3RU0 A;  5KJM A;  3DB5 A;  3OOI A;  4I51 A;  3M54 A;  3S7D A;  5CPR B;  4MI0 A;  1N6C A;  1O9S A;  3DAL A;  3S7F A;  4J8O A;  1MVH A;  5T5G A;  5JIY A;  4JDS A;  4YPU A;  4C1Q A;  2RFI A;  1XQH A;  5TH7 A;  4WUY A;  3BO5 A;  4QEP A;  5LSZ A;  3N71 A;  4J7I A;  4O30 A;  3MO5 A;  3S7B A;  3OPE A;  2W5Z A;  4FMU A;  2QPW A;  5F6L A;  3TG4 A;  3M53 A;  4LDG A;  4JLG A;  3S7J A;  5LSX A;  3QWW A;  3S8P A;  4YNP A;  3M5A A;  1PEG A;  5EG2 A;  5HI7 A;  3OS5 A;  3OXL A;  3RAY A;  3M59 A;  5KJN A;  3QWP A;  3M56 A;  4IJD A;  2IGQ A;  3MO2 A;  3F9Y A;  3CBO A;  4NVQ A;  5EX3 A;  4RZ0 A;  5TEG A;  3VUZ A;  3VV0 A;  1N6A A;  3CBM A;  3RJW A;  5F59 A;  3MEK A;  4YND A;  5JIN A;  2JV0 A;  4E47 A;  3F9W A;  1N3J A;  2W5Y A;  4J83 A;  1ML9 A;  2R3A A;  2F69 A;  2G46 A;  1MVX A;  3M55 A;  4QEN A;  5CCM A;  3IHX A;  5ARG A;  4H12 A;  3KMA A;  3SW9 A;  5CCL A;  3M58 A;  2O8J A;  3KMJ A;  3F9X A;  3OXG A;  2BQZ A;  5T0M A;  5EX0 A;  5JJ0 A;  4MI5 A;  4J7F A;  4YNM A;  1MT6 A;  5KJK A;  3PDN A;  5HQ8 A;  5JHN A;  4QEO A;  3EP0 A;  4NJ5 A;  1H3I A;  3CBP A;  3FPD A;  4BUP A;  1ZKK A;  1MUF A;  3SWC A; 
#chains in the Genus database with same CATH homology
 4YPE A;  3F9Z A;  3MO0 A;  5TTF A;  5KJL A;  4AU7 A;  3RQ4 A;  3KMT A;  3OXF A;  5AYF A;  4Z4P A;  4YPA A;  3TG5 A;  3QWV A;  4IJ8 A;  5ARF A;  3RIB A;  3HNA A;  3K5K A;  5F5E A;  5F6K C;  4O6F A;  5T0K A;  3M57 A;  3RU0 A;  5KJM A;  3DB5 A;  3OOI A;  4I51 A;  3M54 A;  3S7D A;  5CPR B;  4MI0 A;  1N6C A;  1O9S A;  3DAL A;  3S7F A;  4J8O A;  1MVH A;  5T5G A;  5JIY A;  4JDS A;  4YPU A;  4C1Q A;  2RFI A;  1XQH A;  5TH7 A;  4WUY A;  3BO5 A;  4QEP A;  5LSZ A;  3N71 A;  4J7I A;  4O30 A;  3MO5 A;  3S7B A;  3OPE A;  2W5Z A;  4FMU A;  2QPW A;  5F6L A;  3TG4 A;  3M53 A;  4LDG A;  4JLG A;  3S7J A;  5LSX A;  3QWW A;  3S8P A;  4YNP A;  3M5A A;  1PEG A;  5EG2 A;  5HI7 A;  3OS5 A;  3OXL A;  3RAY A;  3M59 A;  5KJN A;  3QWP A;  3M56 A;  4IJD A;  2IGQ A;  3MO2 A;  3F9Y A;  3CBO A;  4NVQ A;  5EX3 A;  4RZ0 A;  5TEG A;  3VUZ A;  3VV0 A;  1N6A A;  3CBM A;  3RJW A;  5F59 A;  3MEK A;  4YND A;  5JIN A;  2JV0 A;  4E47 A;  3F9W A;  1N3J A;  2W5Y A;  4J83 A;  1ML9 A;  2R3A A;  2F69 A;  2G46 A;  1MVX A;  3M55 A;  4QEN A;  5CCM A;  3IHX A;  5ARG A;  4H12 A;  3KMA A;  3SW9 A;  5CCL A;  3M58 A;  2O8J A;  3KMJ A;  3F9X A;  3OXG A;  2BQZ A;  5T0M A;  5EX0 A;  5JJ0 A;  4MI5 A;  4J7F A;  4YNM A;  1MT6 A;  5KJK A;  3PDN A;  5HQ8 A;  5JHN A;  4QEO A;  3EP0 A;  4NJ5 A;  1H3I A;  3CBP A;  3FPD A;  4BUP A;  1ZKK A;  1MUF A;  3SWC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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