1ML9A

Structure of the neurospora set domain protein dim-5, a histone lysine methyltransferase
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
284
structure length
260
Chain Sequence
b'QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNKISEMTKCLC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Histone H3 methyltransferase DIM-5
molecule tags Transferase
source organism Neurospora crassa
publication title Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase
pubmed doi rcsb
total genus 63
structure length 260
sequence length 284
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2002-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 1ml9A00
3S7DA 4O6FA 5F59A 4BUPA 5KJLA 3OXGA 4AU7A 3F9ZA 3M55A 5T5GA 3KMTA 5LSZA 3RU0A 5F6KC 4O30A 3KMJA 4WUYA 4YNPA 5CCMA 1N3JA 3OXLA 2RFIA 3IHXA 3SW9A 3VV0A 4YNDA 4YPEA 4J8OA 3RJWA 3F9YA 3N71A 3MEKA 5T0KA 5JIYA 1MVXA 3TG5A 2IGQA 2JV0A 3PDNA 5KJKA 3RAYA 4QEOA 4QENA 4JLGA 4IJDA 3F9WA 1N6AA 5TH7A 4RZ0A 3M5AA 1PEGA 4Z4PA 2W5ZA 3M58A 3TG4A 4JDSA 5LSXA 3EP0A 4E47A 5CPRB 5TEGA 3CBMA 5F5EA 5EX0A 3M53A 3M59A 4MI5A 3SWCA 3M56A 4J7FA 3OOIA 2O8JA 4LDGA 1H3IA 5EG2A 1ZKKA 1ML9A 2BQZA 2F69A 4J83A 5TTFA 5JINA 4IJ8A 5AYFA 2QPWA 5JHNA 4C1QA 2G46A 1MT6A 5F6LA 1MVHA 1N6CA 5EX3A 3HNAA 3S7JA 5HI7A 3VUZA 3M54A 2W5YA 3S7FA 3FPDA 3M57A 5KJMA 3OS5A 3OXFA 5T0MA 1O9SA 3S7BA 5JJ0A 5CCLA 3DB5A 4H12A 3BO5A 3QWPA 5KJNA 3S8PA 4NVQA 2R3AA 4NJ5A 4MI0A 5ARGA 3F9XA 4J7IA 1MUFA 3DALA 5ARFA 3MO0A 3OPEA 3MO2A 1XQHA 4I51A 3RIBA 4YNMA 3CBPA 4YPAA 3K5KA 5HQ8A 3QWWA 4YPUA 3RQ4A 4FMUA 3QWVA 3KMAA 4QEPA 3CBOA 3MO5A
chains in the Genus database with same CATH superfamily
3S7DA 4O6FA 5F59A 4BUPA 5KJLA 3OXGA 4AU7A 3F9ZA 3M55A 5T5GA 3KMTA 5LSZA 3RU0A 5F6KC 4O30A 3KMJA 4WUYA 4YNPA 5CCMA 1N3JA 3OXLA 2RFIA 3IHXA 3SW9A 3VV0A 4YNDA 4YPEA 4J8OA 3RJWA 3F9YA 3N71A 3MEKA 5T0KA 5JIYA 1MVXA 3TG5A 2IGQA 2JV0A 3PDNA 5KJKA 3RAYA 4QEOA 4QENA 4JLGA 4IJDA 3F9WA 1N6AA 5TH7A 4RZ0A 3M5AA 1PEGA 4Z4PA 2W5ZA 3M58A 3TG4A 4JDSA 5LSXA 3EP0A 4E47A 5CPRB 5TEGA 3CBMA 5F5EA 5EX0A 3M53A 3M59A 4MI5A 3SWCA 3M56A 4J7FA 3OOIA 2O8JA 4LDGA 1H3IA 5EG2A 1ZKKA 1ML9A 2BQZA 2F69A 4J83A 5TTFA 5JINA 4IJ8A 5AYFA 2QPWA 5JHNA 4C1QA 2G46A 1MT6A 5F6LA 1MVHA 1N6CA 5EX3A 3HNAA 3S7JA 5HI7A 3VUZA 3M54A 2W5YA 3S7FA 3FPDA 3M57A 5KJMA 3OS5A 3OXFA 5T0MA 1O9SA 3S7BA 5JJ0A 5CCLA 3DB5A 4H12A 3BO5A 3QWPA 5KJNA 3S8PA 4NVQA 2R3AA 4NJ5A 4MI0A 5ARGA 3F9XA 4J7IA 1MUFA 3DALA 5ARFA 3MO0A 3OPEA 3MO2A 1XQHA 4I51A 3RIBA 4YNMA 3CBPA 4YPAA 3K5KA 5HQ8A 3QWWA 4YPUA 3RQ4A 4FMUA 3QWVA 3KMAA 4QEPA 3CBOA 3MO5A
chains in the Genus database with same CATH topology
3S7DA 4O6FA 5F59A 4BUPA 5KJLA 3OXGA 4AU7A 3F9ZA 3M55A 5T5GA 3KMTA 5LSZA 3RU0A 5F6KC 4O30A 3KMJA 4WUYA 4YNPA 5CCMA 1N3JA 3OXLA 2RFIA 3IHXA 3SW9A 3VV0A 4YNDA 4YPEA 4J8OA 3RJWA 3F9YA 3N71A 3MEKA 5T0KA 5JIYA 1MVXA 3TG5A 2IGQA 2JV0A 3PDNA 5KJKA 3RAYA 4QEOA 4QENA 4JLGA 4IJDA 3F9WA 1N6AA 5TH7A 4RZ0A 3M5AA 1PEGA 4Z4PA 2W5ZA 3M58A 3TG4A 4JDSA 5LSXA 3EP0A 4E47A 5CPRB 5TEGA 3CBMA 5F5EA 5EX0A 3M53A 3M59A 4MI5A 3SWCA 3M56A 4J7FA 3OOIA 2O8JA 4LDGA 1H3IA 5EG2A 1ZKKA 1ML9A 2BQZA 2F69A 4J83A 5TTFA 5JINA 4IJ8A 5AYFA 2QPWA 5JHNA 4C1QA 2G46A 1MT6A 5F6LA 1MVHA 1N6CA 5EX3A 3HNAA 3S7JA 5HI7A 3VUZA 3M54A 2W5YA 3S7FA 3FPDA 3M57A 5KJMA 3OS5A 3OXFA 5T0MA 1O9SA 3S7BA 5JJ0A 5CCLA 3DB5A 4H12A 3BO5A 3QWPA 5KJNA 3S8PA 4NVQA 2R3AA 4NJ5A 4MI0A 5ARGA 3F9XA 4J7IA 1MUFA 3DALA 5ARFA 3MO0A 3OPEA 3MO2A 1XQHA 4I51A 3RIBA 4YNMA 3CBPA 4YPAA 3K5KA 5HQ8A 3QWWA 4YPUA 3RQ4A 4FMUA 3QWVA 3KMAA 4QEPA 3CBOA 3MO5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S7D A;  4O6F A;  5F59 A;  4BUP A;  5KJL A;  3OXG A;  4AU7 A;  3F9Z A;  3M55 A;  5T5G A;  3KMT A;  5LSZ A;  3RU0 A;  5F6K C;  4O30 A;  3KMJ A;  4WUY A;  4YNP A;  5CCM A;  1N3J A;  3OXL A;  2RFI A;  3IHX A;  3SW9 A;  3VV0 A;  4YND A;  4YPE A;  4J8O A;  3RJW A;  3F9Y A;  3N71 A;  3MEK A;  5T0K A;  5JIY A;  1MVX A;  3TG5 A;  2IGQ A;  2JV0 A;  3PDN A;  5KJK A;  3RAY A;  4QEO A;  4QEN A;  4JLG A;  4IJD A;  3F9W A;  1N6A A;  5TH7 A;  4RZ0 A;  3M5A A;  1PEG A;  4Z4P A;  2W5Z A;  3M58 A;  3TG4 A;  4JDS A;  5LSX A;  3EP0 A;  4E47 A;  5CPR B;  5TEG A;  3CBM A;  5F5E A;  5EX0 A;  3M53 A;  3M59 A;  4MI5 A;  3SWC A;  3M56 A;  4J7F A;  3OOI A;  2O8J A;  4LDG A;  1H3I A;  5EG2 A;  1ZKK A;  1ML9 A;  2BQZ A;  2F69 A;  4J83 A;  5TTF A;  5JIN A;  4IJ8 A;  5AYF A;  2QPW A;  5JHN A;  4C1Q A;  2G46 A;  1MT6 A;  5F6L A;  1MVH A;  1N6C A;  5EX3 A;  3HNA A;  3S7J A;  5HI7 A;  3VUZ A;  3M54 A;  2W5Y A;  3S7F A;  3FPD A;  3M57 A;  5KJM A;  3OS5 A;  3OXF A;  5T0M A;  1O9S A;  3S7B A;  5JJ0 A;  5CCL A;  3DB5 A;  4H12 A;  3BO5 A;  3QWP A;  5KJN A;  3S8P A;  4NVQ A;  2R3A A;  4NJ5 A;  4MI0 A;  5ARG A;  3F9X A;  4J7I A;  1MUF A;  3DAL A;  5ARF A;  3MO0 A;  3OPE A;  3MO2 A;  1XQH A;  4I51 A;  3RIB A;  4YNM A;  3CBP A;  4YPA A;  3K5K A;  5HQ8 A;  3QWW A;  4YPU A;  3RQ4 A;  4FMU A;  3QWV A;  3KMA A;  4QEP A;  3CBO A;  3MO5 A; 
#chains in the Genus database with same CATH topology
 3S7D A;  4O6F A;  5F59 A;  4BUP A;  5KJL A;  3OXG A;  4AU7 A;  3F9Z A;  3M55 A;  5T5G A;  3KMT A;  5LSZ A;  3RU0 A;  5F6K C;  4O30 A;  3KMJ A;  4WUY A;  4YNP A;  5CCM A;  1N3J A;  3OXL A;  2RFI A;  3IHX A;  3SW9 A;  3VV0 A;  4YND A;  4YPE A;  4J8O A;  3RJW A;  3F9Y A;  3N71 A;  3MEK A;  5T0K A;  5JIY A;  1MVX A;  3TG5 A;  2IGQ A;  2JV0 A;  3PDN A;  5KJK A;  3RAY A;  4QEO A;  4QEN A;  4JLG A;  4IJD A;  3F9W A;  1N6A A;  5TH7 A;  4RZ0 A;  3M5A A;  1PEG A;  4Z4P A;  2W5Z A;  3M58 A;  3TG4 A;  4JDS A;  5LSX A;  3EP0 A;  4E47 A;  5CPR B;  5TEG A;  3CBM A;  5F5E A;  5EX0 A;  3M53 A;  3M59 A;  4MI5 A;  3SWC A;  3M56 A;  4J7F A;  3OOI A;  2O8J A;  4LDG A;  1H3I A;  5EG2 A;  1ZKK A;  1ML9 A;  2BQZ A;  2F69 A;  4J83 A;  5TTF A;  5JIN A;  4IJ8 A;  5AYF A;  2QPW A;  5JHN A;  4C1Q A;  2G46 A;  1MT6 A;  5F6L A;  1MVH A;  1N6C A;  5EX3 A;  3HNA A;  3S7J A;  5HI7 A;  3VUZ A;  3M54 A;  2W5Y A;  3S7F A;  3FPD A;  3M57 A;  5KJM A;  3OS5 A;  3OXF A;  5T0M A;  1O9S A;  3S7B A;  5JJ0 A;  5CCL A;  3DB5 A;  4H12 A;  3BO5 A;  3QWP A;  5KJN A;  3S8P A;  4NVQ A;  2R3A A;  4NJ5 A;  4MI0 A;  5ARG A;  3F9X A;  4J7I A;  1MUF A;  3DAL A;  5ARF A;  3MO0 A;  3OPE A;  3MO2 A;  1XQH A;  4I51 A;  3RIB A;  4YNM A;  3CBP A;  4YPA A;  3K5K A;  5HQ8 A;  3QWW A;  4YPU A;  3RQ4 A;  4FMU A;  3QWV A;  3KMA A;  4QEP A;  3CBO A;  3MO5 A; 
#chains in the Genus database with same CATH homology
 3S7D A;  4O6F A;  5F59 A;  4BUP A;  5KJL A;  3OXG A;  4AU7 A;  3F9Z A;  3M55 A;  5T5G A;  3KMT A;  5LSZ A;  3RU0 A;  5F6K C;  4O30 A;  3KMJ A;  4WUY A;  4YNP A;  5CCM A;  1N3J A;  3OXL A;  2RFI A;  3IHX A;  3SW9 A;  3VV0 A;  4YND A;  4YPE A;  4J8O A;  3RJW A;  3F9Y A;  3N71 A;  3MEK A;  5T0K A;  5JIY A;  1MVX A;  3TG5 A;  2IGQ A;  2JV0 A;  3PDN A;  5KJK A;  3RAY A;  4QEO A;  4QEN A;  4JLG A;  4IJD A;  3F9W A;  1N6A A;  5TH7 A;  4RZ0 A;  3M5A A;  1PEG A;  4Z4P A;  2W5Z A;  3M58 A;  3TG4 A;  4JDS A;  5LSX A;  3EP0 A;  4E47 A;  5CPR B;  5TEG A;  3CBM A;  5F5E A;  5EX0 A;  3M53 A;  3M59 A;  4MI5 A;  3SWC A;  3M56 A;  4J7F A;  3OOI A;  2O8J A;  4LDG A;  1H3I A;  5EG2 A;  1ZKK A;  1ML9 A;  2BQZ A;  2F69 A;  4J83 A;  5TTF A;  5JIN A;  4IJ8 A;  5AYF A;  2QPW A;  5JHN A;  4C1Q A;  2G46 A;  1MT6 A;  5F6L A;  1MVH A;  1N6C A;  5EX3 A;  3HNA A;  3S7J A;  5HI7 A;  3VUZ A;  3M54 A;  2W5Y A;  3S7F A;  3FPD A;  3M57 A;  5KJM A;  3OS5 A;  3OXF A;  5T0M A;  1O9S A;  3S7B A;  5JJ0 A;  5CCL A;  3DB5 A;  4H12 A;  3BO5 A;  3QWP A;  5KJN A;  3S8P A;  4NVQ A;  2R3A A;  4NJ5 A;  4MI0 A;  5ARG A;  3F9X A;  4J7I A;  1MUF A;  3DAL A;  5ARF A;  3MO0 A;  3OPE A;  3MO2 A;  1XQH A;  4I51 A;  3RIB A;  4YNM A;  3CBP A;  4YPA A;  3K5K A;  5HQ8 A;  3QWW A;  4YPU A;  3RQ4 A;  4FMU A;  3QWV A;  3KMA A;  4QEP A;  3CBO A;  3MO5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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