1ML9A

Structure of the neurospora set domain protein dim-5, a histone lysine methyltransferase
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
284
structure length
260
Chain Sequence
QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNKISEMTKCLC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Histone H3 methyltransferase DIM-5
publication title Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase
pubmed doi rcsb
source organism Neurospora crassa
molecule tags Transferase
total genus 63
structure length 260
sequence length 284
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2002-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 1ml9A00
3BO5A 3DB5A 4YNMA 5CCLA 1ZKKA 5EX0A 3DALA 3OS5A 3RIBA 5KJKA 4LDGA 5ARGA 5T0KA 1MUFA 4QENA 3FPDA 3F9ZA 4O6FA 4H12A 3RJWA 5JJ0A 5T5GA 5LSZA 4JDSA 3S7BA 3K5KA 4JLGA 4I51A 3M55A 3F9WA 2RFIA 4O30A 4RZ0A 3SW9A 4FMUA 4J7FA 4NJ5A 1N6AA 1PEGA 3PDNA 4YNPA 4Z4PA 2BQZA 3QWWA 4YPEA 5KJLA 5JINA 5HI7A 3N71A 5JIYA 3MO2A 4YNDA 4YPUA 3S7JA 5F6KC 3CBPA 2JV0A 3M54A 3F9XA 1H3IA 1N3JA 3M5AA 3TG5A 3EP0A 3IHXA 3M58A 1MVHA 4E47A 5F6LA 5TEGA 3M53A 3MO5A 5TH7A 4MI0A 1N6CA 5EG2A 5F5EA 3KMJA 4IJDA 3VV0A 4J83A 3M59A 1O9SA 4J7IA 3S8PA 5CPRB 3RQ4A 4QEOA 1XQHA 5CCMA 3M56A 1ML9A 3OPEA 3TG4A 3OOIA 3S7DA 4AU7A 3HNAA 3RAYA 5JHNA 3VUZA 4MI5A 2O8JA 3QWVA 3M57A 5AYFA 3CBMA 3QWPA 4BUPA 3S7FA 4YPAA 3RU0A 2F69A 1MT6A 5F59A 4J8OA 4C1QA 1MVXA 3OXLA 5LSXA 2IGQA 5KJMA 3SWCA 2W5YA 3KMTA 3OXGA 5KJNA 4IJ8A 5HQ8A 5ARFA 4QEPA 2R3AA 3OXFA 3MEKA 3MO0A 4WUYA 5EX3A 3F9YA 2QPWA 5T0MA 5TTFA 2G46A 2W5ZA 4NVQA 3KMAA 3CBOA
chains in the Genus database with same CATH superfamily
3BO5A 3DB5A 4YNMA 5CCLA 1ZKKA 5EX0A 3DALA 3OS5A 3RIBA 5KJKA 4LDGA 5ARGA 5T0KA 1MUFA 4QENA 3FPDA 3F9ZA 4O6FA 4H12A 3RJWA 5JJ0A 5T5GA 5LSZA 4JDSA 3S7BA 3K5KA 4JLGA 4I51A 3M55A 3F9WA 2RFIA 4O30A 4RZ0A 3SW9A 4FMUA 4J7FA 4NJ5A 1N6AA 1PEGA 3PDNA 4YNPA 4Z4PA 2BQZA 3QWWA 4YPEA 5KJLA 5JINA 5HI7A 3N71A 5JIYA 3MO2A 4YNDA 4YPUA 3S7JA 5F6KC 3CBPA 2JV0A 3M54A 3F9XA 1H3IA 1N3JA 3M5AA 3TG5A 3EP0A 3IHXA 3M58A 1MVHA 4E47A 5F6LA 5TEGA 3M53A 3MO5A 5TH7A 4MI0A 1N6CA 5EG2A 5F5EA 3KMJA 4IJDA 3VV0A 4J83A 3M59A 1O9SA 4J7IA 3S8PA 5CPRB 3RQ4A 4QEOA 1XQHA 5CCMA 3M56A 1ML9A 3OPEA 3TG4A 3OOIA 3S7DA 4AU7A 3HNAA 3RAYA 5JHNA 3VUZA 4MI5A 2O8JA 3QWVA 3M57A 5AYFA 3CBMA 3QWPA 4BUPA 3S7FA 4YPAA 3RU0A 2F69A 1MT6A 5F59A 4J8OA 4C1QA 1MVXA 3OXLA 5LSXA 2IGQA 5KJMA 3SWCA 2W5YA 3KMTA 3OXGA 5KJNA 4IJ8A 5HQ8A 5ARFA 4QEPA 2R3AA 3OXFA 3MEKA 3MO0A 4WUYA 5EX3A 3F9YA 2QPWA 5T0MA 5TTFA 2G46A 2W5ZA 4NVQA 3KMAA 3CBOA
chains in the Genus database with same CATH topology
3BO5A 3DB5A 4YNMA 5CCLA 1ZKKA 5EX0A 3DALA 3OS5A 3RIBA 5KJKA 4LDGA 5ARGA 5T0KA 1MUFA 4QENA 3FPDA 3F9ZA 4O6FA 4H12A 3RJWA 5JJ0A 5T5GA 5LSZA 4JDSA 3S7BA 3K5KA 4JLGA 4I51A 3M55A 3F9WA 2RFIA 4O30A 4RZ0A 3SW9A 4FMUA 4J7FA 4NJ5A 1N6AA 1PEGA 3PDNA 4YNPA 4Z4PA 2BQZA 3QWWA 4YPEA 5KJLA 5JINA 5HI7A 3N71A 5JIYA 3MO2A 4YNDA 4YPUA 3S7JA 5F6KC 3CBPA 2JV0A 3M54A 3F9XA 1H3IA 1N3JA 3M5AA 3TG5A 3EP0A 3IHXA 3M58A 1MVHA 4E47A 5F6LA 5TEGA 3M53A 3MO5A 5TH7A 4MI0A 1N6CA 5EG2A 5F5EA 3KMJA 4IJDA 3VV0A 4J83A 3M59A 1O9SA 4J7IA 3S8PA 5CPRB 3RQ4A 4QEOA 1XQHA 5CCMA 3M56A 1ML9A 3OPEA 3TG4A 3OOIA 3S7DA 4AU7A 3HNAA 3RAYA 5JHNA 3VUZA 4MI5A 2O8JA 3QWVA 3M57A 5AYFA 3CBMA 3QWPA 4BUPA 3S7FA 4YPAA 3RU0A 2F69A 1MT6A 5F59A 4J8OA 4C1QA 1MVXA 3OXLA 5LSXA 2IGQA 5KJMA 3SWCA 2W5YA 3KMTA 3OXGA 5KJNA 4IJ8A 5HQ8A 5ARFA 4QEPA 2R3AA 3OXFA 3MEKA 3MO0A 4WUYA 5EX3A 3F9YA 2QPWA 5T0MA 5TTFA 2G46A 2W5ZA 4NVQA 3KMAA 3CBOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BO5 A;  3DB5 A;  4YNM A;  5CCL A;  1ZKK A;  5EX0 A;  3DAL A;  3OS5 A;  3RIB A;  5KJK A;  4LDG A;  5ARG A;  5T0K A;  1MUF A;  4QEN A;  3FPD A;  3F9Z A;  4O6F A;  4H12 A;  3RJW A;  5JJ0 A;  5T5G A;  5LSZ A;  4JDS A;  3S7B A;  3K5K A;  4JLG A;  4I51 A;  3M55 A;  3F9W A;  2RFI A;  4O30 A;  4RZ0 A;  3SW9 A;  4FMU A;  4J7F A;  4NJ5 A;  1N6A A;  1PEG A;  3PDN A;  4YNP A;  4Z4P A;  2BQZ A;  3QWW A;  4YPE A;  5KJL A;  5JIN A;  5HI7 A;  3N71 A;  5JIY A;  3MO2 A;  4YND A;  4YPU A;  3S7J A;  5F6K C;  3CBP A;  2JV0 A;  3M54 A;  3F9X A;  1H3I A;  1N3J A;  3M5A A;  3TG5 A;  3EP0 A;  3IHX A;  3M58 A;  1MVH A;  4E47 A;  5F6L A;  5TEG A;  3M53 A;  3MO5 A;  5TH7 A;  4MI0 A;  1N6C A;  5EG2 A;  5F5E A;  3KMJ A;  4IJD A;  3VV0 A;  4J83 A;  3M59 A;  1O9S A;  4J7I A;  3S8P A;  5CPR B;  3RQ4 A;  4QEO A;  1XQH A;  5CCM A;  3M56 A;  1ML9 A;  3OPE A;  3TG4 A;  3OOI A;  3S7D A;  4AU7 A;  3HNA A;  3RAY A;  5JHN A;  3VUZ A;  4MI5 A;  2O8J A;  3QWV A;  3M57 A;  5AYF A;  3CBM A;  3QWP A;  4BUP A;  3S7F A;  4YPA A;  3RU0 A;  2F69 A;  1MT6 A;  5F59 A;  4J8O A;  4C1Q A;  1MVX A;  3OXL A;  5LSX A;  2IGQ A;  5KJM A;  3SWC A;  2W5Y A;  3KMT A;  3OXG A;  5KJN A;  4IJ8 A;  5HQ8 A;  5ARF A;  4QEP A;  2R3A A;  3OXF A;  3MEK A;  3MO0 A;  4WUY A;  5EX3 A;  3F9Y A;  2QPW A;  5T0M A;  5TTF A;  2G46 A;  2W5Z A;  4NVQ A;  3KMA A;  3CBO A; 
#chains in the Genus database with same CATH topology
 3BO5 A;  3DB5 A;  4YNM A;  5CCL A;  1ZKK A;  5EX0 A;  3DAL A;  3OS5 A;  3RIB A;  5KJK A;  4LDG A;  5ARG A;  5T0K A;  1MUF A;  4QEN A;  3FPD A;  3F9Z A;  4O6F A;  4H12 A;  3RJW A;  5JJ0 A;  5T5G A;  5LSZ A;  4JDS A;  3S7B A;  3K5K A;  4JLG A;  4I51 A;  3M55 A;  3F9W A;  2RFI A;  4O30 A;  4RZ0 A;  3SW9 A;  4FMU A;  4J7F A;  4NJ5 A;  1N6A A;  1PEG A;  3PDN A;  4YNP A;  4Z4P A;  2BQZ A;  3QWW A;  4YPE A;  5KJL A;  5JIN A;  5HI7 A;  3N71 A;  5JIY A;  3MO2 A;  4YND A;  4YPU A;  3S7J A;  5F6K C;  3CBP A;  2JV0 A;  3M54 A;  3F9X A;  1H3I A;  1N3J A;  3M5A A;  3TG5 A;  3EP0 A;  3IHX A;  3M58 A;  1MVH A;  4E47 A;  5F6L A;  5TEG A;  3M53 A;  3MO5 A;  5TH7 A;  4MI0 A;  1N6C A;  5EG2 A;  5F5E A;  3KMJ A;  4IJD A;  3VV0 A;  4J83 A;  3M59 A;  1O9S A;  4J7I A;  3S8P A;  5CPR B;  3RQ4 A;  4QEO A;  1XQH A;  5CCM A;  3M56 A;  1ML9 A;  3OPE A;  3TG4 A;  3OOI A;  3S7D A;  4AU7 A;  3HNA A;  3RAY A;  5JHN A;  3VUZ A;  4MI5 A;  2O8J A;  3QWV A;  3M57 A;  5AYF A;  3CBM A;  3QWP A;  4BUP A;  3S7F A;  4YPA A;  3RU0 A;  2F69 A;  1MT6 A;  5F59 A;  4J8O A;  4C1Q A;  1MVX A;  3OXL A;  5LSX A;  2IGQ A;  5KJM A;  3SWC A;  2W5Y A;  3KMT A;  3OXG A;  5KJN A;  4IJ8 A;  5HQ8 A;  5ARF A;  4QEP A;  2R3A A;  3OXF A;  3MEK A;  3MO0 A;  4WUY A;  5EX3 A;  3F9Y A;  2QPW A;  5T0M A;  5TTF A;  2G46 A;  2W5Z A;  4NVQ A;  3KMA A;  3CBO A; 
#chains in the Genus database with same CATH homology
 3BO5 A;  3DB5 A;  4YNM A;  5CCL A;  1ZKK A;  5EX0 A;  3DAL A;  3OS5 A;  3RIB A;  5KJK A;  4LDG A;  5ARG A;  5T0K A;  1MUF A;  4QEN A;  3FPD A;  3F9Z A;  4O6F A;  4H12 A;  3RJW A;  5JJ0 A;  5T5G A;  5LSZ A;  4JDS A;  3S7B A;  3K5K A;  4JLG A;  4I51 A;  3M55 A;  3F9W A;  2RFI A;  4O30 A;  4RZ0 A;  3SW9 A;  4FMU A;  4J7F A;  4NJ5 A;  1N6A A;  1PEG A;  3PDN A;  4YNP A;  4Z4P A;  2BQZ A;  3QWW A;  4YPE A;  5KJL A;  5JIN A;  5HI7 A;  3N71 A;  5JIY A;  3MO2 A;  4YND A;  4YPU A;  3S7J A;  5F6K C;  3CBP A;  2JV0 A;  3M54 A;  3F9X A;  1H3I A;  1N3J A;  3M5A A;  3TG5 A;  3EP0 A;  3IHX A;  3M58 A;  1MVH A;  4E47 A;  5F6L A;  5TEG A;  3M53 A;  3MO5 A;  5TH7 A;  4MI0 A;  1N6C A;  5EG2 A;  5F5E A;  3KMJ A;  4IJD A;  3VV0 A;  4J83 A;  3M59 A;  1O9S A;  4J7I A;  3S8P A;  5CPR B;  3RQ4 A;  4QEO A;  1XQH A;  5CCM A;  3M56 A;  1ML9 A;  3OPE A;  3TG4 A;  3OOI A;  3S7D A;  4AU7 A;  3HNA A;  3RAY A;  5JHN A;  3VUZ A;  4MI5 A;  2O8J A;  3QWV A;  3M57 A;  5AYF A;  3CBM A;  3QWP A;  4BUP A;  3S7F A;  4YPA A;  3RU0 A;  2F69 A;  1MT6 A;  5F59 A;  4J8O A;  4C1Q A;  1MVX A;  3OXL A;  5LSX A;  2IGQ A;  5KJM A;  3SWC A;  2W5Y A;  3KMT A;  3OXG A;  5KJN A;  4IJ8 A;  5HQ8 A;  5ARF A;  4QEP A;  2R3A A;  3OXF A;  3MEK A;  3MO0 A;  4WUY A;  5EX3 A;  3F9Y A;  2QPW A;  5T0M A;  5TTF A;  2G46 A;  2W5Z A;  4NVQ A;  3KMA A;  3CBO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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