1ML9A

Structure of the neurospora set domain protein dim-5, a histone lysine methyltransferase
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
284
structure length
260
Chain Sequence
QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNKISEMTKCLC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase
pubmed doi rcsb
source organism Neurospora crassa
molecule tags Transferase
molecule keywords Histone H3 methyltransferase DIM-5
total genus 63
structure length 260
sequence length 284
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2002-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 1ml9A00
3MO2A 5EX0A 4J7IA 4MI0A 3OXGA 5ARGA 5JJ0A 4WUYA 5F59A 1XQHA 2JV0A 5F6LA 3M53A 5JHNA 5CPRB 3F9XA 3S7BA 2RFIA 2O8JA 5F6KC 3F9YA 3HNAA 4RZ0A 3DB5A 5KJNA 3PDNA 3DALA 4JDSA 4IJDA 3OXLA 3S7JA 5LSZA 3MEKA 1N6CA 5EX3A 3TG5A 3RAYA 3RQ4A 3BO5A 4O30A 3OS5A 4QENA 3SW9A 2F69A 3FPDA 3M54A 3QWWA 4MI5A 1MVHA 3RJWA 5JINA 3RIBA 3MO0A 4E47A 5KJLA 3S7DA 4J83A 5T5GA 3N71A 5KJMA 5HI7A 5TTFA 2G46A 3F9ZA 1PEGA 5JIYA 4O6FA 5CCLA 3VUZA 2R3AA 4C1QA 1MT6A 3M59A 3M58A 3S8PA 5CCMA 1ZKKA 4YNDA 4JLGA 3EP0A 3KMAA 2QPWA 3CBMA 4IJ8A 2BQZA 3M5AA 3SWCA 3OOIA 4LDGA 1N3JA 3QWVA 4BUPA 5TEGA 1O9SA 2W5ZA 1H3IA 2W5YA 4QEPA 3RU0A 5ARFA 3TG4A 5T0KA 4AU7A 3OPEA 3F9WA 5TH7A 4QEOA 4YPEA 3M56A 5T0MA 4YNPA 5F5EA 3OXFA 4YPAA 5LSXA 3MO5A 1MUFA 3KMJA 4FMUA 4J7FA 3KMTA 3M57A 1MVXA 3QWPA 4I51A 3IHXA 4NJ5A 5HQ8A 2IGQA 1N6AA 4NVQA 5EG2A 5KJKA 3CBPA 4H12A 4Z4PA 4YPUA 3VV0A 4J8OA 3S7FA 1ML9A 3M55A 5AYFA 4YNMA 3K5KA 3CBOA
chains in the Genus database with same CATH superfamily
3MO2A 5EX0A 4J7IA 4MI0A 3OXGA 5ARGA 5JJ0A 4WUYA 5F59A 1XQHA 2JV0A 5F6LA 3M53A 5JHNA 5CPRB 3F9XA 3S7BA 2RFIA 2O8JA 5F6KC 3F9YA 3HNAA 4RZ0A 3DB5A 5KJNA 3PDNA 3DALA 4JDSA 4IJDA 3OXLA 3S7JA 5LSZA 3MEKA 1N6CA 5EX3A 3TG5A 3RAYA 3RQ4A 3BO5A 4O30A 3OS5A 4QENA 3SW9A 2F69A 3FPDA 3M54A 3QWWA 4MI5A 1MVHA 3RJWA 5JINA 3RIBA 3MO0A 4E47A 5KJLA 3S7DA 4J83A 5T5GA 3N71A 5KJMA 5HI7A 5TTFA 2G46A 3F9ZA 1PEGA 5JIYA 4O6FA 5CCLA 3VUZA 2R3AA 4C1QA 1MT6A 3M59A 3M58A 3S8PA 5CCMA 1ZKKA 4YNDA 4JLGA 3EP0A 3KMAA 2QPWA 3CBMA 4IJ8A 2BQZA 3M5AA 3SWCA 3OOIA 4LDGA 1N3JA 3QWVA 4BUPA 5TEGA 1O9SA 2W5ZA 1H3IA 2W5YA 4QEPA 3RU0A 5ARFA 3TG4A 5T0KA 4AU7A 3OPEA 3F9WA 5TH7A 4QEOA 4YPEA 3M56A 5T0MA 4YNPA 5F5EA 3OXFA 4YPAA 5LSXA 3MO5A 1MUFA 3KMJA 4FMUA 4J7FA 3KMTA 3M57A 1MVXA 3QWPA 4I51A 3IHXA 4NJ5A 5HQ8A 2IGQA 1N6AA 4NVQA 5EG2A 5KJKA 3CBPA 4H12A 4Z4PA 4YPUA 3VV0A 4J8OA 3S7FA 1ML9A 3M55A 5AYFA 4YNMA 3K5KA 3CBOA
chains in the Genus database with same CATH topology
3MO2A 5EX0A 4J7IA 4MI0A 3OXGA 5ARGA 5JJ0A 4WUYA 5F59A 1XQHA 2JV0A 5F6LA 3M53A 5JHNA 5CPRB 3F9XA 3S7BA 2RFIA 2O8JA 5F6KC 3F9YA 3HNAA 4RZ0A 3DB5A 5KJNA 3PDNA 3DALA 4JDSA 4IJDA 3OXLA 3S7JA 5LSZA 3MEKA 1N6CA 5EX3A 3TG5A 3RAYA 3RQ4A 3BO5A 4O30A 3OS5A 4QENA 3SW9A 2F69A 3FPDA 3M54A 3QWWA 4MI5A 1MVHA 3RJWA 5JINA 3RIBA 3MO0A 4E47A 5KJLA 3S7DA 4J83A 5T5GA 3N71A 5KJMA 5HI7A 5TTFA 2G46A 3F9ZA 1PEGA 5JIYA 4O6FA 5CCLA 3VUZA 2R3AA 4C1QA 1MT6A 3M59A 3M58A 3S8PA 5CCMA 1ZKKA 4YNDA 4JLGA 3EP0A 3KMAA 2QPWA 3CBMA 4IJ8A 2BQZA 3M5AA 3SWCA 3OOIA 4LDGA 1N3JA 3QWVA 4BUPA 5TEGA 1O9SA 2W5ZA 1H3IA 2W5YA 4QEPA 3RU0A 5ARFA 3TG4A 5T0KA 4AU7A 3OPEA 3F9WA 5TH7A 4QEOA 4YPEA 3M56A 5T0MA 4YNPA 5F5EA 3OXFA 4YPAA 5LSXA 3MO5A 1MUFA 3KMJA 4FMUA 4J7FA 3KMTA 3M57A 1MVXA 3QWPA 4I51A 3IHXA 4NJ5A 5HQ8A 2IGQA 1N6AA 4NVQA 5EG2A 5KJKA 3CBPA 4H12A 4Z4PA 4YPUA 3VV0A 4J8OA 3S7FA 1ML9A 3M55A 5AYFA 4YNMA 3K5KA 3CBOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MO2 A;  5EX0 A;  4J7I A;  4MI0 A;  3OXG A;  5ARG A;  5JJ0 A;  4WUY A;  5F59 A;  1XQH A;  2JV0 A;  5F6L A;  3M53 A;  5JHN A;  5CPR B;  3F9X A;  3S7B A;  2RFI A;  2O8J A;  5F6K C;  3F9Y A;  3HNA A;  4RZ0 A;  3DB5 A;  5KJN A;  3PDN A;  3DAL A;  4JDS A;  4IJD A;  3OXL A;  3S7J A;  5LSZ A;  3MEK A;  1N6C A;  5EX3 A;  3TG5 A;  3RAY A;  3RQ4 A;  3BO5 A;  4O30 A;  3OS5 A;  4QEN A;  3SW9 A;  2F69 A;  3FPD A;  3M54 A;  3QWW A;  4MI5 A;  1MVH A;  3RJW A;  5JIN A;  3RIB A;  3MO0 A;  4E47 A;  5KJL A;  3S7D A;  4J83 A;  5T5G A;  3N71 A;  5KJM A;  5HI7 A;  5TTF A;  2G46 A;  3F9Z A;  1PEG A;  5JIY A;  4O6F A;  5CCL A;  3VUZ A;  2R3A A;  4C1Q A;  1MT6 A;  3M59 A;  3M58 A;  3S8P A;  5CCM A;  1ZKK A;  4YND A;  4JLG A;  3EP0 A;  3KMA A;  2QPW A;  3CBM A;  4IJ8 A;  2BQZ A;  3M5A A;  3SWC A;  3OOI A;  4LDG A;  1N3J A;  3QWV A;  4BUP A;  5TEG A;  1O9S A;  2W5Z A;  1H3I A;  2W5Y A;  4QEP A;  3RU0 A;  5ARF A;  3TG4 A;  5T0K A;  4AU7 A;  3OPE A;  3F9W A;  5TH7 A;  4QEO A;  4YPE A;  3M56 A;  5T0M A;  4YNP A;  5F5E A;  3OXF A;  4YPA A;  5LSX A;  3MO5 A;  1MUF A;  3KMJ A;  4FMU A;  4J7F A;  3KMT A;  3M57 A;  1MVX A;  3QWP A;  4I51 A;  3IHX A;  4NJ5 A;  5HQ8 A;  2IGQ A;  1N6A A;  4NVQ A;  5EG2 A;  5KJK A;  3CBP A;  4H12 A;  4Z4P A;  4YPU A;  3VV0 A;  4J8O A;  3S7F A;  1ML9 A;  3M55 A;  5AYF A;  4YNM A;  3K5K A;  3CBO A; 
#chains in the Genus database with same CATH topology
 3MO2 A;  5EX0 A;  4J7I A;  4MI0 A;  3OXG A;  5ARG A;  5JJ0 A;  4WUY A;  5F59 A;  1XQH A;  2JV0 A;  5F6L A;  3M53 A;  5JHN A;  5CPR B;  3F9X A;  3S7B A;  2RFI A;  2O8J A;  5F6K C;  3F9Y A;  3HNA A;  4RZ0 A;  3DB5 A;  5KJN A;  3PDN A;  3DAL A;  4JDS A;  4IJD A;  3OXL A;  3S7J A;  5LSZ A;  3MEK A;  1N6C A;  5EX3 A;  3TG5 A;  3RAY A;  3RQ4 A;  3BO5 A;  4O30 A;  3OS5 A;  4QEN A;  3SW9 A;  2F69 A;  3FPD A;  3M54 A;  3QWW A;  4MI5 A;  1MVH A;  3RJW A;  5JIN A;  3RIB A;  3MO0 A;  4E47 A;  5KJL A;  3S7D A;  4J83 A;  5T5G A;  3N71 A;  5KJM A;  5HI7 A;  5TTF A;  2G46 A;  3F9Z A;  1PEG A;  5JIY A;  4O6F A;  5CCL A;  3VUZ A;  2R3A A;  4C1Q A;  1MT6 A;  3M59 A;  3M58 A;  3S8P A;  5CCM A;  1ZKK A;  4YND A;  4JLG A;  3EP0 A;  3KMA A;  2QPW A;  3CBM A;  4IJ8 A;  2BQZ A;  3M5A A;  3SWC A;  3OOI A;  4LDG A;  1N3J A;  3QWV A;  4BUP A;  5TEG A;  1O9S A;  2W5Z A;  1H3I A;  2W5Y A;  4QEP A;  3RU0 A;  5ARF A;  3TG4 A;  5T0K A;  4AU7 A;  3OPE A;  3F9W A;  5TH7 A;  4QEO A;  4YPE A;  3M56 A;  5T0M A;  4YNP A;  5F5E A;  3OXF A;  4YPA A;  5LSX A;  3MO5 A;  1MUF A;  3KMJ A;  4FMU A;  4J7F A;  3KMT A;  3M57 A;  1MVX A;  3QWP A;  4I51 A;  3IHX A;  4NJ5 A;  5HQ8 A;  2IGQ A;  1N6A A;  4NVQ A;  5EG2 A;  5KJK A;  3CBP A;  4H12 A;  4Z4P A;  4YPU A;  3VV0 A;  4J8O A;  3S7F A;  1ML9 A;  3M55 A;  5AYF A;  4YNM A;  3K5K A;  3CBO A; 
#chains in the Genus database with same CATH homology
 3MO2 A;  5EX0 A;  4J7I A;  4MI0 A;  3OXG A;  5ARG A;  5JJ0 A;  4WUY A;  5F59 A;  1XQH A;  2JV0 A;  5F6L A;  3M53 A;  5JHN A;  5CPR B;  3F9X A;  3S7B A;  2RFI A;  2O8J A;  5F6K C;  3F9Y A;  3HNA A;  4RZ0 A;  3DB5 A;  5KJN A;  3PDN A;  3DAL A;  4JDS A;  4IJD A;  3OXL A;  3S7J A;  5LSZ A;  3MEK A;  1N6C A;  5EX3 A;  3TG5 A;  3RAY A;  3RQ4 A;  3BO5 A;  4O30 A;  3OS5 A;  4QEN A;  3SW9 A;  2F69 A;  3FPD A;  3M54 A;  3QWW A;  4MI5 A;  1MVH A;  3RJW A;  5JIN A;  3RIB A;  3MO0 A;  4E47 A;  5KJL A;  3S7D A;  4J83 A;  5T5G A;  3N71 A;  5KJM A;  5HI7 A;  5TTF A;  2G46 A;  3F9Z A;  1PEG A;  5JIY A;  4O6F A;  5CCL A;  3VUZ A;  2R3A A;  4C1Q A;  1MT6 A;  3M59 A;  3M58 A;  3S8P A;  5CCM A;  1ZKK A;  4YND A;  4JLG A;  3EP0 A;  3KMA A;  2QPW A;  3CBM A;  4IJ8 A;  2BQZ A;  3M5A A;  3SWC A;  3OOI A;  4LDG A;  1N3J A;  3QWV A;  4BUP A;  5TEG A;  1O9S A;  2W5Z A;  1H3I A;  2W5Y A;  4QEP A;  3RU0 A;  5ARF A;  3TG4 A;  5T0K A;  4AU7 A;  3OPE A;  3F9W A;  5TH7 A;  4QEO A;  4YPE A;  3M56 A;  5T0M A;  4YNP A;  5F5E A;  3OXF A;  4YPA A;  5LSX A;  3MO5 A;  1MUF A;  3KMJ A;  4FMU A;  4J7F A;  3KMT A;  3M57 A;  1MVX A;  3QWP A;  4I51 A;  3IHX A;  4NJ5 A;  5HQ8 A;  2IGQ A;  1N6A A;  4NVQ A;  5EG2 A;  5KJK A;  3CBP A;  4H12 A;  4Z4P A;  4YPU A;  3VV0 A;  4J8O A;  3S7F A;  1ML9 A;  3M55 A;  5AYF A;  4YNM A;  3K5K A;  3CBO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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