3SWCA

Glp (g9a-like protein) set domain in complex with dnmt3ak44me2 peptide
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
261
structure length
261
Chain Sequence
b'VERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Histone-lysine N-methyltransferase EHMT1
molecule tags Transferase
source organism Homo sapiens
publication title MPP8 mediates the interactions between DNA methyltransferase Dnmt3a and H3K9 methyltransferase GLP/G9a.
pubmed doi rcsb
total genus 69
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2011-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 3swcA00
4NJ5A 1ZKKA 3SW9A 3M54A 4IJDA 4O6FA 3F9XA 3M53A 5JJ0A 3VUZA 5KJKA 5CCMA 3OS5A 3PDNA 4RZ0A 3F9ZA 4YNPA 4H12A 3TG4A 3S7DA 4MI0A 5T0MA 4IJ8A 3MO2A 1MUFA 5F6KC 4Z4PA 1H3IA 5KJLA 5CCLA 3OOIA 3F9YA 4BUPA 5TTFA 4J7FA 3OXFA 3QWPA 1ML9A 3CBMA 5AYFA 4JLGA 3M57A 5EG2A 5HQ8A 5T5GA 4I51A 2IGQA 5HI7A 2BQZA 4J7IA 5T0KA 3IHXA 4QENA 4QEOA 1N6CA 5KJMA 2W5ZA 4MI5A 3OXLA 3KMAA 4J83A 3MO0A 5F6LA 3OPEA 3KMJA 4FMUA 3HNAA 3DB5A 3M56A 3N71A 5JINA 1MVHA 4WUYA 4YNMA 2F69A 4YNDA 5EX3A 3BO5A 2JV0A 4QEPA 5ARFA 3FPDA 3M58A 3S7BA 3RU0A 5JHNA 1O9SA 4YPUA 3RIBA 3MO5A 3RJWA 1N6AA 1MT6A 3F9WA 5F59A 5TEGA 5LSZA 2W5YA 4J8OA 4E47A 3S7JA 5EX0A 5TH7A 3VV0A 2QPWA 3K5KA 3DALA 4AU7A 3S7FA 3OXGA 1XQHA 3M5AA 2G46A 5LSXA 2O8JA 4O30A 4LDGA 5CPRB 3M59A 3EP0A 4NVQA 5JIYA 2R3AA 3CBOA 4YPAA 3MEKA 3M55A 3SWCA 4JDSA 1MVXA 5KJNA 3TG5A 3RAYA 2RFIA 3QWWA 4YPEA 5ARGA 3S8PA 3QWVA 3CBPA 5F5EA 3RQ4A 4C1QA 3KMTA 1PEGA 1N3JA
chains in the Genus database with same CATH superfamily
4NJ5A 1ZKKA 3SW9A 3M54A 4IJDA 4O6FA 3F9XA 3M53A 5JJ0A 3VUZA 5KJKA 5CCMA 3OS5A 3PDNA 4RZ0A 3F9ZA 4YNPA 4H12A 3TG4A 3S7DA 4MI0A 5T0MA 4IJ8A 3MO2A 1MUFA 5F6KC 4Z4PA 1H3IA 5KJLA 5CCLA 3OOIA 3F9YA 4BUPA 5TTFA 4J7FA 3OXFA 3QWPA 1ML9A 3CBMA 5AYFA 4JLGA 3M57A 5EG2A 5HQ8A 5T5GA 4I51A 2IGQA 5HI7A 2BQZA 4J7IA 5T0KA 3IHXA 4QENA 4QEOA 1N6CA 5KJMA 2W5ZA 4MI5A 3OXLA 3KMAA 4J83A 3MO0A 5F6LA 3OPEA 3KMJA 4FMUA 3HNAA 3DB5A 3M56A 3N71A 5JINA 1MVHA 4WUYA 4YNMA 2F69A 4YNDA 5EX3A 3BO5A 2JV0A 4QEPA 5ARFA 3FPDA 3M58A 3S7BA 3RU0A 5JHNA 1O9SA 4YPUA 3RIBA 3MO5A 3RJWA 1N6AA 1MT6A 3F9WA 5F59A 5TEGA 5LSZA 2W5YA 4J8OA 4E47A 3S7JA 5EX0A 5TH7A 3VV0A 2QPWA 3K5KA 3DALA 4AU7A 3S7FA 3OXGA 1XQHA 3M5AA 2G46A 5LSXA 2O8JA 4O30A 4LDGA 5CPRB 3M59A 3EP0A 4NVQA 5JIYA 2R3AA 3CBOA 4YPAA 3MEKA 3M55A 3SWCA 4JDSA 1MVXA 5KJNA 3TG5A 3RAYA 2RFIA 3QWWA 4YPEA 5ARGA 3S8PA 3QWVA 3CBPA 5F5EA 3RQ4A 4C1QA 3KMTA 1PEGA 1N3JA
chains in the Genus database with same CATH topology
4NJ5A 1ZKKA 3SW9A 3M54A 4IJDA 4O6FA 3F9XA 3M53A 5JJ0A 3VUZA 5KJKA 5CCMA 3OS5A 3PDNA 4RZ0A 3F9ZA 4YNPA 4H12A 3TG4A 3S7DA 4MI0A 5T0MA 4IJ8A 3MO2A 1MUFA 5F6KC 4Z4PA 1H3IA 5KJLA 5CCLA 3OOIA 3F9YA 4BUPA 5TTFA 4J7FA 3OXFA 3QWPA 1ML9A 3CBMA 5AYFA 4JLGA 3M57A 5EG2A 5HQ8A 5T5GA 4I51A 2IGQA 5HI7A 2BQZA 4J7IA 5T0KA 3IHXA 4QENA 4QEOA 1N6CA 5KJMA 2W5ZA 4MI5A 3OXLA 3KMAA 4J83A 3MO0A 5F6LA 3OPEA 3KMJA 4FMUA 3HNAA 3DB5A 3M56A 3N71A 5JINA 1MVHA 4WUYA 4YNMA 2F69A 4YNDA 5EX3A 3BO5A 2JV0A 4QEPA 5ARFA 3FPDA 3M58A 3S7BA 3RU0A 5JHNA 1O9SA 4YPUA 3RIBA 3MO5A 3RJWA 1N6AA 1MT6A 3F9WA 5F59A 5TEGA 5LSZA 2W5YA 4J8OA 4E47A 3S7JA 5EX0A 5TH7A 3VV0A 2QPWA 3K5KA 3DALA 4AU7A 3S7FA 3OXGA 1XQHA 3M5AA 2G46A 5LSXA 2O8JA 4O30A 4LDGA 5CPRB 3M59A 3EP0A 4NVQA 5JIYA 2R3AA 3CBOA 4YPAA 3MEKA 3M55A 3SWCA 4JDSA 1MVXA 5KJNA 3TG5A 3RAYA 2RFIA 3QWWA 4YPEA 5ARGA 3S8PA 3QWVA 3CBPA 5F5EA 3RQ4A 4C1QA 3KMTA 1PEGA 1N3JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NJ5 A;  1ZKK A;  3SW9 A;  3M54 A;  4IJD A;  4O6F A;  3F9X A;  3M53 A;  5JJ0 A;  3VUZ A;  5KJK A;  5CCM A;  3OS5 A;  3PDN A;  4RZ0 A;  3F9Z A;  4YNP A;  4H12 A;  3TG4 A;  3S7D A;  4MI0 A;  5T0M A;  4IJ8 A;  3MO2 A;  1MUF A;  5F6K C;  4Z4P A;  1H3I A;  5KJL A;  5CCL A;  3OOI A;  3F9Y A;  4BUP A;  5TTF A;  4J7F A;  3OXF A;  3QWP A;  1ML9 A;  3CBM A;  5AYF A;  4JLG A;  3M57 A;  5EG2 A;  5HQ8 A;  5T5G A;  4I51 A;  2IGQ A;  5HI7 A;  2BQZ A;  4J7I A;  5T0K A;  3IHX A;  4QEN A;  4QEO A;  1N6C A;  5KJM A;  2W5Z A;  4MI5 A;  3OXL A;  3KMA A;  4J83 A;  3MO0 A;  5F6L A;  3OPE A;  3KMJ A;  4FMU A;  3HNA A;  3DB5 A;  3M56 A;  3N71 A;  5JIN A;  1MVH A;  4WUY A;  4YNM A;  2F69 A;  4YND A;  5EX3 A;  3BO5 A;  2JV0 A;  4QEP A;  5ARF A;  3FPD A;  3M58 A;  3S7B A;  3RU0 A;  5JHN A;  1O9S A;  4YPU A;  3RIB A;  3MO5 A;  3RJW A;  1N6A A;  1MT6 A;  3F9W A;  5F59 A;  5TEG A;  5LSZ A;  2W5Y A;  4J8O A;  4E47 A;  3S7J A;  5EX0 A;  5TH7 A;  3VV0 A;  2QPW A;  3K5K A;  3DAL A;  4AU7 A;  3S7F A;  3OXG A;  1XQH A;  3M5A A;  2G46 A;  5LSX A;  2O8J A;  4O30 A;  4LDG A;  5CPR B;  3M59 A;  3EP0 A;  4NVQ A;  5JIY A;  2R3A A;  3CBO A;  4YPA A;  3MEK A;  3M55 A;  3SWC A;  4JDS A;  1MVX A;  5KJN A;  3TG5 A;  3RAY A;  2RFI A;  3QWW A;  4YPE A;  5ARG A;  3S8P A;  3QWV A;  3CBP A;  5F5E A;  3RQ4 A;  4C1Q A;  3KMT A;  1PEG A;  1N3J A; 
#chains in the Genus database with same CATH topology
 4NJ5 A;  1ZKK A;  3SW9 A;  3M54 A;  4IJD A;  4O6F A;  3F9X A;  3M53 A;  5JJ0 A;  3VUZ A;  5KJK A;  5CCM A;  3OS5 A;  3PDN A;  4RZ0 A;  3F9Z A;  4YNP A;  4H12 A;  3TG4 A;  3S7D A;  4MI0 A;  5T0M A;  4IJ8 A;  3MO2 A;  1MUF A;  5F6K C;  4Z4P A;  1H3I A;  5KJL A;  5CCL A;  3OOI A;  3F9Y A;  4BUP A;  5TTF A;  4J7F A;  3OXF A;  3QWP A;  1ML9 A;  3CBM A;  5AYF A;  4JLG A;  3M57 A;  5EG2 A;  5HQ8 A;  5T5G A;  4I51 A;  2IGQ A;  5HI7 A;  2BQZ A;  4J7I A;  5T0K A;  3IHX A;  4QEN A;  4QEO A;  1N6C A;  5KJM A;  2W5Z A;  4MI5 A;  3OXL A;  3KMA A;  4J83 A;  3MO0 A;  5F6L A;  3OPE A;  3KMJ A;  4FMU A;  3HNA A;  3DB5 A;  3M56 A;  3N71 A;  5JIN A;  1MVH A;  4WUY A;  4YNM A;  2F69 A;  4YND A;  5EX3 A;  3BO5 A;  2JV0 A;  4QEP A;  5ARF A;  3FPD A;  3M58 A;  3S7B A;  3RU0 A;  5JHN A;  1O9S A;  4YPU A;  3RIB A;  3MO5 A;  3RJW A;  1N6A A;  1MT6 A;  3F9W A;  5F59 A;  5TEG A;  5LSZ A;  2W5Y A;  4J8O A;  4E47 A;  3S7J A;  5EX0 A;  5TH7 A;  3VV0 A;  2QPW A;  3K5K A;  3DAL A;  4AU7 A;  3S7F A;  3OXG A;  1XQH A;  3M5A A;  2G46 A;  5LSX A;  2O8J A;  4O30 A;  4LDG A;  5CPR B;  3M59 A;  3EP0 A;  4NVQ A;  5JIY A;  2R3A A;  3CBO A;  4YPA A;  3MEK A;  3M55 A;  3SWC A;  4JDS A;  1MVX A;  5KJN A;  3TG5 A;  3RAY A;  2RFI A;  3QWW A;  4YPE A;  5ARG A;  3S8P A;  3QWV A;  3CBP A;  5F5E A;  3RQ4 A;  4C1Q A;  3KMT A;  1PEG A;  1N3J A; 
#chains in the Genus database with same CATH homology
 4NJ5 A;  1ZKK A;  3SW9 A;  3M54 A;  4IJD A;  4O6F A;  3F9X A;  3M53 A;  5JJ0 A;  3VUZ A;  5KJK A;  5CCM A;  3OS5 A;  3PDN A;  4RZ0 A;  3F9Z A;  4YNP A;  4H12 A;  3TG4 A;  3S7D A;  4MI0 A;  5T0M A;  4IJ8 A;  3MO2 A;  1MUF A;  5F6K C;  4Z4P A;  1H3I A;  5KJL A;  5CCL A;  3OOI A;  3F9Y A;  4BUP A;  5TTF A;  4J7F A;  3OXF A;  3QWP A;  1ML9 A;  3CBM A;  5AYF A;  4JLG A;  3M57 A;  5EG2 A;  5HQ8 A;  5T5G A;  4I51 A;  2IGQ A;  5HI7 A;  2BQZ A;  4J7I A;  5T0K A;  3IHX A;  4QEN A;  4QEO A;  1N6C A;  5KJM A;  2W5Z A;  4MI5 A;  3OXL A;  3KMA A;  4J83 A;  3MO0 A;  5F6L A;  3OPE A;  3KMJ A;  4FMU A;  3HNA A;  3DB5 A;  3M56 A;  3N71 A;  5JIN A;  1MVH A;  4WUY A;  4YNM A;  2F69 A;  4YND A;  5EX3 A;  3BO5 A;  2JV0 A;  4QEP A;  5ARF A;  3FPD A;  3M58 A;  3S7B A;  3RU0 A;  5JHN A;  1O9S A;  4YPU A;  3RIB A;  3MO5 A;  3RJW A;  1N6A A;  1MT6 A;  3F9W A;  5F59 A;  5TEG A;  5LSZ A;  2W5Y A;  4J8O A;  4E47 A;  3S7J A;  5EX0 A;  5TH7 A;  3VV0 A;  2QPW A;  3K5K A;  3DAL A;  4AU7 A;  3S7F A;  3OXG A;  1XQH A;  3M5A A;  2G46 A;  5LSX A;  2O8J A;  4O30 A;  4LDG A;  5CPR B;  3M59 A;  3EP0 A;  4NVQ A;  5JIY A;  2R3A A;  3CBO A;  4YPA A;  3MEK A;  3M55 A;  3SWC A;  4JDS A;  1MVX A;  5KJN A;  3TG5 A;  3RAY A;  2RFI A;  3QWW A;  4YPE A;  5ARG A;  3S8P A;  3QWV A;  3CBP A;  5F5E A;  3RQ4 A;  4C1Q A;  3KMT A;  1PEG A;  1N3J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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