1N3JA

Structure and substrate of a histone h3 lysine methyltransferase from paramecium bursaria chlorella virus 1
Total Genus 8
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
119
structure length
119
Chain Sequence
MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Histone H3 Lysine Methyltransferase
publication title A dimeric viral SET domain methyltransferase specific to Lys27 of histone H3.
pubmed doi rcsb
source organism Paramecium bursaria chlorella virus 1
total genus 8
structure length 119
sequence length 119
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 1n3jA00
3MEKA 3SWCA 4NJ5A 5JINA 2QPWA 3M54A 4YPAA 4NVQA 1MUFA 5KJMA 3OS5A 3RU0A 3KMAA 5F6LA 2R3AA 3M53A 3TG5A 1ML9A 2JV0A 3F9ZA 4WUYA 4JLGA 2O8JA 4FMUA 1O9SA 3DB5A 3OOIA 3S7FA 5HI7A 4RZ0A 4YPUA 3S7BA 3RIBA 3F9YA 3TG4A 4YNPA 1PEGA 2G46A 4QEPA 3M55A 3S7DA 3OPEA 5LSXA 2RFIA 3HNAA 4O30A 4IJ8A 3F9WA 3CBOA 5KJLA 1N6AA 3M58A 5TEGA 5EG2A 3M57A 3FPDA 3OXLA 3BO5A 5ARGA 4H12A 5HQ8A 4MI5A 4LDGA 5T0KA 3S8PA 3QWPA 4J8OA 3M59A 1MVHA 5EX0A 3MO2A 3M56A 3DALA 5TTFA 3K5KA 5CCLA 5T0MA 5AYFA 5CPRB 1N3JA 4J83A 2BQZA 3KMJA 3OXGA 5KJKA 2W5ZA 3RAYA 2W5YA 4IJDA 4J7IA 3S7JA 3CBPA 3CBMA 2F69A 2IGQA 4QEOA 4MI0A 4AU7A 3F9XA 1XQHA 4BUPA 1MVXA 5T5GA 4JDSA 1H3IA 5CCMA 3IHXA 4I51A 3QWVA 3VUZA 5EX3A 3RJWA 1MT6A 3VV0A 5F5EA 4YNMA 3MO0A 5F6KC 3QWWA 4YPEA 3N71A 5F59A 3SW9A 3EP0A 5JJ0A 3PDNA 4Z4PA 3RQ4A 5JIYA 4J7FA 4E47A 3OXFA 1N6CA 5TH7A 3KMTA 3MO5A 5LSZA 1ZKKA 4C1QA 4QENA 5KJNA 5ARFA 5JHNA 4YNDA 4O6FA 3M5AA
chains in the Genus database with same CATH superfamily
3MEKA 3SWCA 4NJ5A 5JINA 2QPWA 3M54A 4YPAA 4NVQA 1MUFA 5KJMA 3OS5A 3RU0A 3KMAA 5F6LA 2R3AA 3M53A 3TG5A 1ML9A 2JV0A 3F9ZA 4WUYA 4JLGA 2O8JA 4FMUA 1O9SA 3DB5A 3OOIA 3S7FA 5HI7A 4RZ0A 4YPUA 3S7BA 3RIBA 3F9YA 3TG4A 4YNPA 1PEGA 2G46A 4QEPA 3M55A 3S7DA 3OPEA 5LSXA 2RFIA 3HNAA 4O30A 4IJ8A 3F9WA 3CBOA 5KJLA 1N6AA 3M58A 5TEGA 5EG2A 3M57A 3FPDA 3OXLA 3BO5A 5ARGA 4H12A 5HQ8A 4MI5A 4LDGA 5T0KA 3S8PA 3QWPA 4J8OA 3M59A 1MVHA 5EX0A 3MO2A 3M56A 3DALA 5TTFA 3K5KA 5CCLA 5T0MA 5AYFA 5CPRB 1N3JA 4J83A 2BQZA 3KMJA 3OXGA 5KJKA 2W5ZA 3RAYA 2W5YA 4IJDA 4J7IA 3S7JA 3CBPA 3CBMA 2F69A 2IGQA 4QEOA 4MI0A 4AU7A 3F9XA 1XQHA 4BUPA 1MVXA 5T5GA 4JDSA 1H3IA 5CCMA 3IHXA 4I51A 3QWVA 3VUZA 5EX3A 3RJWA 1MT6A 3VV0A 5F5EA 4YNMA 3MO0A 5F6KC 3QWWA 4YPEA 3N71A 5F59A 3SW9A 3EP0A 5JJ0A 3PDNA 4Z4PA 3RQ4A 5JIYA 4J7FA 4E47A 3OXFA 1N6CA 5TH7A 3KMTA 3MO5A 5LSZA 1ZKKA 4C1QA 4QENA 5KJNA 5ARFA 5JHNA 4YNDA 4O6FA 3M5AA
chains in the Genus database with same CATH topology
3MEKA 3SWCA 4NJ5A 5JINA 2QPWA 3M54A 4YPAA 4NVQA 1MUFA 5KJMA 3OS5A 3RU0A 3KMAA 5F6LA 2R3AA 3M53A 3TG5A 1ML9A 2JV0A 3F9ZA 4WUYA 4JLGA 2O8JA 4FMUA 1O9SA 3DB5A 3OOIA 3S7FA 5HI7A 4RZ0A 4YPUA 3S7BA 3RIBA 3F9YA 3TG4A 4YNPA 1PEGA 2G46A 4QEPA 3M55A 3S7DA 3OPEA 5LSXA 2RFIA 3HNAA 4O30A 4IJ8A 3F9WA 3CBOA 5KJLA 1N6AA 3M58A 5TEGA 5EG2A 3M57A 3FPDA 3OXLA 3BO5A 5ARGA 4H12A 5HQ8A 4MI5A 4LDGA 5T0KA 3S8PA 3QWPA 4J8OA 3M59A 1MVHA 5EX0A 3MO2A 3M56A 3DALA 5TTFA 3K5KA 5CCLA 5T0MA 5AYFA 5CPRB 1N3JA 4J83A 2BQZA 3KMJA 3OXGA 5KJKA 2W5ZA 3RAYA 2W5YA 4IJDA 4J7IA 3S7JA 3CBPA 3CBMA 2F69A 2IGQA 4QEOA 4MI0A 4AU7A 3F9XA 1XQHA 4BUPA 1MVXA 5T5GA 4JDSA 1H3IA 5CCMA 3IHXA 4I51A 3QWVA 3VUZA 5EX3A 3RJWA 1MT6A 3VV0A 5F5EA 4YNMA 3MO0A 5F6KC 3QWWA 4YPEA 3N71A 5F59A 3SW9A 3EP0A 5JJ0A 3PDNA 4Z4PA 3RQ4A 5JIYA 4J7FA 4E47A 3OXFA 1N6CA 5TH7A 3KMTA 3MO5A 5LSZA 1ZKKA 4C1QA 4QENA 5KJNA 5ARFA 5JHNA 4YNDA 4O6FA 3M5AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MEK A;  3SWC A;  4NJ5 A;  5JIN A;  2QPW A;  3M54 A;  4YPA A;  4NVQ A;  1MUF A;  5KJM A;  3OS5 A;  3RU0 A;  3KMA A;  5F6L A;  2R3A A;  3M53 A;  3TG5 A;  1ML9 A;  2JV0 A;  3F9Z A;  4WUY A;  4JLG A;  2O8J A;  4FMU A;  1O9S A;  3DB5 A;  3OOI A;  3S7F A;  5HI7 A;  4RZ0 A;  4YPU A;  3S7B A;  3RIB A;  3F9Y A;  3TG4 A;  4YNP A;  1PEG A;  2G46 A;  4QEP A;  3M55 A;  3S7D A;  3OPE A;  5LSX A;  2RFI A;  3HNA A;  4O30 A;  4IJ8 A;  3F9W A;  3CBO A;  5KJL A;  1N6A A;  3M58 A;  5TEG A;  5EG2 A;  3M57 A;  3FPD A;  3OXL A;  3BO5 A;  5ARG A;  4H12 A;  5HQ8 A;  4MI5 A;  4LDG A;  5T0K A;  3S8P A;  3QWP A;  4J8O A;  3M59 A;  1MVH A;  5EX0 A;  3MO2 A;  3M56 A;  3DAL A;  5TTF A;  3K5K A;  5CCL A;  5T0M A;  5AYF A;  5CPR B;  1N3J A;  4J83 A;  2BQZ A;  3KMJ A;  3OXG A;  5KJK A;  2W5Z A;  3RAY A;  2W5Y A;  4IJD A;  4J7I A;  3S7J A;  3CBP A;  3CBM A;  2F69 A;  2IGQ A;  4QEO A;  4MI0 A;  4AU7 A;  3F9X A;  1XQH A;  4BUP A;  1MVX A;  5T5G A;  4JDS A;  1H3I A;  5CCM A;  3IHX A;  4I51 A;  3QWV A;  3VUZ A;  5EX3 A;  3RJW A;  1MT6 A;  3VV0 A;  5F5E A;  4YNM A;  3MO0 A;  5F6K C;  3QWW A;  4YPE A;  3N71 A;  5F59 A;  3SW9 A;  3EP0 A;  5JJ0 A;  3PDN A;  4Z4P A;  3RQ4 A;  5JIY A;  4J7F A;  4E47 A;  3OXF A;  1N6C A;  5TH7 A;  3KMT A;  3MO5 A;  5LSZ A;  1ZKK A;  4C1Q A;  4QEN A;  5KJN A;  5ARF A;  5JHN A;  4YND A;  4O6F A;  3M5A A; 
#chains in the Genus database with same CATH topology
 3MEK A;  3SWC A;  4NJ5 A;  5JIN A;  2QPW A;  3M54 A;  4YPA A;  4NVQ A;  1MUF A;  5KJM A;  3OS5 A;  3RU0 A;  3KMA A;  5F6L A;  2R3A A;  3M53 A;  3TG5 A;  1ML9 A;  2JV0 A;  3F9Z A;  4WUY A;  4JLG A;  2O8J A;  4FMU A;  1O9S A;  3DB5 A;  3OOI A;  3S7F A;  5HI7 A;  4RZ0 A;  4YPU A;  3S7B A;  3RIB A;  3F9Y A;  3TG4 A;  4YNP A;  1PEG A;  2G46 A;  4QEP A;  3M55 A;  3S7D A;  3OPE A;  5LSX A;  2RFI A;  3HNA A;  4O30 A;  4IJ8 A;  3F9W A;  3CBO A;  5KJL A;  1N6A A;  3M58 A;  5TEG A;  5EG2 A;  3M57 A;  3FPD A;  3OXL A;  3BO5 A;  5ARG A;  4H12 A;  5HQ8 A;  4MI5 A;  4LDG A;  5T0K A;  3S8P A;  3QWP A;  4J8O A;  3M59 A;  1MVH A;  5EX0 A;  3MO2 A;  3M56 A;  3DAL A;  5TTF A;  3K5K A;  5CCL A;  5T0M A;  5AYF A;  5CPR B;  1N3J A;  4J83 A;  2BQZ A;  3KMJ A;  3OXG A;  5KJK A;  2W5Z A;  3RAY A;  2W5Y A;  4IJD A;  4J7I A;  3S7J A;  3CBP A;  3CBM A;  2F69 A;  2IGQ A;  4QEO A;  4MI0 A;  4AU7 A;  3F9X A;  1XQH A;  4BUP A;  1MVX A;  5T5G A;  4JDS A;  1H3I A;  5CCM A;  3IHX A;  4I51 A;  3QWV A;  3VUZ A;  5EX3 A;  3RJW A;  1MT6 A;  3VV0 A;  5F5E A;  4YNM A;  3MO0 A;  5F6K C;  3QWW A;  4YPE A;  3N71 A;  5F59 A;  3SW9 A;  3EP0 A;  5JJ0 A;  3PDN A;  4Z4P A;  3RQ4 A;  5JIY A;  4J7F A;  4E47 A;  3OXF A;  1N6C A;  5TH7 A;  3KMT A;  3MO5 A;  5LSZ A;  1ZKK A;  4C1Q A;  4QEN A;  5KJN A;  5ARF A;  5JHN A;  4YND A;  4O6F A;  3M5A A; 
#chains in the Genus database with same CATH homology
 3MEK A;  3SWC A;  4NJ5 A;  5JIN A;  2QPW A;  3M54 A;  4YPA A;  4NVQ A;  1MUF A;  5KJM A;  3OS5 A;  3RU0 A;  3KMA A;  5F6L A;  2R3A A;  3M53 A;  3TG5 A;  1ML9 A;  2JV0 A;  3F9Z A;  4WUY A;  4JLG A;  2O8J A;  4FMU A;  1O9S A;  3DB5 A;  3OOI A;  3S7F A;  5HI7 A;  4RZ0 A;  4YPU A;  3S7B A;  3RIB A;  3F9Y A;  3TG4 A;  4YNP A;  1PEG A;  2G46 A;  4QEP A;  3M55 A;  3S7D A;  3OPE A;  5LSX A;  2RFI A;  3HNA A;  4O30 A;  4IJ8 A;  3F9W A;  3CBO A;  5KJL A;  1N6A A;  3M58 A;  5TEG A;  5EG2 A;  3M57 A;  3FPD A;  3OXL A;  3BO5 A;  5ARG A;  4H12 A;  5HQ8 A;  4MI5 A;  4LDG A;  5T0K A;  3S8P A;  3QWP A;  4J8O A;  3M59 A;  1MVH A;  5EX0 A;  3MO2 A;  3M56 A;  3DAL A;  5TTF A;  3K5K A;  5CCL A;  5T0M A;  5AYF A;  5CPR B;  1N3J A;  4J83 A;  2BQZ A;  3KMJ A;  3OXG A;  5KJK A;  2W5Z A;  3RAY A;  2W5Y A;  4IJD A;  4J7I A;  3S7J A;  3CBP A;  3CBM A;  2F69 A;  2IGQ A;  4QEO A;  4MI0 A;  4AU7 A;  3F9X A;  1XQH A;  4BUP A;  1MVX A;  5T5G A;  4JDS A;  1H3I A;  5CCM A;  3IHX A;  4I51 A;  3QWV A;  3VUZ A;  5EX3 A;  3RJW A;  1MT6 A;  3VV0 A;  5F5E A;  4YNM A;  3MO0 A;  5F6K C;  3QWW A;  4YPE A;  3N71 A;  5F59 A;  3SW9 A;  3EP0 A;  5JJ0 A;  3PDN A;  4Z4P A;  3RQ4 A;  5JIY A;  4J7F A;  4E47 A;  3OXF A;  1N6C A;  5TH7 A;  3KMT A;  3MO5 A;  5LSZ A;  1ZKK A;  4C1Q A;  4QEN A;  5KJN A;  5ARF A;  5JHN A;  4YND A;  4O6F A;  3M5A A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...