1N3JA

Structure and substrate of a histone h3 lysine methyltransferase from paramecium bursaria chlorella virus 1
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
119
structure length
119
Chain Sequence
MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Paramecium bursaria chlorella virus 1
publication title A dimeric viral SET domain methyltransferase specific to Lys27 of histone H3.
pubmed doi rcsb
molecule keywords Histone H3 Lysine Methyltransferase
total genus 8
structure length 119
sequence length 119
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 1n3jA00
3MO0A 5T0MA 4BUPA 4MI5A 3TG4A 4YPAA 3FPDA 3RIBA 3BO5A 2G46A 1ML9A 5F59A 3PDNA 3RQ4A 2QPWA 4C1QA 3M58A 5F5EA 3MO2A 4E47A 5JINA 3SW9A 5JIYA 3KMJA 2RFIA 5ARFA 3TG5A 4YPEA 5TTFA 3F9ZA 5JHNA 4Z4PA 5T0KA 3N71A 3MEKA 4I51A 3QWWA 3RJWA 5KJMA 3CBMA 4IJ8A 3VUZA 5KJLA 5KJKA 3OXLA 4O30A 4YNDA 1N6CA 4WUYA 4QENA 3RU0A 3M55A 3QWPA 1MVHA 4JDSA 3OXFA 4YNMA 5T5GA 3S8PA 1N6AA 4NVQA 4J8OA 1ZKKA 3KMTA 3S7FA 4H12A 1O9SA 5LSXA 1XQHA 5EX0A 3M54A 4O6FA 5TEGA 3IHXA 5HQ8A 5CCLA 3M59A 3SWCA 2BQZA 3MO5A 4QEOA 5EG2A 3F9YA 3OOIA 4J7FA 3OS5A 4NJ5A 3S7DA 4MI0A 2F69A 1PEGA 5LSZA 3KMAA 1MUFA 5HI7A 5CCMA 5JJ0A 3F9WA 3OXGA 4JLGA 4YPUA 5F6LA 5KJNA 4AU7A 4J83A 4YNPA 2R3AA 3M56A 5ARGA 3VV0A 5F6KC 2IGQA 3CBOA 3EP0A 3HNAA 5AYFA 3M57A 1MVXA 3S7BA 1MT6A 3S7JA 4QEPA 5CPRB 3M5AA 3K5KA 1H3IA 2JV0A 3RAYA 2W5YA 1N3JA 5EX3A 5TH7A 3F9XA 4RZ0A 3M53A 4J7IA 3DB5A 3QWVA 3DALA 4FMUA 2O8JA 4IJDA 2W5ZA 4LDGA 3CBPA 3OPEA
chains in the Genus database with same CATH superfamily
3MO0A 5T0MA 4BUPA 4MI5A 3TG4A 4YPAA 3FPDA 3RIBA 3BO5A 2G46A 1ML9A 5F59A 3PDNA 3RQ4A 2QPWA 4C1QA 3M58A 5F5EA 3MO2A 4E47A 5JINA 3SW9A 5JIYA 3KMJA 2RFIA 5ARFA 3TG5A 4YPEA 5TTFA 3F9ZA 5JHNA 4Z4PA 5T0KA 3N71A 3MEKA 4I51A 3QWWA 3RJWA 5KJMA 3CBMA 4IJ8A 3VUZA 5KJLA 5KJKA 3OXLA 4O30A 4YNDA 1N6CA 4WUYA 4QENA 3RU0A 3M55A 3QWPA 1MVHA 4JDSA 3OXFA 4YNMA 5T5GA 3S8PA 1N6AA 4NVQA 4J8OA 1ZKKA 3KMTA 3S7FA 4H12A 1O9SA 5LSXA 1XQHA 5EX0A 3M54A 4O6FA 5TEGA 3IHXA 5HQ8A 5CCLA 3M59A 3SWCA 2BQZA 3MO5A 4QEOA 5EG2A 3F9YA 3OOIA 4J7FA 3OS5A 4NJ5A 3S7DA 4MI0A 2F69A 1PEGA 5LSZA 3KMAA 1MUFA 5HI7A 5CCMA 5JJ0A 3F9WA 3OXGA 4JLGA 4YPUA 5F6LA 5KJNA 4AU7A 4J83A 4YNPA 2R3AA 3M56A 5ARGA 3VV0A 5F6KC 2IGQA 3CBOA 3EP0A 3HNAA 5AYFA 3M57A 1MVXA 3S7BA 1MT6A 3S7JA 4QEPA 5CPRB 3M5AA 3K5KA 1H3IA 2JV0A 3RAYA 2W5YA 1N3JA 5EX3A 5TH7A 3F9XA 4RZ0A 3M53A 4J7IA 3DB5A 3QWVA 3DALA 4FMUA 2O8JA 4IJDA 2W5ZA 4LDGA 3CBPA 3OPEA
chains in the Genus database with same CATH topology
3MO0A 5T0MA 4BUPA 4MI5A 3TG4A 4YPAA 3FPDA 3RIBA 3BO5A 2G46A 1ML9A 5F59A 3PDNA 3RQ4A 2QPWA 4C1QA 3M58A 5F5EA 3MO2A 4E47A 5JINA 3SW9A 5JIYA 3KMJA 2RFIA 5ARFA 3TG5A 4YPEA 5TTFA 3F9ZA 5JHNA 4Z4PA 5T0KA 3N71A 3MEKA 4I51A 3QWWA 3RJWA 5KJMA 3CBMA 4IJ8A 3VUZA 5KJLA 5KJKA 3OXLA 4O30A 4YNDA 1N6CA 4WUYA 4QENA 3RU0A 3M55A 3QWPA 1MVHA 4JDSA 3OXFA 4YNMA 5T5GA 3S8PA 1N6AA 4NVQA 4J8OA 1ZKKA 3KMTA 3S7FA 4H12A 1O9SA 5LSXA 1XQHA 5EX0A 3M54A 4O6FA 5TEGA 3IHXA 5HQ8A 5CCLA 3M59A 3SWCA 2BQZA 3MO5A 4QEOA 5EG2A 3F9YA 3OOIA 4J7FA 3OS5A 4NJ5A 3S7DA 4MI0A 2F69A 1PEGA 5LSZA 3KMAA 1MUFA 5HI7A 5CCMA 5JJ0A 3F9WA 3OXGA 4JLGA 4YPUA 5F6LA 5KJNA 4AU7A 4J83A 4YNPA 2R3AA 3M56A 5ARGA 3VV0A 5F6KC 2IGQA 3CBOA 3EP0A 3HNAA 5AYFA 3M57A 1MVXA 3S7BA 1MT6A 3S7JA 4QEPA 5CPRB 3M5AA 3K5KA 1H3IA 2JV0A 3RAYA 2W5YA 1N3JA 5EX3A 5TH7A 3F9XA 4RZ0A 3M53A 4J7IA 3DB5A 3QWVA 3DALA 4FMUA 2O8JA 4IJDA 2W5ZA 4LDGA 3CBPA 3OPEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MO0 A;  5T0M A;  4BUP A;  4MI5 A;  3TG4 A;  4YPA A;  3FPD A;  3RIB A;  3BO5 A;  2G46 A;  1ML9 A;  5F59 A;  3PDN A;  3RQ4 A;  2QPW A;  4C1Q A;  3M58 A;  5F5E A;  3MO2 A;  4E47 A;  5JIN A;  3SW9 A;  5JIY A;  3KMJ A;  2RFI A;  5ARF A;  3TG5 A;  4YPE A;  5TTF A;  3F9Z A;  5JHN A;  4Z4P A;  5T0K A;  3N71 A;  3MEK A;  4I51 A;  3QWW A;  3RJW A;  5KJM A;  3CBM A;  4IJ8 A;  3VUZ A;  5KJL A;  5KJK A;  3OXL A;  4O30 A;  4YND A;  1N6C A;  4WUY A;  4QEN A;  3RU0 A;  3M55 A;  3QWP A;  1MVH A;  4JDS A;  3OXF A;  4YNM A;  5T5G A;  3S8P A;  1N6A A;  4NVQ A;  4J8O A;  1ZKK A;  3KMT A;  3S7F A;  4H12 A;  1O9S A;  5LSX A;  1XQH A;  5EX0 A;  3M54 A;  4O6F A;  5TEG A;  3IHX A;  5HQ8 A;  5CCL A;  3M59 A;  3SWC A;  2BQZ A;  3MO5 A;  4QEO A;  5EG2 A;  3F9Y A;  3OOI A;  4J7F A;  3OS5 A;  4NJ5 A;  3S7D A;  4MI0 A;  2F69 A;  1PEG A;  5LSZ A;  3KMA A;  1MUF A;  5HI7 A;  5CCM A;  5JJ0 A;  3F9W A;  3OXG A;  4JLG A;  4YPU A;  5F6L A;  5KJN A;  4AU7 A;  4J83 A;  4YNP A;  2R3A A;  3M56 A;  5ARG A;  3VV0 A;  5F6K C;  2IGQ A;  3CBO A;  3EP0 A;  3HNA A;  5AYF A;  3M57 A;  1MVX A;  3S7B A;  1MT6 A;  3S7J A;  4QEP A;  5CPR B;  3M5A A;  3K5K A;  1H3I A;  2JV0 A;  3RAY A;  2W5Y A;  1N3J A;  5EX3 A;  5TH7 A;  3F9X A;  4RZ0 A;  3M53 A;  4J7I A;  3DB5 A;  3QWV A;  3DAL A;  4FMU A;  2O8J A;  4IJD A;  2W5Z A;  4LDG A;  3CBP A;  3OPE A; 
#chains in the Genus database with same CATH topology
 3MO0 A;  5T0M A;  4BUP A;  4MI5 A;  3TG4 A;  4YPA A;  3FPD A;  3RIB A;  3BO5 A;  2G46 A;  1ML9 A;  5F59 A;  3PDN A;  3RQ4 A;  2QPW A;  4C1Q A;  3M58 A;  5F5E A;  3MO2 A;  4E47 A;  5JIN A;  3SW9 A;  5JIY A;  3KMJ A;  2RFI A;  5ARF A;  3TG5 A;  4YPE A;  5TTF A;  3F9Z A;  5JHN A;  4Z4P A;  5T0K A;  3N71 A;  3MEK A;  4I51 A;  3QWW A;  3RJW A;  5KJM A;  3CBM A;  4IJ8 A;  3VUZ A;  5KJL A;  5KJK A;  3OXL A;  4O30 A;  4YND A;  1N6C A;  4WUY A;  4QEN A;  3RU0 A;  3M55 A;  3QWP A;  1MVH A;  4JDS A;  3OXF A;  4YNM A;  5T5G A;  3S8P A;  1N6A A;  4NVQ A;  4J8O A;  1ZKK A;  3KMT A;  3S7F A;  4H12 A;  1O9S A;  5LSX A;  1XQH A;  5EX0 A;  3M54 A;  4O6F A;  5TEG A;  3IHX A;  5HQ8 A;  5CCL A;  3M59 A;  3SWC A;  2BQZ A;  3MO5 A;  4QEO A;  5EG2 A;  3F9Y A;  3OOI A;  4J7F A;  3OS5 A;  4NJ5 A;  3S7D A;  4MI0 A;  2F69 A;  1PEG A;  5LSZ A;  3KMA A;  1MUF A;  5HI7 A;  5CCM A;  5JJ0 A;  3F9W A;  3OXG A;  4JLG A;  4YPU A;  5F6L A;  5KJN A;  4AU7 A;  4J83 A;  4YNP A;  2R3A A;  3M56 A;  5ARG A;  3VV0 A;  5F6K C;  2IGQ A;  3CBO A;  3EP0 A;  3HNA A;  5AYF A;  3M57 A;  1MVX A;  3S7B A;  1MT6 A;  3S7J A;  4QEP A;  5CPR B;  3M5A A;  3K5K A;  1H3I A;  2JV0 A;  3RAY A;  2W5Y A;  1N3J A;  5EX3 A;  5TH7 A;  3F9X A;  4RZ0 A;  3M53 A;  4J7I A;  3DB5 A;  3QWV A;  3DAL A;  4FMU A;  2O8J A;  4IJD A;  2W5Z A;  4LDG A;  3CBP A;  3OPE A; 
#chains in the Genus database with same CATH homology
 3MO0 A;  5T0M A;  4BUP A;  4MI5 A;  3TG4 A;  4YPA A;  3FPD A;  3RIB A;  3BO5 A;  2G46 A;  1ML9 A;  5F59 A;  3PDN A;  3RQ4 A;  2QPW A;  4C1Q A;  3M58 A;  5F5E A;  3MO2 A;  4E47 A;  5JIN A;  3SW9 A;  5JIY A;  3KMJ A;  2RFI A;  5ARF A;  3TG5 A;  4YPE A;  5TTF A;  3F9Z A;  5JHN A;  4Z4P A;  5T0K A;  3N71 A;  3MEK A;  4I51 A;  3QWW A;  3RJW A;  5KJM A;  3CBM A;  4IJ8 A;  3VUZ A;  5KJL A;  5KJK A;  3OXL A;  4O30 A;  4YND A;  1N6C A;  4WUY A;  4QEN A;  3RU0 A;  3M55 A;  3QWP A;  1MVH A;  4JDS A;  3OXF A;  4YNM A;  5T5G A;  3S8P A;  1N6A A;  4NVQ A;  4J8O A;  1ZKK A;  3KMT A;  3S7F A;  4H12 A;  1O9S A;  5LSX A;  1XQH A;  5EX0 A;  3M54 A;  4O6F A;  5TEG A;  3IHX A;  5HQ8 A;  5CCL A;  3M59 A;  3SWC A;  2BQZ A;  3MO5 A;  4QEO A;  5EG2 A;  3F9Y A;  3OOI A;  4J7F A;  3OS5 A;  4NJ5 A;  3S7D A;  4MI0 A;  2F69 A;  1PEG A;  5LSZ A;  3KMA A;  1MUF A;  5HI7 A;  5CCM A;  5JJ0 A;  3F9W A;  3OXG A;  4JLG A;  4YPU A;  5F6L A;  5KJN A;  4AU7 A;  4J83 A;  4YNP A;  2R3A A;  3M56 A;  5ARG A;  3VV0 A;  5F6K C;  2IGQ A;  3CBO A;  3EP0 A;  3HNA A;  5AYF A;  3M57 A;  1MVX A;  3S7B A;  1MT6 A;  3S7J A;  4QEP A;  5CPR B;  3M5A A;  3K5K A;  1H3I A;  2JV0 A;  3RAY A;  2W5Y A;  1N3J A;  5EX3 A;  5TH7 A;  3F9X A;  4RZ0 A;  3M53 A;  4J7I A;  3DB5 A;  3QWV A;  3DAL A;  4FMU A;  2O8J A;  4IJD A;  2W5Z A;  4LDG A;  3CBP A;  3OPE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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