5F6LA

The crystal structure of mll1 (n3861i/q3867l) in complex with rbbp5 and ash2l
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
156
structure length
153
Chain Sequence
LPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGIVIRSILTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDKLPCNCGAKKCRKFLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding/transferase
source organism Homo sapiens
publication title Structural basis for activity regulation of MLL family methyltransferases.
pubmed doi rcsb
molecule keywords Retinoblastoma-binding protein 5
total genus 44
structure length 153
sequence length 156
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2015-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 5f6lA00
4YPAA 5JHNA 5KJKA 5T5GA 3RU0A 4J8OA 5LSXA 1MVXA 4J7IA 3RAYA 5TH7A 3TG5A 3F9XA 1N6CA 3S8PA 3QWWA 3TG4A 3VV0A 1ZKKA 3MO2A 3QWVA 4NVQA 2W5ZA 4I51A 3S7DA 5F6LA 3M56A 5HQ8A 4QEOA 5AYFA 4IJ8A 3CBMA 1N6AA 5KJLA 5F59A 3M58A 4QENA 3M59A 4YNDA 1MT6A 5F5EA 5JINA 3S7FA 5KJNA 5T0MA 4JDSA 3IHXA 3OPEA 3F9ZA 4AU7A 4E47A 2BQZA 5F6KC 3MEKA 5ARGA 1PEGA 3OOIA 1O9SA 4YNPA 1MUFA 2R3AA 3KMJA 3K5KA 4BUPA 3MO0A 5CCMA 3S7JA 2W5YA 3SW9A 3OXGA 5TTFA 3RIBA 3KMTA 4YPUA 4YPEA 3N71A 4RZ0A 3S7BA 5JJ0A 1XQHA 3CBOA 5ARFA 2RFIA 2IGQA 3PDNA 1N3JA 5HI7A 4O30A 5KJMA 3M55A 3CBPA 4J7FA 3EP0A 4H12A 3RQ4A 5CCLA 4J83A 5EX0A 5TEGA 5LSZA 1ML9A 3M5AA 3OS5A 2O8JA 4MI5A 5EX3A 3VUZA 3M57A 5T0KA 2F69A 3M53A 4MI0A 3F9WA 4JLGA 4FMUA 4YNMA 3RJWA 4Z4PA 3KMAA 2JV0A 3OXLA 3DALA 3M54A 4C1QA 4IJDA 3BO5A 5JIYA 4LDGA 3HNAA 2G46A 1H3IA 3FPDA 3DB5A 4O6FA 3SWCA 2QPWA 4NJ5A 1MVHA 4WUYA 5EG2A 3QWPA 5CPRB 3OXFA 4QEPA 3F9YA 3MO5A
chains in the Genus database with same CATH superfamily
4YPAA 5JHNA 5KJKA 5T5GA 3RU0A 4J8OA 5LSXA 1MVXA 4J7IA 3RAYA 5TH7A 3TG5A 3F9XA 1N6CA 3S8PA 3QWWA 3TG4A 3VV0A 1ZKKA 3MO2A 3QWVA 4NVQA 2W5ZA 4I51A 3S7DA 5F6LA 3M56A 5HQ8A 4QEOA 5AYFA 4IJ8A 3CBMA 1N6AA 5KJLA 5F59A 3M58A 4QENA 3M59A 4YNDA 1MT6A 5F5EA 5JINA 3S7FA 5KJNA 5T0MA 4JDSA 3IHXA 3OPEA 3F9ZA 4AU7A 4E47A 2BQZA 5F6KC 3MEKA 5ARGA 1PEGA 3OOIA 1O9SA 4YNPA 1MUFA 2R3AA 3KMJA 3K5KA 4BUPA 3MO0A 5CCMA 3S7JA 2W5YA 3SW9A 3OXGA 5TTFA 3RIBA 3KMTA 4YPUA 4YPEA 3N71A 4RZ0A 3S7BA 5JJ0A 1XQHA 3CBOA 5ARFA 2RFIA 2IGQA 3PDNA 1N3JA 5HI7A 4O30A 5KJMA 3M55A 3CBPA 4J7FA 3EP0A 4H12A 3RQ4A 5CCLA 4J83A 5EX0A 5TEGA 5LSZA 1ML9A 3M5AA 3OS5A 2O8JA 4MI5A 5EX3A 3VUZA 3M57A 5T0KA 2F69A 3M53A 4MI0A 3F9WA 4JLGA 4FMUA 4YNMA 3RJWA 4Z4PA 3KMAA 2JV0A 3OXLA 3DALA 3M54A 4C1QA 4IJDA 3BO5A 5JIYA 4LDGA 3HNAA 2G46A 1H3IA 3FPDA 3DB5A 4O6FA 3SWCA 2QPWA 4NJ5A 1MVHA 4WUYA 5EG2A 3QWPA 5CPRB 3OXFA 4QEPA 3F9YA 3MO5A
chains in the Genus database with same CATH topology
4YPAA 5JHNA 5KJKA 5T5GA 3RU0A 4J8OA 5LSXA 1MVXA 4J7IA 3RAYA 5TH7A 3TG5A 3F9XA 1N6CA 3S8PA 3QWWA 3TG4A 3VV0A 1ZKKA 3MO2A 3QWVA 4NVQA 2W5ZA 4I51A 3S7DA 5F6LA 3M56A 5HQ8A 4QEOA 5AYFA 4IJ8A 3CBMA 1N6AA 5KJLA 5F59A 3M58A 4QENA 3M59A 4YNDA 1MT6A 5F5EA 5JINA 3S7FA 5KJNA 5T0MA 4JDSA 3IHXA 3OPEA 3F9ZA 4AU7A 4E47A 2BQZA 5F6KC 3MEKA 5ARGA 1PEGA 3OOIA 1O9SA 4YNPA 1MUFA 2R3AA 3KMJA 3K5KA 4BUPA 3MO0A 5CCMA 3S7JA 2W5YA 3SW9A 3OXGA 5TTFA 3RIBA 3KMTA 4YPUA 4YPEA 3N71A 4RZ0A 3S7BA 5JJ0A 1XQHA 3CBOA 5ARFA 2RFIA 2IGQA 3PDNA 1N3JA 5HI7A 4O30A 5KJMA 3M55A 3CBPA 4J7FA 3EP0A 4H12A 3RQ4A 5CCLA 4J83A 5EX0A 5TEGA 5LSZA 1ML9A 3M5AA 3OS5A 2O8JA 4MI5A 5EX3A 3VUZA 3M57A 5T0KA 2F69A 3M53A 4MI0A 3F9WA 4JLGA 4FMUA 4YNMA 3RJWA 4Z4PA 3KMAA 2JV0A 3OXLA 3DALA 3M54A 4C1QA 4IJDA 3BO5A 5JIYA 4LDGA 3HNAA 2G46A 1H3IA 3FPDA 3DB5A 4O6FA 3SWCA 2QPWA 4NJ5A 1MVHA 4WUYA 5EG2A 3QWPA 5CPRB 3OXFA 4QEPA 3F9YA 3MO5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YPA A;  5JHN A;  5KJK A;  5T5G A;  3RU0 A;  4J8O A;  5LSX A;  1MVX A;  4J7I A;  3RAY A;  5TH7 A;  3TG5 A;  3F9X A;  1N6C A;  3S8P A;  3QWW A;  3TG4 A;  3VV0 A;  1ZKK A;  3MO2 A;  3QWV A;  4NVQ A;  2W5Z A;  4I51 A;  3S7D A;  5F6L A;  3M56 A;  5HQ8 A;  4QEO A;  5AYF A;  4IJ8 A;  3CBM A;  1N6A A;  5KJL A;  5F59 A;  3M58 A;  4QEN A;  3M59 A;  4YND A;  1MT6 A;  5F5E A;  5JIN A;  3S7F A;  5KJN A;  5T0M A;  4JDS A;  3IHX A;  3OPE A;  3F9Z A;  4AU7 A;  4E47 A;  2BQZ A;  5F6K C;  3MEK A;  5ARG A;  1PEG A;  3OOI A;  1O9S A;  4YNP A;  1MUF A;  2R3A A;  3KMJ A;  3K5K A;  4BUP A;  3MO0 A;  5CCM A;  3S7J A;  2W5Y A;  3SW9 A;  3OXG A;  5TTF A;  3RIB A;  3KMT A;  4YPU A;  4YPE A;  3N71 A;  4RZ0 A;  3S7B A;  5JJ0 A;  1XQH A;  3CBO A;  5ARF A;  2RFI A;  2IGQ A;  3PDN A;  1N3J A;  5HI7 A;  4O30 A;  5KJM A;  3M55 A;  3CBP A;  4J7F A;  3EP0 A;  4H12 A;  3RQ4 A;  5CCL A;  4J83 A;  5EX0 A;  5TEG A;  5LSZ A;  1ML9 A;  3M5A A;  3OS5 A;  2O8J A;  4MI5 A;  5EX3 A;  3VUZ A;  3M57 A;  5T0K A;  2F69 A;  3M53 A;  4MI0 A;  3F9W A;  4JLG A;  4FMU A;  4YNM A;  3RJW A;  4Z4P A;  3KMA A;  2JV0 A;  3OXL A;  3DAL A;  3M54 A;  4C1Q A;  4IJD A;  3BO5 A;  5JIY A;  4LDG A;  3HNA A;  2G46 A;  1H3I A;  3FPD A;  3DB5 A;  4O6F A;  3SWC A;  2QPW A;  4NJ5 A;  1MVH A;  4WUY A;  5EG2 A;  3QWP A;  5CPR B;  3OXF A;  4QEP A;  3F9Y A;  3MO5 A; 
#chains in the Genus database with same CATH topology
 4YPA A;  5JHN A;  5KJK A;  5T5G A;  3RU0 A;  4J8O A;  5LSX A;  1MVX A;  4J7I A;  3RAY A;  5TH7 A;  3TG5 A;  3F9X A;  1N6C A;  3S8P A;  3QWW A;  3TG4 A;  3VV0 A;  1ZKK A;  3MO2 A;  3QWV A;  4NVQ A;  2W5Z A;  4I51 A;  3S7D A;  5F6L A;  3M56 A;  5HQ8 A;  4QEO A;  5AYF A;  4IJ8 A;  3CBM A;  1N6A A;  5KJL A;  5F59 A;  3M58 A;  4QEN A;  3M59 A;  4YND A;  1MT6 A;  5F5E A;  5JIN A;  3S7F A;  5KJN A;  5T0M A;  4JDS A;  3IHX A;  3OPE A;  3F9Z A;  4AU7 A;  4E47 A;  2BQZ A;  5F6K C;  3MEK A;  5ARG A;  1PEG A;  3OOI A;  1O9S A;  4YNP A;  1MUF A;  2R3A A;  3KMJ A;  3K5K A;  4BUP A;  3MO0 A;  5CCM A;  3S7J A;  2W5Y A;  3SW9 A;  3OXG A;  5TTF A;  3RIB A;  3KMT A;  4YPU A;  4YPE A;  3N71 A;  4RZ0 A;  3S7B A;  5JJ0 A;  1XQH A;  3CBO A;  5ARF A;  2RFI A;  2IGQ A;  3PDN A;  1N3J A;  5HI7 A;  4O30 A;  5KJM A;  3M55 A;  3CBP A;  4J7F A;  3EP0 A;  4H12 A;  3RQ4 A;  5CCL A;  4J83 A;  5EX0 A;  5TEG A;  5LSZ A;  1ML9 A;  3M5A A;  3OS5 A;  2O8J A;  4MI5 A;  5EX3 A;  3VUZ A;  3M57 A;  5T0K A;  2F69 A;  3M53 A;  4MI0 A;  3F9W A;  4JLG A;  4FMU A;  4YNM A;  3RJW A;  4Z4P A;  3KMA A;  2JV0 A;  3OXL A;  3DAL A;  3M54 A;  4C1Q A;  4IJD A;  3BO5 A;  5JIY A;  4LDG A;  3HNA A;  2G46 A;  1H3I A;  3FPD A;  3DB5 A;  4O6F A;  3SWC A;  2QPW A;  4NJ5 A;  1MVH A;  4WUY A;  5EG2 A;  3QWP A;  5CPR B;  3OXF A;  4QEP A;  3F9Y A;  3MO5 A; 
#chains in the Genus database with same CATH homology
 4YPA A;  5JHN A;  5KJK A;  5T5G A;  3RU0 A;  4J8O A;  5LSX A;  1MVX A;  4J7I A;  3RAY A;  5TH7 A;  3TG5 A;  3F9X A;  1N6C A;  3S8P A;  3QWW A;  3TG4 A;  3VV0 A;  1ZKK A;  3MO2 A;  3QWV A;  4NVQ A;  2W5Z A;  4I51 A;  3S7D A;  5F6L A;  3M56 A;  5HQ8 A;  4QEO A;  5AYF A;  4IJ8 A;  3CBM A;  1N6A A;  5KJL A;  5F59 A;  3M58 A;  4QEN A;  3M59 A;  4YND A;  1MT6 A;  5F5E A;  5JIN A;  3S7F A;  5KJN A;  5T0M A;  4JDS A;  3IHX A;  3OPE A;  3F9Z A;  4AU7 A;  4E47 A;  2BQZ A;  5F6K C;  3MEK A;  5ARG A;  1PEG A;  3OOI A;  1O9S A;  4YNP A;  1MUF A;  2R3A A;  3KMJ A;  3K5K A;  4BUP A;  3MO0 A;  5CCM A;  3S7J A;  2W5Y A;  3SW9 A;  3OXG A;  5TTF A;  3RIB A;  3KMT A;  4YPU A;  4YPE A;  3N71 A;  4RZ0 A;  3S7B A;  5JJ0 A;  1XQH A;  3CBO A;  5ARF A;  2RFI A;  2IGQ A;  3PDN A;  1N3J A;  5HI7 A;  4O30 A;  5KJM A;  3M55 A;  3CBP A;  4J7F A;  3EP0 A;  4H12 A;  3RQ4 A;  5CCL A;  4J83 A;  5EX0 A;  5TEG A;  5LSZ A;  1ML9 A;  3M5A A;  3OS5 A;  2O8J A;  4MI5 A;  5EX3 A;  3VUZ A;  3M57 A;  5T0K A;  2F69 A;  3M53 A;  4MI0 A;  3F9W A;  4JLG A;  4FMU A;  4YNM A;  3RJW A;  4Z4P A;  3KMA A;  2JV0 A;  3OXL A;  3DAL A;  3M54 A;  4C1Q A;  4IJD A;  3BO5 A;  5JIY A;  4LDG A;  3HNA A;  2G46 A;  1H3I A;  3FPD A;  3DB5 A;  4O6F A;  3SWC A;  2QPW A;  4NJ5 A;  1MVH A;  4WUY A;  5EG2 A;  3QWP A;  5CPR B;  3OXF A;  4QEP A;  3F9Y A;  3MO5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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