4LDGA

Crystal structure of cpset8 from cryptosporidium, cgd4_370
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
254
structure length
216
Chain Sequence
DIFYELSQKLIQDLYSKIPYFERNGIEYFTDTRRSSKRVSFGANSEISIIEATIDMNYKVIHLPIYNYSEKWKKIIYKYCILNEIHSCTLIKKDAFKGRCVIAGSLIRKDDFVLEYKGNLITQLNEAKELEEKYALSNRGCYMYYFKANDKNYCIDATEECLEFGPGRLINHSRKNPNIITKVLMIENTPRLFFVSKRDIICGEELLFDYGDNNPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of CpSET8 from Cryptosporidium, cgd4_370
rcsb
source organism Cryptosporidium parvum
molecule tags Unknown function
molecule keywords Protein with a SET domain within carboxy region
total genus 57
structure length 216
sequence length 254
ec nomenclature
pdb deposition date 2013-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 4ldgA00
5EG2A 2F69A 4MI0A 4J8OA 3MO5A 3VV0A 1MUFA 5CCLA 5TEGA 4NJ5A 5CPRB 3KMAA 3M5AA 4YNDA 4MI5A 4IJ8A 4BUPA 5ARFA 3VUZA 3MO2A 3M55A 3RIBA 3QWWA 3CBMA 3RU0A 3DB5A 5T0KA 3MEKA 3M57A 3OOIA 3RAYA 3PDNA 3TG5A 3F9YA 1MVXA 3RJWA 1N6AA 4YNPA 4O6FA 5TTFA 1H3IA 3OXFA 5CCMA 2QPWA 3F9WA 3M58A 5HI7A 1PEGA 3QWVA 2O8JA 5KJNA 3SWCA 5JINA 4FMUA 2JV0A 3K5KA 3QWPA 2IGQA 3OXGA 3M53A 5F59A 5LSXA 4NVQA 5JHNA 3M59A 1XQHA 4I51A 3EP0A 5EX3A 4QEOA 5T0MA 4J7FA 2W5YA 5F6KC 4YPUA 4RZ0A 3M54A 3CBPA 3DALA 4J83A 3M56A 3S7FA 4AU7A 3OS5A 4YPAA 3F9ZA 2R3AA 3SW9A 2G46A 4Z4PA 1MT6A 5TH7A 3KMJA 4E47A 3CBOA 3HNAA 3BO5A 3IHXA 3S7JA 4C1QA 2RFIA 5KJLA 5F5EA 1O9SA 5ARGA 4WUYA 1MVHA 1ML9A 1N6CA 3OPEA 4LDGA 3TG4A 3S8PA 4H12A 5T5GA 3S7DA 2BQZA 5KJKA 5F6LA 5JIYA 4JLGA 4QENA 4YNMA 4QEPA 5HQ8A 3S7BA 3MO0A 4JDSA 5LSZA 5EX0A 3F9XA 2W5ZA 3KMTA 3OXLA 4O30A 4IJDA 4YPEA 5JJ0A 5KJMA 1ZKKA 4J7IA 3FPDA 3N71A 5AYFA 1N3JA 3RQ4A
chains in the Genus database with same CATH superfamily
5EG2A 2F69A 4MI0A 4J8OA 3MO5A 3VV0A 1MUFA 5CCLA 5TEGA 4NJ5A 5CPRB 3KMAA 3M5AA 4YNDA 4MI5A 4IJ8A 4BUPA 5ARFA 3VUZA 3MO2A 3M55A 3RIBA 3QWWA 3CBMA 3RU0A 3DB5A 5T0KA 3MEKA 3M57A 3OOIA 3RAYA 3PDNA 3TG5A 3F9YA 1MVXA 3RJWA 1N6AA 4YNPA 4O6FA 5TTFA 1H3IA 3OXFA 5CCMA 2QPWA 3F9WA 3M58A 5HI7A 1PEGA 3QWVA 2O8JA 5KJNA 3SWCA 5JINA 4FMUA 2JV0A 3K5KA 3QWPA 2IGQA 3OXGA 3M53A 5F59A 5LSXA 4NVQA 5JHNA 3M59A 1XQHA 4I51A 3EP0A 5EX3A 4QEOA 5T0MA 4J7FA 2W5YA 5F6KC 4YPUA 4RZ0A 3M54A 3CBPA 3DALA 4J83A 3M56A 3S7FA 4AU7A 3OS5A 4YPAA 3F9ZA 2R3AA 3SW9A 2G46A 4Z4PA 1MT6A 5TH7A 3KMJA 4E47A 3CBOA 3HNAA 3BO5A 3IHXA 3S7JA 4C1QA 2RFIA 5KJLA 5F5EA 1O9SA 5ARGA 4WUYA 1MVHA 1ML9A 1N6CA 3OPEA 4LDGA 3TG4A 3S8PA 4H12A 5T5GA 3S7DA 2BQZA 5KJKA 5F6LA 5JIYA 4JLGA 4QENA 4YNMA 4QEPA 5HQ8A 3S7BA 3MO0A 4JDSA 5LSZA 5EX0A 3F9XA 2W5ZA 3KMTA 3OXLA 4O30A 4IJDA 4YPEA 5JJ0A 5KJMA 1ZKKA 4J7IA 3FPDA 3N71A 5AYFA 1N3JA 3RQ4A
chains in the Genus database with same CATH topology
5EG2A 2F69A 4MI0A 4J8OA 3MO5A 3VV0A 1MUFA 5CCLA 5TEGA 4NJ5A 5CPRB 3KMAA 3M5AA 4YNDA 4MI5A 4IJ8A 4BUPA 5ARFA 3VUZA 3MO2A 3M55A 3RIBA 3QWWA 3CBMA 3RU0A 3DB5A 5T0KA 3MEKA 3M57A 3OOIA 3RAYA 3PDNA 3TG5A 3F9YA 1MVXA 3RJWA 1N6AA 4YNPA 4O6FA 5TTFA 1H3IA 3OXFA 5CCMA 2QPWA 3F9WA 3M58A 5HI7A 1PEGA 3QWVA 2O8JA 5KJNA 3SWCA 5JINA 4FMUA 2JV0A 3K5KA 3QWPA 2IGQA 3OXGA 3M53A 5F59A 5LSXA 4NVQA 5JHNA 3M59A 1XQHA 4I51A 3EP0A 5EX3A 4QEOA 5T0MA 4J7FA 2W5YA 5F6KC 4YPUA 4RZ0A 3M54A 3CBPA 3DALA 4J83A 3M56A 3S7FA 4AU7A 3OS5A 4YPAA 3F9ZA 2R3AA 3SW9A 2G46A 4Z4PA 1MT6A 5TH7A 3KMJA 4E47A 3CBOA 3HNAA 3BO5A 3IHXA 3S7JA 4C1QA 2RFIA 5KJLA 5F5EA 1O9SA 5ARGA 4WUYA 1MVHA 1ML9A 1N6CA 3OPEA 4LDGA 3TG4A 3S8PA 4H12A 5T5GA 3S7DA 2BQZA 5KJKA 5F6LA 5JIYA 4JLGA 4QENA 4YNMA 4QEPA 5HQ8A 3S7BA 3MO0A 4JDSA 5LSZA 5EX0A 3F9XA 2W5ZA 3KMTA 3OXLA 4O30A 4IJDA 4YPEA 5JJ0A 5KJMA 1ZKKA 4J7IA 3FPDA 3N71A 5AYFA 1N3JA 3RQ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EG2 A;  2F69 A;  4MI0 A;  4J8O A;  3MO5 A;  3VV0 A;  1MUF A;  5CCL A;  5TEG A;  4NJ5 A;  5CPR B;  3KMA A;  3M5A A;  4YND A;  4MI5 A;  4IJ8 A;  4BUP A;  5ARF A;  3VUZ A;  3MO2 A;  3M55 A;  3RIB A;  3QWW A;  3CBM A;  3RU0 A;  3DB5 A;  5T0K A;  3MEK A;  3M57 A;  3OOI A;  3RAY A;  3PDN A;  3TG5 A;  3F9Y A;  1MVX A;  3RJW A;  1N6A A;  4YNP A;  4O6F A;  5TTF A;  1H3I A;  3OXF A;  5CCM A;  2QPW A;  3F9W A;  3M58 A;  5HI7 A;  1PEG A;  3QWV A;  2O8J A;  5KJN A;  3SWC A;  5JIN A;  4FMU A;  2JV0 A;  3K5K A;  3QWP A;  2IGQ A;  3OXG A;  3M53 A;  5F59 A;  5LSX A;  4NVQ A;  5JHN A;  3M59 A;  1XQH A;  4I51 A;  3EP0 A;  5EX3 A;  4QEO A;  5T0M A;  4J7F A;  2W5Y A;  5F6K C;  4YPU A;  4RZ0 A;  3M54 A;  3CBP A;  3DAL A;  4J83 A;  3M56 A;  3S7F A;  4AU7 A;  3OS5 A;  4YPA A;  3F9Z A;  2R3A A;  3SW9 A;  2G46 A;  4Z4P A;  1MT6 A;  5TH7 A;  3KMJ A;  4E47 A;  3CBO A;  3HNA A;  3BO5 A;  3IHX A;  3S7J A;  4C1Q A;  2RFI A;  5KJL A;  5F5E A;  1O9S A;  5ARG A;  4WUY A;  1MVH A;  1ML9 A;  1N6C A;  3OPE A;  4LDG A;  3TG4 A;  3S8P A;  4H12 A;  5T5G A;  3S7D A;  2BQZ A;  5KJK A;  5F6L A;  5JIY A;  4JLG A;  4QEN A;  4YNM A;  4QEP A;  5HQ8 A;  3S7B A;  3MO0 A;  4JDS A;  5LSZ A;  5EX0 A;  3F9X A;  2W5Z A;  3KMT A;  3OXL A;  4O30 A;  4IJD A;  4YPE A;  5JJ0 A;  5KJM A;  1ZKK A;  4J7I A;  3FPD A;  3N71 A;  5AYF A;  1N3J A;  3RQ4 A; 
#chains in the Genus database with same CATH topology
 5EG2 A;  2F69 A;  4MI0 A;  4J8O A;  3MO5 A;  3VV0 A;  1MUF A;  5CCL A;  5TEG A;  4NJ5 A;  5CPR B;  3KMA A;  3M5A A;  4YND A;  4MI5 A;  4IJ8 A;  4BUP A;  5ARF A;  3VUZ A;  3MO2 A;  3M55 A;  3RIB A;  3QWW A;  3CBM A;  3RU0 A;  3DB5 A;  5T0K A;  3MEK A;  3M57 A;  3OOI A;  3RAY A;  3PDN A;  3TG5 A;  3F9Y A;  1MVX A;  3RJW A;  1N6A A;  4YNP A;  4O6F A;  5TTF A;  1H3I A;  3OXF A;  5CCM A;  2QPW A;  3F9W A;  3M58 A;  5HI7 A;  1PEG A;  3QWV A;  2O8J A;  5KJN A;  3SWC A;  5JIN A;  4FMU A;  2JV0 A;  3K5K A;  3QWP A;  2IGQ A;  3OXG A;  3M53 A;  5F59 A;  5LSX A;  4NVQ A;  5JHN A;  3M59 A;  1XQH A;  4I51 A;  3EP0 A;  5EX3 A;  4QEO A;  5T0M A;  4J7F A;  2W5Y A;  5F6K C;  4YPU A;  4RZ0 A;  3M54 A;  3CBP A;  3DAL A;  4J83 A;  3M56 A;  3S7F A;  4AU7 A;  3OS5 A;  4YPA A;  3F9Z A;  2R3A A;  3SW9 A;  2G46 A;  4Z4P A;  1MT6 A;  5TH7 A;  3KMJ A;  4E47 A;  3CBO A;  3HNA A;  3BO5 A;  3IHX A;  3S7J A;  4C1Q A;  2RFI A;  5KJL A;  5F5E A;  1O9S A;  5ARG A;  4WUY A;  1MVH A;  1ML9 A;  1N6C A;  3OPE A;  4LDG A;  3TG4 A;  3S8P A;  4H12 A;  5T5G A;  3S7D A;  2BQZ A;  5KJK A;  5F6L A;  5JIY A;  4JLG A;  4QEN A;  4YNM A;  4QEP A;  5HQ8 A;  3S7B A;  3MO0 A;  4JDS A;  5LSZ A;  5EX0 A;  3F9X A;  2W5Z A;  3KMT A;  3OXL A;  4O30 A;  4IJD A;  4YPE A;  5JJ0 A;  5KJM A;  1ZKK A;  4J7I A;  3FPD A;  3N71 A;  5AYF A;  1N3J A;  3RQ4 A; 
#chains in the Genus database with same CATH homology
 5EG2 A;  2F69 A;  4MI0 A;  4J8O A;  3MO5 A;  3VV0 A;  1MUF A;  5CCL A;  5TEG A;  4NJ5 A;  5CPR B;  3KMA A;  3M5A A;  4YND A;  4MI5 A;  4IJ8 A;  4BUP A;  5ARF A;  3VUZ A;  3MO2 A;  3M55 A;  3RIB A;  3QWW A;  3CBM A;  3RU0 A;  3DB5 A;  5T0K A;  3MEK A;  3M57 A;  3OOI A;  3RAY A;  3PDN A;  3TG5 A;  3F9Y A;  1MVX A;  3RJW A;  1N6A A;  4YNP A;  4O6F A;  5TTF A;  1H3I A;  3OXF A;  5CCM A;  2QPW A;  3F9W A;  3M58 A;  5HI7 A;  1PEG A;  3QWV A;  2O8J A;  5KJN A;  3SWC A;  5JIN A;  4FMU A;  2JV0 A;  3K5K A;  3QWP A;  2IGQ A;  3OXG A;  3M53 A;  5F59 A;  5LSX A;  4NVQ A;  5JHN A;  3M59 A;  1XQH A;  4I51 A;  3EP0 A;  5EX3 A;  4QEO A;  5T0M A;  4J7F A;  2W5Y A;  5F6K C;  4YPU A;  4RZ0 A;  3M54 A;  3CBP A;  3DAL A;  4J83 A;  3M56 A;  3S7F A;  4AU7 A;  3OS5 A;  4YPA A;  3F9Z A;  2R3A A;  3SW9 A;  2G46 A;  4Z4P A;  1MT6 A;  5TH7 A;  3KMJ A;  4E47 A;  3CBO A;  3HNA A;  3BO5 A;  3IHX A;  3S7J A;  4C1Q A;  2RFI A;  5KJL A;  5F5E A;  1O9S A;  5ARG A;  4WUY A;  1MVH A;  1ML9 A;  1N6C A;  3OPE A;  4LDG A;  3TG4 A;  3S8P A;  4H12 A;  5T5G A;  3S7D A;  2BQZ A;  5KJK A;  5F6L A;  5JIY A;  4JLG A;  4QEN A;  4YNM A;  4QEP A;  5HQ8 A;  3S7B A;  3MO0 A;  4JDS A;  5LSZ A;  5EX0 A;  3F9X A;  2W5Z A;  3KMT A;  3OXL A;  4O30 A;  4IJD A;  4YPE A;  5JJ0 A;  5KJM A;  1ZKK A;  4J7I A;  3FPD A;  3N71 A;  5AYF A;  1N3J A;  3RQ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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