4LDGA

Crystal structure of cpset8 from cryptosporidium, cgd4_370
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
254
structure length
216
Chain Sequence
b'DIFYELSQKLIQDLYSKIPYFERNGIEYFTDTRRSSKRVSFGANSEISIIEATIDMNYKVIHLPIYNYSEKWKKIIYKYCILNEIHSCTLIKKDAFKGRCVIAGSLIRKDDFVLEYKGNLITQLNEAKELEEKYALSNRGCYMYYFKANDKNYCIDATEECLEFGPGRLINHSRKNPNIITKVLMIENTPRLFFVSKRDIICGEELLFDYGDNNPI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein with a SET domain within carboxy region
molecule tags Unknown function
source organism Cryptosporidium parvum
publication title Crystal Structure of CpSET8 from Cryptosporidium, cgd4_370
rcsb
total genus 57
structure length 216
sequence length 254
ec nomenclature
pdb deposition date 2013-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 4ldgA00
3CBMA 4QEPA 3OOIA 3QWVA 5F5EA 4AU7A 4WUYA 5AYFA 4FMUA 4LDGA 5JHNA 4YNPA 5T5GA 2W5ZA 1MVXA 4JDSA 2BQZA 3DB5A 3OS5A 3BO5A 3M5AA 4NVQA 1N6CA 5KJMA 5F6KC 3RAYA 4JLGA 3S7BA 1MUFA 5KJNA 4MI0A 3S7JA 3PDNA 3M59A 5JINA 4RZ0A 4YPEA 1PEGA 4O6FA 1N3JA 2W5YA 3MO0A 3QWPA 4J83A 3RIBA 3MO5A 3KMAA 3VV0A 5ARGA 1MT6A 3MEKA 3SW9A 4H12A 3F9WA 5HQ8A 4YPUA 4YNDA 4IJDA 5TH7A 2F69A 3M58A 4YNMA 3M54A 1MVHA 3F9XA 4QENA 5ARFA 3EP0A 4NJ5A 5JIYA 1O9SA 3OPEA 5JJ0A 3CBPA 3SWCA 3S7FA 3CBOA 3F9ZA 3HNAA 3KMTA 3QWWA 5F59A 3F9YA 3M56A 1ML9A 5HI7A 3M55A 2QPWA 1XQHA 4J8OA 5CPRB 3IHXA 5T0MA 4E47A 3M53A 5LSXA 3S7DA 3K5KA 3TG5A 5KJLA 5CCLA 2O8JA 4QEOA 4J7FA 1N6AA 3N71A 3RQ4A 4O30A 4BUPA 3MO2A 4MI5A 5TTFA 3OXGA 1ZKKA 4YPAA 4IJ8A 4J7IA 5T0KA 2G46A 5KJKA 5EX3A 5F6LA 2RFIA 5LSZA 3M57A 2IGQA 3VUZA 5EG2A 4C1QA 1H3IA 5CCMA 3RJWA 5TEGA 3KMJA 2JV0A 4I51A 3RU0A 3FPDA 2R3AA 3OXFA 3TG4A 4Z4PA 3OXLA 5EX0A 3S8PA 3DALA
chains in the Genus database with same CATH superfamily
3CBMA 4QEPA 3OOIA 3QWVA 5F5EA 4AU7A 4WUYA 5AYFA 4FMUA 4LDGA 5JHNA 4YNPA 5T5GA 2W5ZA 1MVXA 4JDSA 2BQZA 3DB5A 3OS5A 3BO5A 3M5AA 4NVQA 1N6CA 5KJMA 5F6KC 3RAYA 4JLGA 3S7BA 1MUFA 5KJNA 4MI0A 3S7JA 3PDNA 3M59A 5JINA 4RZ0A 4YPEA 1PEGA 4O6FA 1N3JA 2W5YA 3MO0A 3QWPA 4J83A 3RIBA 3MO5A 3KMAA 3VV0A 5ARGA 1MT6A 3MEKA 3SW9A 4H12A 3F9WA 5HQ8A 4YPUA 4YNDA 4IJDA 5TH7A 2F69A 3M58A 4YNMA 3M54A 1MVHA 3F9XA 4QENA 5ARFA 3EP0A 4NJ5A 5JIYA 1O9SA 3OPEA 5JJ0A 3CBPA 3SWCA 3S7FA 3CBOA 3F9ZA 3HNAA 3KMTA 3QWWA 5F59A 3F9YA 3M56A 1ML9A 5HI7A 3M55A 2QPWA 1XQHA 4J8OA 5CPRB 3IHXA 5T0MA 4E47A 3M53A 5LSXA 3S7DA 3K5KA 3TG5A 5KJLA 5CCLA 2O8JA 4QEOA 4J7FA 1N6AA 3N71A 3RQ4A 4O30A 4BUPA 3MO2A 4MI5A 5TTFA 3OXGA 1ZKKA 4YPAA 4IJ8A 4J7IA 5T0KA 2G46A 5KJKA 5EX3A 5F6LA 2RFIA 5LSZA 3M57A 2IGQA 3VUZA 5EG2A 4C1QA 1H3IA 5CCMA 3RJWA 5TEGA 3KMJA 2JV0A 4I51A 3RU0A 3FPDA 2R3AA 3OXFA 3TG4A 4Z4PA 3OXLA 5EX0A 3S8PA 3DALA
chains in the Genus database with same CATH topology
3CBMA 4QEPA 3OOIA 3QWVA 5F5EA 4AU7A 4WUYA 5AYFA 4FMUA 4LDGA 5JHNA 4YNPA 5T5GA 2W5ZA 1MVXA 4JDSA 2BQZA 3DB5A 3OS5A 3BO5A 3M5AA 4NVQA 1N6CA 5KJMA 5F6KC 3RAYA 4JLGA 3S7BA 1MUFA 5KJNA 4MI0A 3S7JA 3PDNA 3M59A 5JINA 4RZ0A 4YPEA 1PEGA 4O6FA 1N3JA 2W5YA 3MO0A 3QWPA 4J83A 3RIBA 3MO5A 3KMAA 3VV0A 5ARGA 1MT6A 3MEKA 3SW9A 4H12A 3F9WA 5HQ8A 4YPUA 4YNDA 4IJDA 5TH7A 2F69A 3M58A 4YNMA 3M54A 1MVHA 3F9XA 4QENA 5ARFA 3EP0A 4NJ5A 5JIYA 1O9SA 3OPEA 5JJ0A 3CBPA 3SWCA 3S7FA 3CBOA 3F9ZA 3HNAA 3KMTA 3QWWA 5F59A 3F9YA 3M56A 1ML9A 5HI7A 3M55A 2QPWA 1XQHA 4J8OA 5CPRB 3IHXA 5T0MA 4E47A 3M53A 5LSXA 3S7DA 3K5KA 3TG5A 5KJLA 5CCLA 2O8JA 4QEOA 4J7FA 1N6AA 3N71A 3RQ4A 4O30A 4BUPA 3MO2A 4MI5A 5TTFA 3OXGA 1ZKKA 4YPAA 4IJ8A 4J7IA 5T0KA 2G46A 5KJKA 5EX3A 5F6LA 2RFIA 5LSZA 3M57A 2IGQA 3VUZA 5EG2A 4C1QA 1H3IA 5CCMA 3RJWA 5TEGA 3KMJA 2JV0A 4I51A 3RU0A 3FPDA 2R3AA 3OXFA 3TG4A 4Z4PA 3OXLA 5EX0A 3S8PA 3DALA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CBM A;  4QEP A;  3OOI A;  3QWV A;  5F5E A;  4AU7 A;  4WUY A;  5AYF A;  4FMU A;  4LDG A;  5JHN A;  4YNP A;  5T5G A;  2W5Z A;  1MVX A;  4JDS A;  2BQZ A;  3DB5 A;  3OS5 A;  3BO5 A;  3M5A A;  4NVQ A;  1N6C A;  5KJM A;  5F6K C;  3RAY A;  4JLG A;  3S7B A;  1MUF A;  5KJN A;  4MI0 A;  3S7J A;  3PDN A;  3M59 A;  5JIN A;  4RZ0 A;  4YPE A;  1PEG A;  4O6F A;  1N3J A;  2W5Y A;  3MO0 A;  3QWP A;  4J83 A;  3RIB A;  3MO5 A;  3KMA A;  3VV0 A;  5ARG A;  1MT6 A;  3MEK A;  3SW9 A;  4H12 A;  3F9W A;  5HQ8 A;  4YPU A;  4YND A;  4IJD A;  5TH7 A;  2F69 A;  3M58 A;  4YNM A;  3M54 A;  1MVH A;  3F9X A;  4QEN A;  5ARF A;  3EP0 A;  4NJ5 A;  5JIY A;  1O9S A;  3OPE A;  5JJ0 A;  3CBP A;  3SWC A;  3S7F A;  3CBO A;  3F9Z A;  3HNA A;  3KMT A;  3QWW A;  5F59 A;  3F9Y A;  3M56 A;  1ML9 A;  5HI7 A;  3M55 A;  2QPW A;  1XQH A;  4J8O A;  5CPR B;  3IHX A;  5T0M A;  4E47 A;  3M53 A;  5LSX A;  3S7D A;  3K5K A;  3TG5 A;  5KJL A;  5CCL A;  2O8J A;  4QEO A;  4J7F A;  1N6A A;  3N71 A;  3RQ4 A;  4O30 A;  4BUP A;  3MO2 A;  4MI5 A;  5TTF A;  3OXG A;  1ZKK A;  4YPA A;  4IJ8 A;  4J7I A;  5T0K A;  2G46 A;  5KJK A;  5EX3 A;  5F6L A;  2RFI A;  5LSZ A;  3M57 A;  2IGQ A;  3VUZ A;  5EG2 A;  4C1Q A;  1H3I A;  5CCM A;  3RJW A;  5TEG A;  3KMJ A;  2JV0 A;  4I51 A;  3RU0 A;  3FPD A;  2R3A A;  3OXF A;  3TG4 A;  4Z4P A;  3OXL A;  5EX0 A;  3S8P A;  3DAL A; 
#chains in the Genus database with same CATH topology
 3CBM A;  4QEP A;  3OOI A;  3QWV A;  5F5E A;  4AU7 A;  4WUY A;  5AYF A;  4FMU A;  4LDG A;  5JHN A;  4YNP A;  5T5G A;  2W5Z A;  1MVX A;  4JDS A;  2BQZ A;  3DB5 A;  3OS5 A;  3BO5 A;  3M5A A;  4NVQ A;  1N6C A;  5KJM A;  5F6K C;  3RAY A;  4JLG A;  3S7B A;  1MUF A;  5KJN A;  4MI0 A;  3S7J A;  3PDN A;  3M59 A;  5JIN A;  4RZ0 A;  4YPE A;  1PEG A;  4O6F A;  1N3J A;  2W5Y A;  3MO0 A;  3QWP A;  4J83 A;  3RIB A;  3MO5 A;  3KMA A;  3VV0 A;  5ARG A;  1MT6 A;  3MEK A;  3SW9 A;  4H12 A;  3F9W A;  5HQ8 A;  4YPU A;  4YND A;  4IJD A;  5TH7 A;  2F69 A;  3M58 A;  4YNM A;  3M54 A;  1MVH A;  3F9X A;  4QEN A;  5ARF A;  3EP0 A;  4NJ5 A;  5JIY A;  1O9S A;  3OPE A;  5JJ0 A;  3CBP A;  3SWC A;  3S7F A;  3CBO A;  3F9Z A;  3HNA A;  3KMT A;  3QWW A;  5F59 A;  3F9Y A;  3M56 A;  1ML9 A;  5HI7 A;  3M55 A;  2QPW A;  1XQH A;  4J8O A;  5CPR B;  3IHX A;  5T0M A;  4E47 A;  3M53 A;  5LSX A;  3S7D A;  3K5K A;  3TG5 A;  5KJL A;  5CCL A;  2O8J A;  4QEO A;  4J7F A;  1N6A A;  3N71 A;  3RQ4 A;  4O30 A;  4BUP A;  3MO2 A;  4MI5 A;  5TTF A;  3OXG A;  1ZKK A;  4YPA A;  4IJ8 A;  4J7I A;  5T0K A;  2G46 A;  5KJK A;  5EX3 A;  5F6L A;  2RFI A;  5LSZ A;  3M57 A;  2IGQ A;  3VUZ A;  5EG2 A;  4C1Q A;  1H3I A;  5CCM A;  3RJW A;  5TEG A;  3KMJ A;  2JV0 A;  4I51 A;  3RU0 A;  3FPD A;  2R3A A;  3OXF A;  3TG4 A;  4Z4P A;  3OXL A;  5EX0 A;  3S8P A;  3DAL A; 
#chains in the Genus database with same CATH homology
 3CBM A;  4QEP A;  3OOI A;  3QWV A;  5F5E A;  4AU7 A;  4WUY A;  5AYF A;  4FMU A;  4LDG A;  5JHN A;  4YNP A;  5T5G A;  2W5Z A;  1MVX A;  4JDS A;  2BQZ A;  3DB5 A;  3OS5 A;  3BO5 A;  3M5A A;  4NVQ A;  1N6C A;  5KJM A;  5F6K C;  3RAY A;  4JLG A;  3S7B A;  1MUF A;  5KJN A;  4MI0 A;  3S7J A;  3PDN A;  3M59 A;  5JIN A;  4RZ0 A;  4YPE A;  1PEG A;  4O6F A;  1N3J A;  2W5Y A;  3MO0 A;  3QWP A;  4J83 A;  3RIB A;  3MO5 A;  3KMA A;  3VV0 A;  5ARG A;  1MT6 A;  3MEK A;  3SW9 A;  4H12 A;  3F9W A;  5HQ8 A;  4YPU A;  4YND A;  4IJD A;  5TH7 A;  2F69 A;  3M58 A;  4YNM A;  3M54 A;  1MVH A;  3F9X A;  4QEN A;  5ARF A;  3EP0 A;  4NJ5 A;  5JIY A;  1O9S A;  3OPE A;  5JJ0 A;  3CBP A;  3SWC A;  3S7F A;  3CBO A;  3F9Z A;  3HNA A;  3KMT A;  3QWW A;  5F59 A;  3F9Y A;  3M56 A;  1ML9 A;  5HI7 A;  3M55 A;  2QPW A;  1XQH A;  4J8O A;  5CPR B;  3IHX A;  5T0M A;  4E47 A;  3M53 A;  5LSX A;  3S7D A;  3K5K A;  3TG5 A;  5KJL A;  5CCL A;  2O8J A;  4QEO A;  4J7F A;  1N6A A;  3N71 A;  3RQ4 A;  4O30 A;  4BUP A;  3MO2 A;  4MI5 A;  5TTF A;  3OXG A;  1ZKK A;  4YPA A;  4IJ8 A;  4J7I A;  5T0K A;  2G46 A;  5KJK A;  5EX3 A;  5F6L A;  2RFI A;  5LSZ A;  3M57 A;  2IGQ A;  3VUZ A;  5EG2 A;  4C1Q A;  1H3I A;  5CCM A;  3RJW A;  5TEG A;  3KMJ A;  2JV0 A;  4I51 A;  3RU0 A;  3FPD A;  2R3A A;  3OXF A;  3TG4 A;  4Z4P A;  3OXL A;  5EX0 A;  3S8P A;  3DAL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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