4LDGA

Crystal structure of cpset8 from cryptosporidium, cgd4_370
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
254
structure length
216
Chain Sequence
DIFYELSQKLIQDLYSKIPYFERNGIEYFTDTRRSSKRVSFGANSEISIIEATIDMNYKVIHLPIYNYSEKWKKIIYKYCILNEIHSCTLIKKDAFKGRCVIAGSLIRKDDFVLEYKGNLITQLNEAKELEEKYALSNRGCYMYYFKANDKNYCIDATEECLEFGPGRLINHSRKNPNIITKVLMIENTPRLFFVSKRDIICGEELLFDYGDNNPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of CpSET8 from Cryptosporidium, cgd4_370
rcsb
source organism Cryptosporidium parvum
molecule tags Unknown function
molecule keywords Protein with a SET domain within carboxy region
total genus 57
structure length 216
sequence length 254
ec nomenclature
pdb deposition date 2013-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 4ldgA00
5HI7A 3HNAA 5T0KA 3OXFA 5KJKA 5HQ8A 4O30A 4JDSA 4RZ0A 5JJ0A 4QEOA 2JV0A 3M5AA 1H3IA 4IJ8A 4O6FA 3CBOA 4Z4PA 3RAYA 3KMTA 3M56A 5TEGA 3S8PA 3KMJA 4YNDA 3KMAA 3S7DA 4MI0A 2F69A 5ARFA 3M59A 3F9XA 1MVXA 3M55A 3M57A 5JIYA 2QPWA 3K5KA 3OXGA 3RQ4A 5LSZA 5EX0A 5T0MA 1O9SA 3CBPA 2G46A 3FPDA 5TTFA 4YPUA 3N71A 4J8OA 4MI5A 3VV0A 5LSXA 3RU0A 4WUYA 4QENA 5EX3A 5KJLA 3MO0A 4YNPA 5TH7A 4J7IA 3QWWA 2O8JA 3F9YA 4YPEA 1N6CA 3QWVA 4FMUA 2BQZA 3EP0A 5F5EA 5CCLA 4BUPA 5JINA 3MEKA 4I51A 5JHNA 3M54A 2W5YA 1MUFA 1PEGA 1ML9A 2RFIA 3OS5A 4J7FA 4IJDA 3CBMA 3PDNA 2IGQA 1MVHA 3VUZA 5KJMA 5CPRB 4QEPA 2R3AA 3DALA 3F9ZA 3S7JA 3QWPA 5T5GA 2W5ZA 4LDGA 4J83A 3M53A 1ZKKA 3S7FA 1N6AA 4NJ5A 3IHXA 3BO5A 5F6KC 5F6LA 4YNMA 4C1QA 3OXLA 5KJNA 4AU7A 4E47A 3RIBA 3S7BA 1MT6A 3OPEA 4YPAA 1N3JA 5AYFA 3SWCA 3TG4A 4NVQA 3MO5A 3F9WA 5EG2A 3DB5A 5F59A 5CCMA 3OOIA 3MO2A 1XQHA 3M58A 4JLGA 3SW9A 3RJWA 4H12A 5ARGA 3TG5A
chains in the Genus database with same CATH superfamily
5HI7A 3HNAA 5T0KA 3OXFA 5KJKA 5HQ8A 4O30A 4JDSA 4RZ0A 5JJ0A 4QEOA 2JV0A 3M5AA 1H3IA 4IJ8A 4O6FA 3CBOA 4Z4PA 3RAYA 3KMTA 3M56A 5TEGA 3S8PA 3KMJA 4YNDA 3KMAA 3S7DA 4MI0A 2F69A 5ARFA 3M59A 3F9XA 1MVXA 3M55A 3M57A 5JIYA 2QPWA 3K5KA 3OXGA 3RQ4A 5LSZA 5EX0A 5T0MA 1O9SA 3CBPA 2G46A 3FPDA 5TTFA 4YPUA 3N71A 4J8OA 4MI5A 3VV0A 5LSXA 3RU0A 4WUYA 4QENA 5EX3A 5KJLA 3MO0A 4YNPA 5TH7A 4J7IA 3QWWA 2O8JA 3F9YA 4YPEA 1N6CA 3QWVA 4FMUA 2BQZA 3EP0A 5F5EA 5CCLA 4BUPA 5JINA 3MEKA 4I51A 5JHNA 3M54A 2W5YA 1MUFA 1PEGA 1ML9A 2RFIA 3OS5A 4J7FA 4IJDA 3CBMA 3PDNA 2IGQA 1MVHA 3VUZA 5KJMA 5CPRB 4QEPA 2R3AA 3DALA 3F9ZA 3S7JA 3QWPA 5T5GA 2W5ZA 4LDGA 4J83A 3M53A 1ZKKA 3S7FA 1N6AA 4NJ5A 3IHXA 3BO5A 5F6KC 5F6LA 4YNMA 4C1QA 3OXLA 5KJNA 4AU7A 4E47A 3RIBA 3S7BA 1MT6A 3OPEA 4YPAA 1N3JA 5AYFA 3SWCA 3TG4A 4NVQA 3MO5A 3F9WA 5EG2A 3DB5A 5F59A 5CCMA 3OOIA 3MO2A 1XQHA 3M58A 4JLGA 3SW9A 3RJWA 4H12A 5ARGA 3TG5A
chains in the Genus database with same CATH topology
5HI7A 3HNAA 5T0KA 3OXFA 5KJKA 5HQ8A 4O30A 4JDSA 4RZ0A 5JJ0A 4QEOA 2JV0A 3M5AA 1H3IA 4IJ8A 4O6FA 3CBOA 4Z4PA 3RAYA 3KMTA 3M56A 5TEGA 3S8PA 3KMJA 4YNDA 3KMAA 3S7DA 4MI0A 2F69A 5ARFA 3M59A 3F9XA 1MVXA 3M55A 3M57A 5JIYA 2QPWA 3K5KA 3OXGA 3RQ4A 5LSZA 5EX0A 5T0MA 1O9SA 3CBPA 2G46A 3FPDA 5TTFA 4YPUA 3N71A 4J8OA 4MI5A 3VV0A 5LSXA 3RU0A 4WUYA 4QENA 5EX3A 5KJLA 3MO0A 4YNPA 5TH7A 4J7IA 3QWWA 2O8JA 3F9YA 4YPEA 1N6CA 3QWVA 4FMUA 2BQZA 3EP0A 5F5EA 5CCLA 4BUPA 5JINA 3MEKA 4I51A 5JHNA 3M54A 2W5YA 1MUFA 1PEGA 1ML9A 2RFIA 3OS5A 4J7FA 4IJDA 3CBMA 3PDNA 2IGQA 1MVHA 3VUZA 5KJMA 5CPRB 4QEPA 2R3AA 3DALA 3F9ZA 3S7JA 3QWPA 5T5GA 2W5ZA 4LDGA 4J83A 3M53A 1ZKKA 3S7FA 1N6AA 4NJ5A 3IHXA 3BO5A 5F6KC 5F6LA 4YNMA 4C1QA 3OXLA 5KJNA 4AU7A 4E47A 3RIBA 3S7BA 1MT6A 3OPEA 4YPAA 1N3JA 5AYFA 3SWCA 3TG4A 4NVQA 3MO5A 3F9WA 5EG2A 3DB5A 5F59A 5CCMA 3OOIA 3MO2A 1XQHA 3M58A 4JLGA 3SW9A 3RJWA 4H12A 5ARGA 3TG5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HI7 A;  3HNA A;  5T0K A;  3OXF A;  5KJK A;  5HQ8 A;  4O30 A;  4JDS A;  4RZ0 A;  5JJ0 A;  4QEO A;  2JV0 A;  3M5A A;  1H3I A;  4IJ8 A;  4O6F A;  3CBO A;  4Z4P A;  3RAY A;  3KMT A;  3M56 A;  5TEG A;  3S8P A;  3KMJ A;  4YND A;  3KMA A;  3S7D A;  4MI0 A;  2F69 A;  5ARF A;  3M59 A;  3F9X A;  1MVX A;  3M55 A;  3M57 A;  5JIY A;  2QPW A;  3K5K A;  3OXG A;  3RQ4 A;  5LSZ A;  5EX0 A;  5T0M A;  1O9S A;  3CBP A;  2G46 A;  3FPD A;  5TTF A;  4YPU A;  3N71 A;  4J8O A;  4MI5 A;  3VV0 A;  5LSX A;  3RU0 A;  4WUY A;  4QEN A;  5EX3 A;  5KJL A;  3MO0 A;  4YNP A;  5TH7 A;  4J7I A;  3QWW A;  2O8J A;  3F9Y A;  4YPE A;  1N6C A;  3QWV A;  4FMU A;  2BQZ A;  3EP0 A;  5F5E A;  5CCL A;  4BUP A;  5JIN A;  3MEK A;  4I51 A;  5JHN A;  3M54 A;  2W5Y A;  1MUF A;  1PEG A;  1ML9 A;  2RFI A;  3OS5 A;  4J7F A;  4IJD A;  3CBM A;  3PDN A;  2IGQ A;  1MVH A;  3VUZ A;  5KJM A;  5CPR B;  4QEP A;  2R3A A;  3DAL A;  3F9Z A;  3S7J A;  3QWP A;  5T5G A;  2W5Z A;  4LDG A;  4J83 A;  3M53 A;  1ZKK A;  3S7F A;  1N6A A;  4NJ5 A;  3IHX A;  3BO5 A;  5F6K C;  5F6L A;  4YNM A;  4C1Q A;  3OXL A;  5KJN A;  4AU7 A;  4E47 A;  3RIB A;  3S7B A;  1MT6 A;  3OPE A;  4YPA A;  1N3J A;  5AYF A;  3SWC A;  3TG4 A;  4NVQ A;  3MO5 A;  3F9W A;  5EG2 A;  3DB5 A;  5F59 A;  5CCM A;  3OOI A;  3MO2 A;  1XQH A;  3M58 A;  4JLG A;  3SW9 A;  3RJW A;  4H12 A;  5ARG A;  3TG5 A; 
#chains in the Genus database with same CATH topology
 5HI7 A;  3HNA A;  5T0K A;  3OXF A;  5KJK A;  5HQ8 A;  4O30 A;  4JDS A;  4RZ0 A;  5JJ0 A;  4QEO A;  2JV0 A;  3M5A A;  1H3I A;  4IJ8 A;  4O6F A;  3CBO A;  4Z4P A;  3RAY A;  3KMT A;  3M56 A;  5TEG A;  3S8P A;  3KMJ A;  4YND A;  3KMA A;  3S7D A;  4MI0 A;  2F69 A;  5ARF A;  3M59 A;  3F9X A;  1MVX A;  3M55 A;  3M57 A;  5JIY A;  2QPW A;  3K5K A;  3OXG A;  3RQ4 A;  5LSZ A;  5EX0 A;  5T0M A;  1O9S A;  3CBP A;  2G46 A;  3FPD A;  5TTF A;  4YPU A;  3N71 A;  4J8O A;  4MI5 A;  3VV0 A;  5LSX A;  3RU0 A;  4WUY A;  4QEN A;  5EX3 A;  5KJL A;  3MO0 A;  4YNP A;  5TH7 A;  4J7I A;  3QWW A;  2O8J A;  3F9Y A;  4YPE A;  1N6C A;  3QWV A;  4FMU A;  2BQZ A;  3EP0 A;  5F5E A;  5CCL A;  4BUP A;  5JIN A;  3MEK A;  4I51 A;  5JHN A;  3M54 A;  2W5Y A;  1MUF A;  1PEG A;  1ML9 A;  2RFI A;  3OS5 A;  4J7F A;  4IJD A;  3CBM A;  3PDN A;  2IGQ A;  1MVH A;  3VUZ A;  5KJM A;  5CPR B;  4QEP A;  2R3A A;  3DAL A;  3F9Z A;  3S7J A;  3QWP A;  5T5G A;  2W5Z A;  4LDG A;  4J83 A;  3M53 A;  1ZKK A;  3S7F A;  1N6A A;  4NJ5 A;  3IHX A;  3BO5 A;  5F6K C;  5F6L A;  4YNM A;  4C1Q A;  3OXL A;  5KJN A;  4AU7 A;  4E47 A;  3RIB A;  3S7B A;  1MT6 A;  3OPE A;  4YPA A;  1N3J A;  5AYF A;  3SWC A;  3TG4 A;  4NVQ A;  3MO5 A;  3F9W A;  5EG2 A;  3DB5 A;  5F59 A;  5CCM A;  3OOI A;  3MO2 A;  1XQH A;  3M58 A;  4JLG A;  3SW9 A;  3RJW A;  4H12 A;  5ARG A;  3TG5 A; 
#chains in the Genus database with same CATH homology
 5HI7 A;  3HNA A;  5T0K A;  3OXF A;  5KJK A;  5HQ8 A;  4O30 A;  4JDS A;  4RZ0 A;  5JJ0 A;  4QEO A;  2JV0 A;  3M5A A;  1H3I A;  4IJ8 A;  4O6F A;  3CBO A;  4Z4P A;  3RAY A;  3KMT A;  3M56 A;  5TEG A;  3S8P A;  3KMJ A;  4YND A;  3KMA A;  3S7D A;  4MI0 A;  2F69 A;  5ARF A;  3M59 A;  3F9X A;  1MVX A;  3M55 A;  3M57 A;  5JIY A;  2QPW A;  3K5K A;  3OXG A;  3RQ4 A;  5LSZ A;  5EX0 A;  5T0M A;  1O9S A;  3CBP A;  2G46 A;  3FPD A;  5TTF A;  4YPU A;  3N71 A;  4J8O A;  4MI5 A;  3VV0 A;  5LSX A;  3RU0 A;  4WUY A;  4QEN A;  5EX3 A;  5KJL A;  3MO0 A;  4YNP A;  5TH7 A;  4J7I A;  3QWW A;  2O8J A;  3F9Y A;  4YPE A;  1N6C A;  3QWV A;  4FMU A;  2BQZ A;  3EP0 A;  5F5E A;  5CCL A;  4BUP A;  5JIN A;  3MEK A;  4I51 A;  5JHN A;  3M54 A;  2W5Y A;  1MUF A;  1PEG A;  1ML9 A;  2RFI A;  3OS5 A;  4J7F A;  4IJD A;  3CBM A;  3PDN A;  2IGQ A;  1MVH A;  3VUZ A;  5KJM A;  5CPR B;  4QEP A;  2R3A A;  3DAL A;  3F9Z A;  3S7J A;  3QWP A;  5T5G A;  2W5Z A;  4LDG A;  4J83 A;  3M53 A;  1ZKK A;  3S7F A;  1N6A A;  4NJ5 A;  3IHX A;  3BO5 A;  5F6K C;  5F6L A;  4YNM A;  4C1Q A;  3OXL A;  5KJN A;  4AU7 A;  4E47 A;  3RIB A;  3S7B A;  1MT6 A;  3OPE A;  4YPA A;  1N3J A;  5AYF A;  3SWC A;  3TG4 A;  4NVQ A;  3MO5 A;  3F9W A;  5EG2 A;  3DB5 A;  5F59 A;  5CCM A;  3OOI A;  3MO2 A;  1XQH A;  3M58 A;  4JLG A;  3SW9 A;  3RJW A;  4H12 A;  5ARG A;  3TG5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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