5JINA

Structure of g9a set-domain with histone h3k9m mutant peptide and bound s-adenosylmethionine
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
273
structure length
273
Chain Sequence
b'IRTEKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDCSSSNCLCGQLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVREDDSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCKHSAEAIALEQSR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title S-adenosyl methionine is necessary for inhibition of the methyltransferase G9a by the lysine 9 to methionine mutation on histone H3.
pubmed doi rcsb
molecule keywords Histone-lysine N-methyltransferase EHMT2
source organism Homo sapiens
molecule tags Transferase
total genus 77
structure length 273
sequence length 273
chains with identical sequence B
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2016-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 5jinA00
2F69A 3SWCA 1ML9A 3QWWA 3OS5A 3KMTA 4QEPA 4JDSA 5HI7A 5CCLA 4J83A 3VV0A 3F9XA 3OXGA 3CBMA 3FPDA 1N6CA 2G46A 3MO0A 4O30A 5T0MA 3VUZA 3M58A 3TG5A 4YNMA 2IGQA 4J8OA 4MI0A 3M59A 3CBOA 4YPUA 4YPEA 2BQZA 3KMJA 3MO5A 3S7BA 3OPEA 4BUPA 3RAYA 1N6AA 4I51A 3K5KA 4LDGA 3OXLA 1PEGA 4E47A 3OXFA 3QWPA 2JV0A 4Z4PA 5JIYA 3F9WA 5T0KA 4AU7A 3EP0A 4YPAA 1ZKKA 5AYFA 1MVHA 4NJ5A 4YNDA 5EX3A 4O6FA 5EX0A 3F9YA 3PDNA 3OOIA 4H12A 1MT6A 5KJKA 3IHXA 3M54A 4IJDA 5JHNA 4MI5A 3DALA 1MVXA 2RFIA 3RQ4A 1H3IA 5F5EA 2W5YA 1N3JA 3KMAA 3M53A 5CCMA 4RZ0A 3M55A 3QWVA 3S7DA 5KJNA 4J7IA 3S7JA 3RIBA 2QPWA 3F9ZA 4J7FA 3S7FA 1MUFA 3MO2A 4WUYA 3M5AA 3CBPA 4QEOA 3TG4A 4FMUA 5KJMA 5LSZA 5CPRB 3SW9A 2O8JA 2W5ZA 3M57A 5F6KC 1O9SA 5KJLA 4IJ8A 5TEGA 3HNAA 4QENA 5EG2A 3DB5A 5LSXA 3RU0A 5F6LA 5ARFA 5HQ8A 5JJ0A 3MEKA 3S8PA 4JLGA 5TTFA 2R3AA 4YNPA 3M56A 5TH7A 5F59A 4C1QA 3BO5A 1XQHA 3RJWA 4NVQA 5ARGA 5T5GA 5JINA 3N71A
chains in the Genus database with same CATH superfamily
2F69A 3SWCA 1ML9A 3QWWA 3OS5A 3KMTA 4QEPA 4JDSA 5HI7A 5CCLA 4J83A 3VV0A 3F9XA 3OXGA 3CBMA 3FPDA 1N6CA 2G46A 3MO0A 4O30A 5T0MA 3VUZA 3M58A 3TG5A 4YNMA 2IGQA 4J8OA 4MI0A 3M59A 3CBOA 4YPUA 4YPEA 2BQZA 3KMJA 3MO5A 3S7BA 3OPEA 4BUPA 3RAYA 1N6AA 4I51A 3K5KA 4LDGA 3OXLA 1PEGA 4E47A 3OXFA 3QWPA 2JV0A 4Z4PA 5JIYA 3F9WA 5T0KA 4AU7A 3EP0A 4YPAA 1ZKKA 5AYFA 1MVHA 4NJ5A 4YNDA 5EX3A 4O6FA 5EX0A 3F9YA 3PDNA 3OOIA 4H12A 1MT6A 5KJKA 3IHXA 3M54A 4IJDA 5JHNA 4MI5A 3DALA 1MVXA 2RFIA 3RQ4A 1H3IA 5F5EA 2W5YA 1N3JA 3KMAA 3M53A 5CCMA 4RZ0A 3M55A 3QWVA 3S7DA 5KJNA 4J7IA 3S7JA 3RIBA 2QPWA 3F9ZA 4J7FA 3S7FA 1MUFA 3MO2A 4WUYA 3M5AA 3CBPA 4QEOA 3TG4A 4FMUA 5KJMA 5LSZA 5CPRB 3SW9A 2O8JA 2W5ZA 3M57A 5F6KC 1O9SA 5KJLA 4IJ8A 5TEGA 3HNAA 4QENA 5EG2A 3DB5A 5LSXA 3RU0A 5F6LA 5ARFA 5HQ8A 5JJ0A 3MEKA 3S8PA 4JLGA 5TTFA 2R3AA 4YNPA 3M56A 5TH7A 5F59A 4C1QA 3BO5A 1XQHA 3RJWA 4NVQA 5ARGA 5T5GA 5JINA 3N71A
chains in the Genus database with same CATH topology
2F69A 3SWCA 1ML9A 3QWWA 3OS5A 3KMTA 4QEPA 4JDSA 5HI7A 5CCLA 4J83A 3VV0A 3F9XA 3OXGA 3CBMA 3FPDA 1N6CA 2G46A 3MO0A 4O30A 5T0MA 3VUZA 3M58A 3TG5A 4YNMA 2IGQA 4J8OA 4MI0A 3M59A 3CBOA 4YPUA 4YPEA 2BQZA 3KMJA 3MO5A 3S7BA 3OPEA 4BUPA 3RAYA 1N6AA 4I51A 3K5KA 4LDGA 3OXLA 1PEGA 4E47A 3OXFA 3QWPA 2JV0A 4Z4PA 5JIYA 3F9WA 5T0KA 4AU7A 3EP0A 4YPAA 1ZKKA 5AYFA 1MVHA 4NJ5A 4YNDA 5EX3A 4O6FA 5EX0A 3F9YA 3PDNA 3OOIA 4H12A 1MT6A 5KJKA 3IHXA 3M54A 4IJDA 5JHNA 4MI5A 3DALA 1MVXA 2RFIA 3RQ4A 1H3IA 5F5EA 2W5YA 1N3JA 3KMAA 3M53A 5CCMA 4RZ0A 3M55A 3QWVA 3S7DA 5KJNA 4J7IA 3S7JA 3RIBA 2QPWA 3F9ZA 4J7FA 3S7FA 1MUFA 3MO2A 4WUYA 3M5AA 3CBPA 4QEOA 3TG4A 4FMUA 5KJMA 5LSZA 5CPRB 3SW9A 2O8JA 2W5ZA 3M57A 5F6KC 1O9SA 5KJLA 4IJ8A 5TEGA 3HNAA 4QENA 5EG2A 3DB5A 5LSXA 3RU0A 5F6LA 5ARFA 5HQ8A 5JJ0A 3MEKA 3S8PA 4JLGA 5TTFA 2R3AA 4YNPA 3M56A 5TH7A 5F59A 4C1QA 3BO5A 1XQHA 3RJWA 4NVQA 5ARGA 5T5GA 5JINA 3N71A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F69 A;  3SWC A;  1ML9 A;  3QWW A;  3OS5 A;  3KMT A;  4QEP A;  4JDS A;  5HI7 A;  5CCL A;  4J83 A;  3VV0 A;  3F9X A;  3OXG A;  3CBM A;  3FPD A;  1N6C A;  2G46 A;  3MO0 A;  4O30 A;  5T0M A;  3VUZ A;  3M58 A;  3TG5 A;  4YNM A;  2IGQ A;  4J8O A;  4MI0 A;  3M59 A;  3CBO A;  4YPU A;  4YPE A;  2BQZ A;  3KMJ A;  3MO5 A;  3S7B A;  3OPE A;  4BUP A;  3RAY A;  1N6A A;  4I51 A;  3K5K A;  4LDG A;  3OXL A;  1PEG A;  4E47 A;  3OXF A;  3QWP A;  2JV0 A;  4Z4P A;  5JIY A;  3F9W A;  5T0K A;  4AU7 A;  3EP0 A;  4YPA A;  1ZKK A;  5AYF A;  1MVH A;  4NJ5 A;  4YND A;  5EX3 A;  4O6F A;  5EX0 A;  3F9Y A;  3PDN A;  3OOI A;  4H12 A;  1MT6 A;  5KJK A;  3IHX A;  3M54 A;  4IJD A;  5JHN A;  4MI5 A;  3DAL A;  1MVX A;  2RFI A;  3RQ4 A;  1H3I A;  5F5E A;  2W5Y A;  1N3J A;  3KMA A;  3M53 A;  5CCM A;  4RZ0 A;  3M55 A;  3QWV A;  3S7D A;  5KJN A;  4J7I A;  3S7J A;  3RIB A;  2QPW A;  3F9Z A;  4J7F A;  3S7F A;  1MUF A;  3MO2 A;  4WUY A;  3M5A A;  3CBP A;  4QEO A;  3TG4 A;  4FMU A;  5KJM A;  5LSZ A;  5CPR B;  3SW9 A;  2O8J A;  2W5Z A;  3M57 A;  5F6K C;  1O9S A;  5KJL A;  4IJ8 A;  5TEG A;  3HNA A;  4QEN A;  5EG2 A;  3DB5 A;  5LSX A;  3RU0 A;  5F6L A;  5ARF A;  5HQ8 A;  5JJ0 A;  3MEK A;  3S8P A;  4JLG A;  5TTF A;  2R3A A;  4YNP A;  3M56 A;  5TH7 A;  5F59 A;  4C1Q A;  3BO5 A;  1XQH A;  3RJW A;  4NVQ A;  5ARG A;  5T5G A;  5JIN A;  3N71 A; 
#chains in the Genus database with same CATH topology
 2F69 A;  3SWC A;  1ML9 A;  3QWW A;  3OS5 A;  3KMT A;  4QEP A;  4JDS A;  5HI7 A;  5CCL A;  4J83 A;  3VV0 A;  3F9X A;  3OXG A;  3CBM A;  3FPD A;  1N6C A;  2G46 A;  3MO0 A;  4O30 A;  5T0M A;  3VUZ A;  3M58 A;  3TG5 A;  4YNM A;  2IGQ A;  4J8O A;  4MI0 A;  3M59 A;  3CBO A;  4YPU A;  4YPE A;  2BQZ A;  3KMJ A;  3MO5 A;  3S7B A;  3OPE A;  4BUP A;  3RAY A;  1N6A A;  4I51 A;  3K5K A;  4LDG A;  3OXL A;  1PEG A;  4E47 A;  3OXF A;  3QWP A;  2JV0 A;  4Z4P A;  5JIY A;  3F9W A;  5T0K A;  4AU7 A;  3EP0 A;  4YPA A;  1ZKK A;  5AYF A;  1MVH A;  4NJ5 A;  4YND A;  5EX3 A;  4O6F A;  5EX0 A;  3F9Y A;  3PDN A;  3OOI A;  4H12 A;  1MT6 A;  5KJK A;  3IHX A;  3M54 A;  4IJD A;  5JHN A;  4MI5 A;  3DAL A;  1MVX A;  2RFI A;  3RQ4 A;  1H3I A;  5F5E A;  2W5Y A;  1N3J A;  3KMA A;  3M53 A;  5CCM A;  4RZ0 A;  3M55 A;  3QWV A;  3S7D A;  5KJN A;  4J7I A;  3S7J A;  3RIB A;  2QPW A;  3F9Z A;  4J7F A;  3S7F A;  1MUF A;  3MO2 A;  4WUY A;  3M5A A;  3CBP A;  4QEO A;  3TG4 A;  4FMU A;  5KJM A;  5LSZ A;  5CPR B;  3SW9 A;  2O8J A;  2W5Z A;  3M57 A;  5F6K C;  1O9S A;  5KJL A;  4IJ8 A;  5TEG A;  3HNA A;  4QEN A;  5EG2 A;  3DB5 A;  5LSX A;  3RU0 A;  5F6L A;  5ARF A;  5HQ8 A;  5JJ0 A;  3MEK A;  3S8P A;  4JLG A;  5TTF A;  2R3A A;  4YNP A;  3M56 A;  5TH7 A;  5F59 A;  4C1Q A;  3BO5 A;  1XQH A;  3RJW A;  4NVQ A;  5ARG A;  5T5G A;  5JIN A;  3N71 A; 
#chains in the Genus database with same CATH homology
 2F69 A;  3SWC A;  1ML9 A;  3QWW A;  3OS5 A;  3KMT A;  4QEP A;  4JDS A;  5HI7 A;  5CCL A;  4J83 A;  3VV0 A;  3F9X A;  3OXG A;  3CBM A;  3FPD A;  1N6C A;  2G46 A;  3MO0 A;  4O30 A;  5T0M A;  3VUZ A;  3M58 A;  3TG5 A;  4YNM A;  2IGQ A;  4J8O A;  4MI0 A;  3M59 A;  3CBO A;  4YPU A;  4YPE A;  2BQZ A;  3KMJ A;  3MO5 A;  3S7B A;  3OPE A;  4BUP A;  3RAY A;  1N6A A;  4I51 A;  3K5K A;  4LDG A;  3OXL A;  1PEG A;  4E47 A;  3OXF A;  3QWP A;  2JV0 A;  4Z4P A;  5JIY A;  3F9W A;  5T0K A;  4AU7 A;  3EP0 A;  4YPA A;  1ZKK A;  5AYF A;  1MVH A;  4NJ5 A;  4YND A;  5EX3 A;  4O6F A;  5EX0 A;  3F9Y A;  3PDN A;  3OOI A;  4H12 A;  1MT6 A;  5KJK A;  3IHX A;  3M54 A;  4IJD A;  5JHN A;  4MI5 A;  3DAL A;  1MVX A;  2RFI A;  3RQ4 A;  1H3I A;  5F5E A;  2W5Y A;  1N3J A;  3KMA A;  3M53 A;  5CCM A;  4RZ0 A;  3M55 A;  3QWV A;  3S7D A;  5KJN A;  4J7I A;  3S7J A;  3RIB A;  2QPW A;  3F9Z A;  4J7F A;  3S7F A;  1MUF A;  3MO2 A;  4WUY A;  3M5A A;  3CBP A;  4QEO A;  3TG4 A;  4FMU A;  5KJM A;  5LSZ A;  5CPR B;  3SW9 A;  2O8J A;  2W5Z A;  3M57 A;  5F6K C;  1O9S A;  5KJL A;  4IJ8 A;  5TEG A;  3HNA A;  4QEN A;  5EG2 A;  3DB5 A;  5LSX A;  3RU0 A;  5F6L A;  5ARF A;  5HQ8 A;  5JJ0 A;  3MEK A;  3S8P A;  4JLG A;  5TTF A;  2R3A A;  4YNP A;  3M56 A;  5TH7 A;  5F59 A;  4C1Q A;  3BO5 A;  1XQH A;  3RJW A;  4NVQ A;  5ARG A;  5T5G A;  5JIN A;  3N71 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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