3KMAA

Crystal structure of vset under condition a
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
105
structure length
105
Chain Sequence
MFNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDYLFSRKNMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords A612L protein
publication title Dimerization of a viral SET protein endows its function.
pubmed doi rcsb
total genus 23
structure length 105
sequence length 105
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-11-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 3kmaA00
3M57A 5KJMA 3RQ4A 4IJ8A 1MVXA 4JLGA 3OXGA 5KJKA 3MO0A 3QWVA 3OXLA 3TG4A 4H12A 3CBOA 4WUYA 3QWWA 4QEOA 1H3IA 3FPDA 4AU7A 1N6AA 3RIBA 2G46A 4MI5A 3VUZA 5ARFA 1MVHA 3OXFA 3K5KA 2IGQA 3M53A 5TEGA 4O6FA 1N3JA 5TTFA 4QENA 5HQ8A 3M5AA 5F6LA 5T0KA 2BQZA 4QEPA 5EG2A 5JIYA 2F69A 3KMAA 3S7BA 3EP0A 3MEKA 3M55A 3MO2A 4Z4PA 3S8PA 5F59A 4C1QA 1XQHA 5CPRB 3CBPA 3OS5A 3S7DA 5ARGA 4LDGA 4J7FA 3N71A 3M56A 3BO5A 3IHXA 3OOIA 4YNPA 5TH7A 4E47A 5JINA 3SWCA 5AYFA 4I51A 5KJLA 3F9WA 5T0MA 3KMTA 3RAYA 2R3AA 5JHNA 5F5EA 3MO5A 3PDNA 3S7JA 3OPEA 3F9XA 3VV0A 3CBMA 3SW9A 5EX0A 3KMJA 4J8OA 3HNAA 5EX3A 5JJ0A 3M58A 1MT6A 4JDSA 2W5ZA 4IJDA 2QPWA 3QWPA 4MI0A 1MUFA 2O8JA 5KJNA 3S7FA 1ZKKA 4O30A 4YNMA 4BUPA 2JV0A 3F9YA 1ML9A 2W5YA 3RU0A 5LSXA 5CCLA 3TG5A 1N6CA 3M54A 3DALA 5CCMA 4YNDA 1O9SA 4RZ0A 4YPAA 3M59A 5HI7A 3DB5A 1PEGA 5T5GA 4J83A 2RFIA 3F9ZA 4J7IA 4YPEA 5LSZA 3RJWA 4YPUA 4FMUA 5F6KC 4NJ5A 4NVQA
chains in the Genus database with same CATH superfamily
3M57A 5KJMA 3RQ4A 4IJ8A 1MVXA 4JLGA 3OXGA 5KJKA 3MO0A 3QWVA 3OXLA 3TG4A 4H12A 3CBOA 4WUYA 3QWWA 4QEOA 1H3IA 3FPDA 4AU7A 1N6AA 3RIBA 2G46A 4MI5A 3VUZA 5ARFA 1MVHA 3OXFA 3K5KA 2IGQA 3M53A 5TEGA 4O6FA 1N3JA 5TTFA 4QENA 5HQ8A 3M5AA 5F6LA 5T0KA 2BQZA 4QEPA 5EG2A 5JIYA 2F69A 3KMAA 3S7BA 3EP0A 3MEKA 3M55A 3MO2A 4Z4PA 3S8PA 5F59A 4C1QA 1XQHA 5CPRB 3CBPA 3OS5A 3S7DA 5ARGA 4LDGA 4J7FA 3N71A 3M56A 3BO5A 3IHXA 3OOIA 4YNPA 5TH7A 4E47A 5JINA 3SWCA 5AYFA 4I51A 5KJLA 3F9WA 5T0MA 3KMTA 3RAYA 2R3AA 5JHNA 5F5EA 3MO5A 3PDNA 3S7JA 3OPEA 3F9XA 3VV0A 3CBMA 3SW9A 5EX0A 3KMJA 4J8OA 3HNAA 5EX3A 5JJ0A 3M58A 1MT6A 4JDSA 2W5ZA 4IJDA 2QPWA 3QWPA 4MI0A 1MUFA 2O8JA 5KJNA 3S7FA 1ZKKA 4O30A 4YNMA 4BUPA 2JV0A 3F9YA 1ML9A 2W5YA 3RU0A 5LSXA 5CCLA 3TG5A 1N6CA 3M54A 3DALA 5CCMA 4YNDA 1O9SA 4RZ0A 4YPAA 3M59A 5HI7A 3DB5A 1PEGA 5T5GA 4J83A 2RFIA 3F9ZA 4J7IA 4YPEA 5LSZA 3RJWA 4YPUA 4FMUA 5F6KC 4NJ5A 4NVQA
chains in the Genus database with same CATH topology
3M57A 5KJMA 3RQ4A 4IJ8A 1MVXA 4JLGA 3OXGA 5KJKA 3MO0A 3QWVA 3OXLA 3TG4A 4H12A 3CBOA 4WUYA 3QWWA 4QEOA 1H3IA 3FPDA 4AU7A 1N6AA 3RIBA 2G46A 4MI5A 3VUZA 5ARFA 1MVHA 3OXFA 3K5KA 2IGQA 3M53A 5TEGA 4O6FA 1N3JA 5TTFA 4QENA 5HQ8A 3M5AA 5F6LA 5T0KA 2BQZA 4QEPA 5EG2A 5JIYA 2F69A 3KMAA 3S7BA 3EP0A 3MEKA 3M55A 3MO2A 4Z4PA 3S8PA 5F59A 4C1QA 1XQHA 5CPRB 3CBPA 3OS5A 3S7DA 5ARGA 4LDGA 4J7FA 3N71A 3M56A 3BO5A 3IHXA 3OOIA 4YNPA 5TH7A 4E47A 5JINA 3SWCA 5AYFA 4I51A 5KJLA 3F9WA 5T0MA 3KMTA 3RAYA 2R3AA 5JHNA 5F5EA 3MO5A 3PDNA 3S7JA 3OPEA 3F9XA 3VV0A 3CBMA 3SW9A 5EX0A 3KMJA 4J8OA 3HNAA 5EX3A 5JJ0A 3M58A 1MT6A 4JDSA 2W5ZA 4IJDA 2QPWA 3QWPA 4MI0A 1MUFA 2O8JA 5KJNA 3S7FA 1ZKKA 4O30A 4YNMA 4BUPA 2JV0A 3F9YA 1ML9A 2W5YA 3RU0A 5LSXA 5CCLA 3TG5A 1N6CA 3M54A 3DALA 5CCMA 4YNDA 1O9SA 4RZ0A 4YPAA 3M59A 5HI7A 3DB5A 1PEGA 5T5GA 4J83A 2RFIA 3F9ZA 4J7IA 4YPEA 5LSZA 3RJWA 4YPUA 4FMUA 5F6KC 4NJ5A 4NVQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M57 A;  5KJM A;  3RQ4 A;  4IJ8 A;  1MVX A;  4JLG A;  3OXG A;  5KJK A;  3MO0 A;  3QWV A;  3OXL A;  3TG4 A;  4H12 A;  3CBO A;  4WUY A;  3QWW A;  4QEO A;  1H3I A;  3FPD A;  4AU7 A;  1N6A A;  3RIB A;  2G46 A;  4MI5 A;  3VUZ A;  5ARF A;  1MVH A;  3OXF A;  3K5K A;  2IGQ A;  3M53 A;  5TEG A;  4O6F A;  1N3J A;  5TTF A;  4QEN A;  5HQ8 A;  3M5A A;  5F6L A;  5T0K A;  2BQZ A;  4QEP A;  5EG2 A;  5JIY A;  2F69 A;  3KMA A;  3S7B A;  3EP0 A;  3MEK A;  3M55 A;  3MO2 A;  4Z4P A;  3S8P A;  5F59 A;  4C1Q A;  1XQH A;  5CPR B;  3CBP A;  3OS5 A;  3S7D A;  5ARG A;  4LDG A;  4J7F A;  3N71 A;  3M56 A;  3BO5 A;  3IHX A;  3OOI A;  4YNP A;  5TH7 A;  4E47 A;  5JIN A;  3SWC A;  5AYF A;  4I51 A;  5KJL A;  3F9W A;  5T0M A;  3KMT A;  3RAY A;  2R3A A;  5JHN A;  5F5E A;  3MO5 A;  3PDN A;  3S7J A;  3OPE A;  3F9X A;  3VV0 A;  3CBM A;  3SW9 A;  5EX0 A;  3KMJ A;  4J8O A;  3HNA A;  5EX3 A;  5JJ0 A;  3M58 A;  1MT6 A;  4JDS A;  2W5Z A;  4IJD A;  2QPW A;  3QWP A;  4MI0 A;  1MUF A;  2O8J A;  5KJN A;  3S7F A;  1ZKK A;  4O30 A;  4YNM A;  4BUP A;  2JV0 A;  3F9Y A;  1ML9 A;  2W5Y A;  3RU0 A;  5LSX A;  5CCL A;  3TG5 A;  1N6C A;  3M54 A;  3DAL A;  5CCM A;  4YND A;  1O9S A;  4RZ0 A;  4YPA A;  3M59 A;  5HI7 A;  3DB5 A;  1PEG A;  5T5G A;  4J83 A;  2RFI A;  3F9Z A;  4J7I A;  4YPE A;  5LSZ A;  3RJW A;  4YPU A;  4FMU A;  5F6K C;  4NJ5 A;  4NVQ A; 
#chains in the Genus database with same CATH topology
 3M57 A;  5KJM A;  3RQ4 A;  4IJ8 A;  1MVX A;  4JLG A;  3OXG A;  5KJK A;  3MO0 A;  3QWV A;  3OXL A;  3TG4 A;  4H12 A;  3CBO A;  4WUY A;  3QWW A;  4QEO A;  1H3I A;  3FPD A;  4AU7 A;  1N6A A;  3RIB A;  2G46 A;  4MI5 A;  3VUZ A;  5ARF A;  1MVH A;  3OXF A;  3K5K A;  2IGQ A;  3M53 A;  5TEG A;  4O6F A;  1N3J A;  5TTF A;  4QEN A;  5HQ8 A;  3M5A A;  5F6L A;  5T0K A;  2BQZ A;  4QEP A;  5EG2 A;  5JIY A;  2F69 A;  3KMA A;  3S7B A;  3EP0 A;  3MEK A;  3M55 A;  3MO2 A;  4Z4P A;  3S8P A;  5F59 A;  4C1Q A;  1XQH A;  5CPR B;  3CBP A;  3OS5 A;  3S7D A;  5ARG A;  4LDG A;  4J7F A;  3N71 A;  3M56 A;  3BO5 A;  3IHX A;  3OOI A;  4YNP A;  5TH7 A;  4E47 A;  5JIN A;  3SWC A;  5AYF A;  4I51 A;  5KJL A;  3F9W A;  5T0M A;  3KMT A;  3RAY A;  2R3A A;  5JHN A;  5F5E A;  3MO5 A;  3PDN A;  3S7J A;  3OPE A;  3F9X A;  3VV0 A;  3CBM A;  3SW9 A;  5EX0 A;  3KMJ A;  4J8O A;  3HNA A;  5EX3 A;  5JJ0 A;  3M58 A;  1MT6 A;  4JDS A;  2W5Z A;  4IJD A;  2QPW A;  3QWP A;  4MI0 A;  1MUF A;  2O8J A;  5KJN A;  3S7F A;  1ZKK A;  4O30 A;  4YNM A;  4BUP A;  2JV0 A;  3F9Y A;  1ML9 A;  2W5Y A;  3RU0 A;  5LSX A;  5CCL A;  3TG5 A;  1N6C A;  3M54 A;  3DAL A;  5CCM A;  4YND A;  1O9S A;  4RZ0 A;  4YPA A;  3M59 A;  5HI7 A;  3DB5 A;  1PEG A;  5T5G A;  4J83 A;  2RFI A;  3F9Z A;  4J7I A;  4YPE A;  5LSZ A;  3RJW A;  4YPU A;  4FMU A;  5F6K C;  4NJ5 A;  4NVQ A; 
#chains in the Genus database with same CATH homology
 3M57 A;  5KJM A;  3RQ4 A;  4IJ8 A;  1MVX A;  4JLG A;  3OXG A;  5KJK A;  3MO0 A;  3QWV A;  3OXL A;  3TG4 A;  4H12 A;  3CBO A;  4WUY A;  3QWW A;  4QEO A;  1H3I A;  3FPD A;  4AU7 A;  1N6A A;  3RIB A;  2G46 A;  4MI5 A;  3VUZ A;  5ARF A;  1MVH A;  3OXF A;  3K5K A;  2IGQ A;  3M53 A;  5TEG A;  4O6F A;  1N3J A;  5TTF A;  4QEN A;  5HQ8 A;  3M5A A;  5F6L A;  5T0K A;  2BQZ A;  4QEP A;  5EG2 A;  5JIY A;  2F69 A;  3KMA A;  3S7B A;  3EP0 A;  3MEK A;  3M55 A;  3MO2 A;  4Z4P A;  3S8P A;  5F59 A;  4C1Q A;  1XQH A;  5CPR B;  3CBP A;  3OS5 A;  3S7D A;  5ARG A;  4LDG A;  4J7F A;  3N71 A;  3M56 A;  3BO5 A;  3IHX A;  3OOI A;  4YNP A;  5TH7 A;  4E47 A;  5JIN A;  3SWC A;  5AYF A;  4I51 A;  5KJL A;  3F9W A;  5T0M A;  3KMT A;  3RAY A;  2R3A A;  5JHN A;  5F5E A;  3MO5 A;  3PDN A;  3S7J A;  3OPE A;  3F9X A;  3VV0 A;  3CBM A;  3SW9 A;  5EX0 A;  3KMJ A;  4J8O A;  3HNA A;  5EX3 A;  5JJ0 A;  3M58 A;  1MT6 A;  4JDS A;  2W5Z A;  4IJD A;  2QPW A;  3QWP A;  4MI0 A;  1MUF A;  2O8J A;  5KJN A;  3S7F A;  1ZKK A;  4O30 A;  4YNM A;  4BUP A;  2JV0 A;  3F9Y A;  1ML9 A;  2W5Y A;  3RU0 A;  5LSX A;  5CCL A;  3TG5 A;  1N6C A;  3M54 A;  3DAL A;  5CCM A;  4YND A;  1O9S A;  4RZ0 A;  4YPA A;  3M59 A;  5HI7 A;  3DB5 A;  1PEG A;  5T5G A;  4J83 A;  2RFI A;  3F9Z A;  4J7I A;  4YPE A;  5LSZ A;  3RJW A;  4YPU A;  4FMU A;  5F6K C;  4NJ5 A;  4NVQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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