4QEOA

Crystal structure of kryptonite in complex with mchh dna, h3(1-15) peptide and sah
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
526
structure length
472
Chain Sequence
LEPHLKVTKCLRLFNKQYLLCVQAKLSRPDLKGVTEMIKAKAILYPRKIIGDLPGIDVGHRFFSRAEMCAVGFHNHWLNGIDYMSMEYEKEYSNYKLPLAVSIVMSGQYEDDLDNADTVTYTGQGGHNLTGNKRQIKDQLLERGNLALKHCCEYNVPVRVTRGHNCKSSYTKRVYTYDGLYKVEKFWAQKGVSGFTVYKYRLKRLEGQPELTTDIEGLVCEDISGGLEFKGIPATNRVDDSPVSPTSGFTYIKSLIIEPNVIIPKSSTGCNCRGSCTDSKKCACAKLNGGNFPYVDLNDGRLIESRDVVFECGPHCGCGPKCVNRTSQKRLRFNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRRTADVNEYIFEIDCPEFCIDAGSTGNFARFINHSCEPNLFVQCVLSSHQDIRLARVVLFAADNISPMQELTYDYGYALDSVHGPDGKVKQLACYCGALNCRKRLY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
source organism Arabidopsis thaliana
publication title Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE.
pubmed doi rcsb
molecule keywords Histone-lysine N-methyltransferase, H3 lysine-9 specific SUV
total genus 139
structure length 472
sequence length 526
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2014-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF02182 SAD_SRA SAD/SRA domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 4qeoA03
4JLGA 3BO5A 3VUZA 1MUFA 5EX3A 5F6LA 1MVHA 5AYFA 4I51A 4J83A 3K5KA 3RU0A 4J7FA 5KJMA 5KJKA 5CPRB 3CBPA 5HI7A 1N6AA 3M58A 4YNPA 3OOIA 5CCLA 1ML9A 1MVXA 4YPAA 5F6KC 3CBOA 3M56A 5TH7A 3SW9A 5F59A 5TEGA 3M57A 3KMTA 4NJ5A 5CCMA 5LSZA 3MO0A 5JJ0A 3FPDA 1PEGA 4AU7A 4E47A 5EX0A 5T5GA 3IHXA 3S7JA 2G46A 4QEOA 3PDNA 2QPWA 2W5YA 2W5ZA 1ZKKA 4YPEA 3HNAA 3F9WA 3RJWA 3DB5A 2IGQA 3OS5A 3EP0A 5ARFA 4IJDA 5JIYA 3MO5A 2O8JA 5KJNA 3DALA 3QWPA 4LDGA 5LSXA 3RIBA 4QEPA 3TG5A 4BUPA 3OXLA 4YNMA 5T0MA 3OXFA 3M54A 3M59A 3CBMA 3RQ4A 5JINA 3KMJA 3F9YA 1N6CA 4MI0A 5ARGA 5KJLA 4H12A 3OPEA 3N71A 4C1QA 4O6FA 2JV0A 4J8OA 4YPUA 2RFIA 5F5EA 1H3IA 3SWCA 3OXGA 5HQ8A 4QENA 5TTFA 5JHNA 3S7DA 4IJ8A 3S7BA 3RAYA 4YNDA 3F9ZA 3QWVA 1MT6A 3QWWA 3MO2A 4RZ0A 4JDSA 3S7FA 3M53A 4NVQA 2R3AA 3M5AA 3TG4A 3MEKA 5EG2A 4O30A 3M55A 3F9XA 4J7IA 1XQHA 4MI5A 2BQZA 3KMAA 3S8PA 5T0KA 3VV0A 2F69A 1N3JA 1O9SA 4Z4PA 4WUYA 4FMUA
chains in the Genus database with same CATH superfamily
4JLGA 3BO5A 3VUZA 1MUFA 5EX3A 5F6LA 1MVHA 5AYFA 4I51A 4J83A 3K5KA 3RU0A 4J7FA 5KJMA 5KJKA 5CPRB 3CBPA 5HI7A 1N6AA 3M58A 4YNPA 3OOIA 5CCLA 1ML9A 1MVXA 4YPAA 5F6KC 3CBOA 3M56A 5TH7A 3SW9A 5F59A 5TEGA 3M57A 3KMTA 4NJ5A 5CCMA 5LSZA 3MO0A 5JJ0A 3FPDA 1PEGA 4AU7A 4E47A 5EX0A 5T5GA 3IHXA 3S7JA 2G46A 4QEOA 3PDNA 2QPWA 2W5YA 2W5ZA 1ZKKA 4YPEA 3HNAA 3F9WA 3RJWA 3DB5A 2IGQA 3OS5A 3EP0A 5ARFA 4IJDA 5JIYA 3MO5A 2O8JA 5KJNA 3DALA 3QWPA 4LDGA 5LSXA 3RIBA 4QEPA 3TG5A 4BUPA 3OXLA 4YNMA 5T0MA 3OXFA 3M54A 3M59A 3CBMA 3RQ4A 5JINA 3KMJA 3F9YA 1N6CA 4MI0A 5ARGA 5KJLA 4H12A 3OPEA 3N71A 4C1QA 4O6FA 2JV0A 4J8OA 4YPUA 2RFIA 5F5EA 1H3IA 3SWCA 3OXGA 5HQ8A 4QENA 5TTFA 5JHNA 3S7DA 4IJ8A 3S7BA 3RAYA 4YNDA 3F9ZA 3QWVA 1MT6A 3QWWA 3MO2A 4RZ0A 4JDSA 3S7FA 3M53A 4NVQA 2R3AA 3M5AA 3TG4A 3MEKA 5EG2A 4O30A 3M55A 3F9XA 4J7IA 1XQHA 4MI5A 2BQZA 3KMAA 3S8PA 5T0KA 3VV0A 2F69A 1N3JA 1O9SA 4Z4PA 4WUYA 4FMUA
chains in the Genus database with same CATH topology
4JLGA 3BO5A 3VUZA 1MUFA 5EX3A 5F6LA 1MVHA 5AYFA 4I51A 4J83A 3K5KA 3RU0A 4J7FA 5KJMA 5KJKA 5CPRB 3CBPA 5HI7A 1N6AA 3M58A 4YNPA 3OOIA 5CCLA 1ML9A 1MVXA 4YPAA 5F6KC 3CBOA 3M56A 5TH7A 3SW9A 5F59A 5TEGA 3M57A 3KMTA 4NJ5A 5CCMA 5LSZA 3MO0A 5JJ0A 3FPDA 1PEGA 4AU7A 4E47A 5EX0A 5T5GA 3IHXA 3S7JA 2G46A 4QEOA 3PDNA 2QPWA 2W5YA 2W5ZA 1ZKKA 4YPEA 3HNAA 3F9WA 3RJWA 3DB5A 2IGQA 3OS5A 3EP0A 5ARFA 4IJDA 5JIYA 3MO5A 2O8JA 5KJNA 3DALA 3QWPA 4LDGA 5LSXA 3RIBA 4QEPA 3TG5A 4BUPA 3OXLA 4YNMA 5T0MA 3OXFA 3M54A 3M59A 3CBMA 3RQ4A 5JINA 3KMJA 3F9YA 1N6CA 4MI0A 5ARGA 5KJLA 4H12A 3OPEA 3N71A 4C1QA 4O6FA 2JV0A 4J8OA 4YPUA 2RFIA 5F5EA 1H3IA 3SWCA 3OXGA 5HQ8A 4QENA 5TTFA 5JHNA 3S7DA 4IJ8A 3S7BA 3RAYA 4YNDA 3F9ZA 3QWVA 1MT6A 3QWWA 3MO2A 4RZ0A 4JDSA 3S7FA 3M53A 4NVQA 2R3AA 3M5AA 3TG4A 3MEKA 5EG2A 4O30A 3M55A 3F9XA 4J7IA 1XQHA 4MI5A 2BQZA 3KMAA 3S8PA 5T0KA 3VV0A 2F69A 1N3JA 1O9SA 4Z4PA 4WUYA 4FMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JLG A;  3BO5 A;  3VUZ A;  1MUF A;  5EX3 A;  5F6L A;  1MVH A;  5AYF A;  4I51 A;  4J83 A;  3K5K A;  3RU0 A;  4J7F A;  5KJM A;  5KJK A;  5CPR B;  3CBP A;  5HI7 A;  1N6A A;  3M58 A;  4YNP A;  3OOI A;  5CCL A;  1ML9 A;  1MVX A;  4YPA A;  5F6K C;  3CBO A;  3M56 A;  5TH7 A;  3SW9 A;  5F59 A;  5TEG A;  3M57 A;  3KMT A;  4NJ5 A;  5CCM A;  5LSZ A;  3MO0 A;  5JJ0 A;  3FPD A;  1PEG A;  4AU7 A;  4E47 A;  5EX0 A;  5T5G A;  3IHX A;  3S7J A;  2G46 A;  4QEO A;  3PDN A;  2QPW A;  2W5Y A;  2W5Z A;  1ZKK A;  4YPE A;  3HNA A;  3F9W A;  3RJW A;  3DB5 A;  2IGQ A;  3OS5 A;  3EP0 A;  5ARF A;  4IJD A;  5JIY A;  3MO5 A;  2O8J A;  5KJN A;  3DAL A;  3QWP A;  4LDG A;  5LSX A;  3RIB A;  4QEP A;  3TG5 A;  4BUP A;  3OXL A;  4YNM A;  5T0M A;  3OXF A;  3M54 A;  3M59 A;  3CBM A;  3RQ4 A;  5JIN A;  3KMJ A;  3F9Y A;  1N6C A;  4MI0 A;  5ARG A;  5KJL A;  4H12 A;  3OPE A;  3N71 A;  4C1Q A;  4O6F A;  2JV0 A;  4J8O A;  4YPU A;  2RFI A;  5F5E A;  1H3I A;  3SWC A;  3OXG A;  5HQ8 A;  4QEN A;  5TTF A;  5JHN A;  3S7D A;  4IJ8 A;  3S7B A;  3RAY A;  4YND A;  3F9Z A;  3QWV A;  1MT6 A;  3QWW A;  3MO2 A;  4RZ0 A;  4JDS A;  3S7F A;  3M53 A;  4NVQ A;  2R3A A;  3M5A A;  3TG4 A;  3MEK A;  5EG2 A;  4O30 A;  3M55 A;  3F9X A;  4J7I A;  1XQH A;  4MI5 A;  2BQZ A;  3KMA A;  3S8P A;  5T0K A;  3VV0 A;  2F69 A;  1N3J A;  1O9S A;  4Z4P A;  4WUY A;  4FMU A; 
#chains in the Genus database with same CATH topology
 4JLG A;  3BO5 A;  3VUZ A;  1MUF A;  5EX3 A;  5F6L A;  1MVH A;  5AYF A;  4I51 A;  4J83 A;  3K5K A;  3RU0 A;  4J7F A;  5KJM A;  5KJK A;  5CPR B;  3CBP A;  5HI7 A;  1N6A A;  3M58 A;  4YNP A;  3OOI A;  5CCL A;  1ML9 A;  1MVX A;  4YPA A;  5F6K C;  3CBO A;  3M56 A;  5TH7 A;  3SW9 A;  5F59 A;  5TEG A;  3M57 A;  3KMT A;  4NJ5 A;  5CCM A;  5LSZ A;  3MO0 A;  5JJ0 A;  3FPD A;  1PEG A;  4AU7 A;  4E47 A;  5EX0 A;  5T5G A;  3IHX A;  3S7J A;  2G46 A;  4QEO A;  3PDN A;  2QPW A;  2W5Y A;  2W5Z A;  1ZKK A;  4YPE A;  3HNA A;  3F9W A;  3RJW A;  3DB5 A;  2IGQ A;  3OS5 A;  3EP0 A;  5ARF A;  4IJD A;  5JIY A;  3MO5 A;  2O8J A;  5KJN A;  3DAL A;  3QWP A;  4LDG A;  5LSX A;  3RIB A;  4QEP A;  3TG5 A;  4BUP A;  3OXL A;  4YNM A;  5T0M A;  3OXF A;  3M54 A;  3M59 A;  3CBM A;  3RQ4 A;  5JIN A;  3KMJ A;  3F9Y A;  1N6C A;  4MI0 A;  5ARG A;  5KJL A;  4H12 A;  3OPE A;  3N71 A;  4C1Q A;  4O6F A;  2JV0 A;  4J8O A;  4YPU A;  2RFI A;  5F5E A;  1H3I A;  3SWC A;  3OXG A;  5HQ8 A;  4QEN A;  5TTF A;  5JHN A;  3S7D A;  4IJ8 A;  3S7B A;  3RAY A;  4YND A;  3F9Z A;  3QWV A;  1MT6 A;  3QWW A;  3MO2 A;  4RZ0 A;  4JDS A;  3S7F A;  3M53 A;  4NVQ A;  2R3A A;  3M5A A;  3TG4 A;  3MEK A;  5EG2 A;  4O30 A;  3M55 A;  3F9X A;  4J7I A;  1XQH A;  4MI5 A;  2BQZ A;  3KMA A;  3S8P A;  5T0K A;  3VV0 A;  2F69 A;  1N3J A;  1O9S A;  4Z4P A;  4WUY A;  4FMU A; 
#chains in the Genus database with same CATH homology
 4JLG A;  3BO5 A;  3VUZ A;  1MUF A;  5EX3 A;  5F6L A;  1MVH A;  5AYF A;  4I51 A;  4J83 A;  3K5K A;  3RU0 A;  4J7F A;  5KJM A;  5KJK A;  5CPR B;  3CBP A;  5HI7 A;  1N6A A;  3M58 A;  4YNP A;  3OOI A;  5CCL A;  1ML9 A;  1MVX A;  4YPA A;  5F6K C;  3CBO A;  3M56 A;  5TH7 A;  3SW9 A;  5F59 A;  5TEG A;  3M57 A;  3KMT A;  4NJ5 A;  5CCM A;  5LSZ A;  3MO0 A;  5JJ0 A;  3FPD A;  1PEG A;  4AU7 A;  4E47 A;  5EX0 A;  5T5G A;  3IHX A;  3S7J A;  2G46 A;  4QEO A;  3PDN A;  2QPW A;  2W5Y A;  2W5Z A;  1ZKK A;  4YPE A;  3HNA A;  3F9W A;  3RJW A;  3DB5 A;  2IGQ A;  3OS5 A;  3EP0 A;  5ARF A;  4IJD A;  5JIY A;  3MO5 A;  2O8J A;  5KJN A;  3DAL A;  3QWP A;  4LDG A;  5LSX A;  3RIB A;  4QEP A;  3TG5 A;  4BUP A;  3OXL A;  4YNM A;  5T0M A;  3OXF A;  3M54 A;  3M59 A;  3CBM A;  3RQ4 A;  5JIN A;  3KMJ A;  3F9Y A;  1N6C A;  4MI0 A;  5ARG A;  5KJL A;  4H12 A;  3OPE A;  3N71 A;  4C1Q A;  4O6F A;  2JV0 A;  4J8O A;  4YPU A;  2RFI A;  5F5E A;  1H3I A;  3SWC A;  3OXG A;  5HQ8 A;  4QEN A;  5TTF A;  5JHN A;  3S7D A;  4IJ8 A;  3S7B A;  3RAY A;  4YND A;  3F9Z A;  3QWV A;  1MT6 A;  3QWW A;  3MO2 A;  4RZ0 A;  4JDS A;  3S7F A;  3M53 A;  4NVQ A;  2R3A A;  3M5A A;  3TG4 A;  3MEK A;  5EG2 A;  4O30 A;  3M55 A;  3F9X A;  4J7I A;  1XQH A;  4MI5 A;  2BQZ A;  3KMA A;  3S8P A;  5T0K A;  3VV0 A;  2F69 A;  1N3J A;  1O9S A;  4Z4P A;  4WUY A;  4FMU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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