1PEG | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	293
structure length	266
Chain Sequence	LPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNCLCGTAKCRGYLW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Neurospora crassa
publication title	Structural basis for the product specificity of histone lysine methyltransferases pubmed doi rcsb
molecule keywords	histone H3 methyltransferase DIM-5
total genus	44
structure length	266
sequence length	293
chains with identical sequence	B
ec nomenclature	ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date	2003-05-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00856	SET	SET domain
A	PF05033	Pre-SET	Pre-SET motif

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.270.10	Mainly Beta	Beta Complex	Beta-clip-like	SET domain	1pegA00

4YPUA 3OOIA 4NVQA 5JHNA 3QWPA 5EG2A 3M54A 3M56A 5TTFA 4YNDA 2RFIA 4J83A 5ARGA 3KMTA 5AYFA 5HI7A 4IJ8A 5T5GA 2W5ZA 4WUYA 4QEPA 2R3AA 3S7JA 1MVHA 2JV0A 5JINA 4FMUA 5EX0A 4Z4PA 3OXLA 3HNAA 5TEGA 4LDGA 3QWWA 4J8OA 3QWVA 5F59A 3K5KA 3RU0A 3RIBA 1MUFA 3BO5A 3N71A 1H3IA 4BUPA 3VV0A 3OXGA 5KJKA 3EP0A 2G46A 4MI5A 3M57A 2W5YA 2QPWA 5TH7A 1N6CA 3MO2A 3OXFA 4J7IA 4O30A 3M55A 5F5EA 3M58A 5ARFA 5F6KC 4YNPA 5LSXA 3F9ZA 4NJ5A 1N3JA 5LSZA 4IJDA 3S7BA 3DALA 4O6FA 5EX3A 1ZKKA 3IHXA 3CBPA 4RZ0A 3TG5A 3RJWA 4YPAA 1XQHA 3KMAA 3M59A 5CPRB 5JJ0A 3F9YA 1PEGA 1N6AA 5CCMA 3TG4A 3RQ4A 4I51A 3MO5A 3F9WA 3KMJA 4J7FA 1MT6A 3S7FA 3S8PA 1ML9A 3VUZA 3F9XA 3SW9A 3OS5A 3M53A 5F6LA 2BQZA 2O8JA 5KJLA 3SWCA 4E47A 1O9SA 5KJNA 3PDNA 3S7DA 1MVXA 2F69A 3FPDA 4C1QA 2IGQA 3MEKA 5JIYA 5HQ8A 5T0KA 4QENA 4H12A 4MI0A 5KJMA 5CCLA 3RAYA 3M5AA 4AU7A 4JLGA 4YPEA 3MO0A 4QEOA 3CBMA 3DB5A 5T0MA 3CBOA 4JDSA 3OPEA 4YNMA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4YPU A;  3OOI A;  4NVQ A;  5JHN A;  3QWP A;  5EG2 A;  3M54 A;  3M56 A;  5TTF A;  4YND A;  2RFI A;  4J83 A;  5ARG A;  3KMT A;  5AYF A;  5HI7 A;  4IJ8 A;  5T5G A;  2W5Z A;  4WUY A;  4QEP A;  2R3A A;  3S7J A;  1MVH A;  2JV0 A;  5JIN A;  4FMU A;  5EX0 A;  4Z4P A;  3OXL A;  3HNA A;  5TEG A;  4LDG A;  3QWW A;  4J8O A;  3QWV A;  5F59 A;  3K5K A;  3RU0 A;  3RIB A;  1MUF A;  3BO5 A;  3N71 A;  1H3I A;  4BUP A;  3VV0 A;  3OXG A;  5KJK A;  3EP0 A;  2G46 A;  4MI5 A;  3M57 A;  2W5Y A;  2QPW A;  5TH7 A;  1N6C A;  3MO2 A;  3OXF A;  4J7I A;  4O30 A;  3M55 A;  5F5E A;  3M58 A;  5ARF A;  5F6K C;  4YNP A;  5LSX A;  3F9Z A;  4NJ5 A;  1N3J A;  5LSZ A;  4IJD A;  3S7B A;  3DAL A;  4O6F A;  5EX3 A;  1ZKK A;  3IHX A;  3CBP A;  4RZ0 A;  3TG5 A;  3RJW A;  4YPA A;  1XQH A;  3KMA A;  3M59 A;  5CPR B;  5JJ0 A;  3F9Y A;  1PEG A;  1N6A A;  5CCM A;  3TG4 A;  3RQ4 A;  4I51 A;  3MO5 A;  3F9W A;  3KMJ A;  4J7F A;  1MT6 A;  3S7F A;  3S8P A;  1ML9 A;  3VUZ A;  3F9X A;  3SW9 A;  3OS5 A;  3M53 A;  5F6L A;  2BQZ A;  2O8J A;  5KJL A;  3SWC A;  4E47 A;  1O9S A;  5KJN A;  3PDN A;  3S7D A;  1MVX A;  2F69 A;  3FPD A;  4C1Q A;  2IGQ A;  3MEK A;  5JIY A;  5HQ8 A;  5T0K A;  4QEN A;  4H12 A;  4MI0 A;  5KJM A;  5CCL A;  3RAY A;  3M5A A;  4AU7 A;  4JLG A;  4YPE A;  3MO0 A;  4QEO A;  3CBM A;  3DB5 A;  5T0M A;  3CBO A;  4JDS A;  3OPE A;  4YNM A; 
#chains in the Genus database with same CATH topology
 4YPU A;  3OOI A;  4NVQ A;  5JHN A;  3QWP A;  5EG2 A;  3M54 A;  3M56 A;  5TTF A;  4YND A;  2RFI A;  4J83 A;  5ARG A;  3KMT A;  5AYF A;  5HI7 A;  4IJ8 A;  5T5G A;  2W5Z A;  4WUY A;  4QEP A;  2R3A A;  3S7J A;  1MVH A;  2JV0 A;  5JIN A;  4FMU A;  5EX0 A;  4Z4P A;  3OXL A;  3HNA A;  5TEG A;  4LDG A;  3QWW A;  4J8O A;  3QWV A;  5F59 A;  3K5K A;  3RU0 A;  3RIB A;  1MUF A;  3BO5 A;  3N71 A;  1H3I A;  4BUP A;  3VV0 A;  3OXG A;  5KJK A;  3EP0 A;  2G46 A;  4MI5 A;  3M57 A;  2W5Y A;  2QPW A;  5TH7 A;  1N6C A;  3MO2 A;  3OXF A;  4J7I A;  4O30 A;  3M55 A;  5F5E A;  3M58 A;  5ARF A;  5F6K C;  4YNP A;  5LSX A;  3F9Z A;  4NJ5 A;  1N3J A;  5LSZ A;  4IJD A;  3S7B A;  3DAL A;  4O6F A;  5EX3 A;  1ZKK A;  3IHX A;  3CBP A;  4RZ0 A;  3TG5 A;  3RJW A;  4YPA A;  1XQH A;  3KMA A;  3M59 A;  5CPR B;  5JJ0 A;  3F9Y A;  1PEG A;  1N6A A;  5CCM A;  3TG4 A;  3RQ4 A;  4I51 A;  3MO5 A;  3F9W A;  3KMJ A;  4J7F A;  1MT6 A;  3S7F A;  3S8P A;  1ML9 A;  3VUZ A;  3F9X A;  3SW9 A;  3OS5 A;  3M53 A;  5F6L A;  2BQZ A;  2O8J A;  5KJL A;  3SWC A;  4E47 A;  1O9S A;  5KJN A;  3PDN A;  3S7D A;  1MVX A;  2F69 A;  3FPD A;  4C1Q A;  2IGQ A;  3MEK A;  5JIY A;  5HQ8 A;  5T0K A;  4QEN A;  4H12 A;  4MI0 A;  5KJM A;  5CCL A;  3RAY A;  3M5A A;  4AU7 A;  4JLG A;  4YPE A;  3MO0 A;  4QEO A;  3CBM A;  3DB5 A;  5T0M A;  3CBO A;  4JDS A;  3OPE A;  4YNM A; 
#chains in the Genus database with same CATH homology
 4YPU A;  3OOI A;  4NVQ A;  5JHN A;  3QWP A;  5EG2 A;  3M54 A;  3M56 A;  5TTF A;  4YND A;  2RFI A;  4J83 A;  5ARG A;  3KMT A;  5AYF A;  5HI7 A;  4IJ8 A;  5T5G A;  2W5Z A;  4WUY A;  4QEP A;  2R3A A;  3S7J A;  1MVH A;  2JV0 A;  5JIN A;  4FMU A;  5EX0 A;  4Z4P A;  3OXL A;  3HNA A;  5TEG A;  4LDG A;  3QWW A;  4J8O A;  3QWV A;  5F59 A;  3K5K A;  3RU0 A;  3RIB A;  1MUF A;  3BO5 A;  3N71 A;  1H3I A;  4BUP A;  3VV0 A;  3OXG A;  5KJK A;  3EP0 A;  2G46 A;  4MI5 A;  3M57 A;  2W5Y A;  2QPW A;  5TH7 A;  1N6C A;  3MO2 A;  3OXF A;  4J7I A;  4O30 A;  3M55 A;  5F5E A;  3M58 A;  5ARF A;  5F6K C;  4YNP A;  5LSX A;  3F9Z A;  4NJ5 A;  1N3J A;  5LSZ A;  4IJD A;  3S7B A;  3DAL A;  4O6F A;  5EX3 A;  1ZKK A;  3IHX A;  3CBP A;  4RZ0 A;  3TG5 A;  3RJW A;  4YPA A;  1XQH A;  3KMA A;  3M59 A;  5CPR B;  5JJ0 A;  3F9Y A;  1PEG A;  1N6A A;  5CCM A;  3TG4 A;  3RQ4 A;  4I51 A;  3MO5 A;  3F9W A;  3KMJ A;  4J7F A;  1MT6 A;  3S7F A;  3S8P A;  1ML9 A;  3VUZ A;  3F9X A;  3SW9 A;  3OS5 A;  3M53 A;  5F6L A;  2BQZ A;  2O8J A;  5KJL A;  3SWC A;  4E47 A;  1O9S A;  5KJN A;  3PDN A;  3S7D A;  1MVX A;  2F69 A;  3FPD A;  4C1Q A;  2IGQ A;  3MEK A;  5JIY A;  5HQ8 A;  5T0K A;  4QEN A;  4H12 A;  4MI0 A;  5KJM A;  5CCL A;  3RAY A;  3M5A A;  4AU7 A;  4JLG A;  4YPE A;  3MO0 A;  4QEO A;  3CBM A;  3DB5 A;  5T0M A;  3CBO A;  4JDS A;  3OPE A;  4YNM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1PEGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations