The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
88
|
sequence length |
299
|
structure length |
276
|
Chain Sequence |
TTFNYTNILTQAVDELSESQSYKGLFHQHKDGDPLPSAKSLYKIVELARAIIFPGYFGNSTVNSHTINYHIGVNVETLFGLLTEQILAGLCFGDNEPCRETASLLAARFISKLPELRRILATDVEAAYYGDPAATCFGEIISCYPAIRAISNYRIAHELLILGVPLIPRFITEMAHSETGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKPRHPILEDDVIVYSNATILGRVTIGKGATVGGNIWVTENVPAGSRIVQRKNK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Three dimensional structure of the serine acetyltransferase from Bacteroides vulgatus, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BVR62.
rcsb |
| molecule keywords |
Serine acetyltransferase
|
| molecule tags |
Transferase
|
| source organism |
Bacteroides vulgatus atcc 8482
|
| total genus |
88
|
| structure length |
276
|
| sequence length |
299
|
| ec nomenclature | |
| pdb deposition date | 2008-10-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00132 | Hexapep | Bacterial transferase hexapeptide (six repeats) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | serine acetyltransferase, domain 1 | serine acetyltransferase, domain 1 | ||
| Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase; domain 1 | Hexapeptide repeat proteins |
#chains in the Genus database with same CATH superfamily 2ICY A; 4EAA A; 1XAT A; 2ICX A; 4MFG A; 1OCX A; 2V0J A; 3F1X A; 4H7O A; 1Z90 A; 2QKX A; 1KQA A; 5U2K A; 2RIJ A; 3FOQ A; 3FWW A; 3VBP A; 3R1W A; 3DHO A; 5E3R A; 4N69 A; 2WLD A; 4K6R A; 4DCL A; 1SSQ A; 3FSY A; 5ADX V; 1FWY A; 1MR7 A; 3BSW A; 1XHD A; 4M98 A; 4N6A A; 3JQY A; 3R8Y A; 1QRM A; 1KRU A; 2P2O A; 4R37 A; 3BRK X; 1S80 A; 1KHR A; 3I3X A; 4M2A A; 5F42 A; 2IU9 A; 2W0W A; 2NPO A; 3BSS A; 3BXY A; 3KWC A; 2IC7 A; 1YP3 A; 1HM8 A; 3TV0 A; 4J18 A; 4KQL A; 2OI6 A; 4IHG A; 1KGQ A; 2OEF A; 2I5K A; 2W0V A; 4KPZ A; 3GVD A; 3TWD A; 4E6U A; 1KRR A; 4M9C A; 1J2Z A; 3R5B A; 3DK5 A; 1FXJ A; 5AFU V; 1LXA A; 3ECT A; 4KNR A; 4HZD A; 3TDT A; 3Q1X A; 1MRL A; 1G97 A; 2TDT A; 2QIV X; 3ST8 A; 3V4E A; 3BSY A; 2OI7 A; 2WLC A; 4N6B A; 3MQH A; 1TDT A; 4ISX A; 4G3Q A; 2V0H A; 3BFP A; 3TK8 A; 1T3D A; 4FCE A; 3D8V A; 4HUR A; 5L6V A; 3EEV A; 2JF2 A; 1KK4 A; 4IHH A; 2IUA A; 4AC3 A; 2V0K A; 3R5D A; 4EA9 A; 2V0I A; 4HZC A; 2WLF A; 3I3A A; 3MQG A; 2GGO A; 2JF3 A; 3KWE A; 3R5A A; 2XAT A; 4G3P A; 4G87 A; 2AQ9 A; 1QRL A; 2OI5 A; 3OUP A; 5DEM A; 2WLG A; 3D98 A; 5E3P A; 4E6T A; 3FSX A; 3SPT A; 4E79 A; 3VBN A; 4KPX A; 4AA7 A; 4EGG A; 4J09 A; 4HCQ A; 5E3Q A; 1KK5 A; 1SSM A; 4KNX A; 1QRE A; 3IGJ A; 3OTZ A; 4HUS A; 2OEG A; 4M2B A; 1HV9 A; 4M28 A; 4E1K A; 2FKO A; 1QQ0 A; 2WLE A; 3EG4 A; 4G3S A; 3EH0 A; 5DG3 A; 4MZU A; 3VBI A; 3PMO A; 3R5C A; 1YP4 A; 1QRG A; 1V3W A; 1KRV A; 3P47 A; 3GUE A; 2VHE A; 3VBL A; 4EAB A; 3GOS A; 4EQY A; 4M99 A; 1G95 A; 4R36 A; 3VBJ A; 3MC4 A; 5L6S A; 1HM9 A; 1THJ A; 3VBM A; 3OTM A; 4IHF A; 3FSB A; 3C8V A; 3TIO A; 4AAW A; 3HSQ A; 3VNP A; 3R3R A; 1HM0 A; 3R2W A; 4EA8 A; 2V0L A; 3DJ4 A; 1QRF A; 3FSC A; 5DEP A; 5AFU U; 3OW5 A; 1YP2 A; 4EA7 A; 3OU9 A; 1SST A; 3TIS A; 3P1B A; 1MR9 A; 1V67 A; 2VD4 A; 3FS8 A; 3R3I A; 3T57 A; 2QIA A; 4R7P A; 3VBK A; 3KWD A; 5ADX U; 3R0S A; 2IU8 A; 4N27 A; 3FTT A; 2Q4J A; 3SRT A; 4E75 A; 2GGQ A; 3IXC A; 3NZ2 A; 3CJ8 A; 1KK6 A; 1KGT A; 4MYO A; 3HJJ A; #chains in the Genus database with same CATH topology 3OH0 A; 2ICY A; 4EAA A; 1XAT A; 2ICX A; 4MFG A; 1OCX A; 2V0J A; 3F1X A; 4H7O A; 1Z90 A; 2QKX A; 1KQA A; 5U2K A; 2RIJ A; 3FOQ A; 3FWW A; 3VBP A; 3R1W A; 3DHO A; 5E3R A; 4N69 A; 2WLD A; 4K6R A; 4DCL A; 1SSQ A; 3FSY A; 2KY4 A; 1FWY A; 1MR7 A; 5ADX V; 3BSW A; 1XHD A; 2L8V A; 4M98 A; 1Z2F A; 4N6A A; 3GQ7 A; 3JQY A; 1QRM A; 1KRU A; 2P2O A; 3R8Y A; 4R37 A; 3BRK X; 3OGZ A; 1S80 A; 1KHR A; 3I3X A; 4M2A A; 5F42 A; 2IU9 A; 2W0W A; 2NPO A; 3BSS A; 2L06 A; 3BXY A; 3KWC A; 2IC7 A; 1YP3 A; 1HM8 A; 3OHW A; 3TV0 A; 4J18 A; 4KQL A; 2OI6 A; 4IHG A; 1KGQ A; 2OEF A; 2I5K A; 2W0V A; 4KPZ A; 3GVD A; 3TWD A; 4E6U A; 1KRR A; 4M9C A; 1J2Z A; 3R5B A; 3DK5 A; 1FXJ A; 5AFU V; 1LXA A; 3ECT A; 4KNR A; 4HZD A; 3TDT A; 3Q1X A; 1MRL A; 1G97 A; 2TDT A; 2QIV X; 3ST8 A; 3V4E A; 3BSY A; 2OI7 A; 2WLC A; 4N6B A; 3MQH A; 1TDT A; 4ISX A; 4G3Q A; 3SUC A; 2V0H A; 3BFP A; 3TK8 A; 1T3D A; 4FCE A; 3D8V A; 4HUR A; 5L6V A; 3EEV A; 3OH3 A; 2JF2 A; 1KK4 A; 4IHH A; 2IUA A; 4AC3 A; 2V0K A; 3R5D A; 4EA9 A; 2V0I A; 4HZC A; 2WLF A; 3I3A A; 3MQG A; 2GGO A; 2JF3 A; 3KWE A; 3R5A A; 2XAT A; 4G3P A; 3GQ8 A; 4G87 A; 2AQ9 A; 1QRL A; 2OI5 A; 3OH1 A; 3OUP A; 2WLG A; 3D98 A; 5DEM A; 5E3P A; 4E6T A; 3FSX A; 3SPT A; 4E79 A; 3VBN A; 4KPX A; 4AA7 A; 4EGG A; 3PRU A; 4J09 A; 3OSJ A; 4HCQ A; 5E3Q A; 1KK5 A; 1SSM A; 4KNX A; 1QRE A; 3IGJ A; 3OTZ A; 4HUS A; 2OEG A; 4M2B A; 1HV9 A; 4M28 A; 4E1K A; 3NPH B; 1QQ0 A; 2FKO A; 2WLE A; 3EG4 A; 4G3S A; 3EH0 A; 1L0S A; 5DG3 A; 4MZU A; 1M8N A; 3PMO A; 3R5C A; 1YP4 A; 3VBI A; 1QRG A; 3OH4 A; 1V3W A; 1KRV A; 3P47 A; 3GUE A; 2VHE A; 3GQA A; 3VBL A; 4EAB A; 3GOS A; 4EQY A; 4M99 A; 1G95 A; 4R36 A; 3VBJ A; 3MC4 A; 5L6S A; 1HM9 A; 1THJ A; 1N4I A; 3VBM A; 3OTM A; 4IHF A; 3FSB A; 3C8V A; 3TIO A; 4AAW A; 3HSQ A; 3VNP A; 3R3R A; 1HM0 A; 3R2W A; 4EA8 A; 2V0L A; 3DJ4 A; 1QRF A; 3FSC A; 2L3W A; 5DEP A; 5AFU U; 3OW5 A; 1YP2 A; 4EA7 A; 3OU9 A; 1EWW A; 1SST A; 3TIS A; 3P1B A; 1MR9 A; 1V67 A; 2VD4 A; 3FS8 A; 3R3I A; 3T57 A; 2QIA A; 4R7P A; 3VBK A; 3KWD A; 5ADX U; 3R0S A; 2IU8 A; 4N27 A; 3FTT A; 2Q4J A; 3GQ9 A; 3SRT A; 4E75 A; 2GGQ A; 3IXC A; 3OH2 A; 3NZ2 A; 3CJ8 A; 1KK6 A; 1KGT A; 4MYO A; 3HJJ A; #chains in the Genus database with same CATH homology 2ICY A; 4EAA A; 1XAT A; 2ICX A; 4MFG A; 1OCX A; 2V0J A; 3F1X A; 4H7O A; 1Z90 A; 2QKX A; 1KQA A; 5U2K A; 2RIJ A; 3FOQ A; 3FWW A; 3VBP A; 3R1W A; 3DHO A; 5E3R A; 4N69 A; 2WLD A; 4K6R A; 4DCL A; 1SSQ A; 3FSY A; 2KY4 A; 1FWY A; 1MR7 A; 5ADX V; 3BSW A; 1XHD A; 2L8V A; 4M98 A; 4N6A A; 3JQY A; 3R8Y A; 1QRM A; 1KRU A; 2P2O A; 4R37 A; 3BRK X; 1S80 A; 1KHR A; 3I3X A; 4M2A A; 5F42 A; 2IU9 A; 2W0W A; 2NPO A; 3BSS A; 2L06 A; 3BXY A; 3KWC A; 2IC7 A; 1YP3 A; 1HM8 A; 3OHW A; 3TV0 A; 4J18 A; 4KQL A; 2OI6 A; 4IHG A; 1KGQ A; 2OEF A; 2I5K A; 2W0V A; 4KPZ A; 3GVD A; 3TWD A; 4E6U A; 1KRR A; 4M9C A; 1J2Z A; 3R5B A; 3DK5 A; 1FXJ A; 5AFU V; 1LXA A; 3ECT A; 4KNR A; 4HZD A; 3TDT A; 3Q1X A; 1MRL A; 1G97 A; 2TDT A; 2QIV X; 3ST8 A; 3V4E A; 3BSY A; 2OI7 A; 2WLC A; 4N6B A; 3MQH A; 1TDT A; 4ISX A; 4G3Q A; 2V0H A; 3BFP A; 3TK8 A; 1T3D A; 4FCE A; 3D8V A; 4HUR A; 5L6V A; 3EEV A; 2JF2 A; 1KK4 A; 4IHH A; 2IUA A; 4AC3 A; 2V0K A; 3R5D A; 4EA9 A; 2V0I A; 4HZC A; 2WLF A; 3I3A A; 3MQG A; 2GGO A; 2JF3 A; 3KWE A; 3R5A A; 2XAT A; 4G3P A; 4G87 A; 2AQ9 A; 1QRL A; 2OI5 A; 3OUP A; 5DEM A; 2WLG A; 3D98 A; 5E3P A; 4E6T A; 3FSX A; 3SPT A; 4E79 A; 3VBN A; 4KPX A; 4AA7 A; 4EGG A; 3PRU A; 4J09 A; 3OSJ A; 4HCQ A; 5E3Q A; 1KK5 A; 1SSM A; 4KNX A; 1QRE A; 3IGJ A; 3OTZ A; 4HUS A; 2OEG A; 4M2B A; 1HV9 A; 4M28 A; 4E1K A; 3NPH B; 1QQ0 A; 2FKO A; 2WLE A; 3EG4 A; 4G3S A; 3EH0 A; 5DG3 A; 4MZU A; 3VBI A; 3PMO A; 3R5C A; 1YP4 A; 1QRG A; 1V3W A; 1KRV A; 3P47 A; 3GUE A; 2VHE A; 3VBL A; 4EAB A; 3GOS A; 4EQY A; 4M99 A; 1G95 A; 4R36 A; 3VBJ A; 3MC4 A; 5L6S A; 1HM9 A; 1THJ A; 3VBM A; 3OTM A; 4IHF A; 3FSB A; 3C8V A; 3TIO A; 4AAW A; 3HSQ A; 3VNP A; 3R3R A; 1HM0 A; 3R2W A; 4EA8 A; 2V0L A; 3DJ4 A; 1QRF A; 3FSC A; 2L3W A; 5DEP A; 5AFU U; 3OW5 A; 1YP2 A; 4EA7 A; 3OU9 A; 1SST A; 3TIS A; 3P1B A; 1MR9 A; 1V67 A; 2VD4 A; 3FS8 A; 3R3I A; 3T57 A; 2QIA A; 4R7P A; 3VBK A; 3KWD A; 5ADX U; 3R0S A; 2IU8 A; 4N27 A; 3FTT A; 2Q4J A; 3SRT A; 4E75 A; 2GGQ A; 3IXC A; 3NZ2 A; 3CJ8 A; 1KK6 A; 1KGT A; 4MYO A; 3HJJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
