1TXZA

Crystal structure of yeast ymx7, an adp-ribose-1''-monophosphatase, complexed with adp-ribose
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
264
structure length
249
Chain Sequence
KMRIILCDTNEVVTNLWQESIPKYLCIHHGHLQSLMDSMRKGDAHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYLQYPFEPFFPESCKIECQKLGIDIEMLKSFNVEKDAIELLIPRRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical 32.1 kDa protein in ADH3-RCA1 intergenic region
publication title Structure and mechanism of ADP-ribose-1''-monophosphatase (Appr-1''-pase), a ubiquitous cellular processing enzyme.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 76
structure length 249
sequence length 264
ec nomenclature ec 3.1.3.84: ADP-ribose 1''-phosphate phosphatase.
pdb deposition date 2004-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14519 Macro_2 Macro-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 1txzA00
5E3BA 3Q71A 1LCPA 1NJRA 3SIHA 3V2BA 4JGKA 5FSVA 2BFRA 3T8WA 5HOLA 3EW5A 5AILA 4D86A 4ZX9A 4ESSA 2EWBA 4J4ZA 3KR4A 2EEEA 4X2TA 2ACFA 5CMSA 5FSYA 2J9AA 3GQEA 4J5SA 4R76A 3EKEA 3SIIA 5CB5A 4ZY1A 1BPNA 3H8GA 3VFQA 3IIDA 4IQYA 1GYTA 4GVVA 4R6TA 4ABKA 4GUAA 2X47A 3JRUA 4ZI6A 5FSXA 2FAVA 3V45A 1BLLE 2AFCA 4ZY2A 3EJGA 2LGRA 3Q6ZA 5HIHA 4ABLA 3KR5A 3PEIA 3EWPA 1LAPA 4ETJA 3KQXA 4KSIA 1TXZA 1ZR5A 3JZTA 3H8FA 1YD9A 4JLLA 2L8RA 3EWOA 2DX6A 4UMLA 4GVWA 5FSZA 2BFQA 5CB3A 1BPMA 1ZR3A 4J5QA 3GPOA 5D8NA 3KQZA 2FXKA 1HJZA 4ETKA 2VRIA 3SIJA 5FSUA 4KYBA 4ZX8A 3H8EA 3EWQA 5DUSA 4ZY0A 3EJFA 2FG1A 2XD7A 3GPQA 3IJ3A 4ZYQA 4R7MA 3GPGA 4JCAA 5CBMA 1VHUA 3EWRA 3SIGA 1LANA 3ETIA 4JVVA 4J5RA 1SPVA 3GQOA 3IIFA 4K0CA 1TY8A 4TU0A 1LAMA 4K3NA 3KZWA
chains in the Genus database with same CATH superfamily
5E3BA 3Q71A 1LCPA 1NJRA 3SIHA 3V2BA 4JGKA 5FSVA 2BFRA 3T8WA 5HOLA 3EW5A 5AILA 4D86A 4ZX9A 4ESSA 2EWBA 4J4ZA 3KR4A 2EEEA 4X2TA 2ACFA 5CMSA 5FSYA 2J9AA 3GQEA 4J5SA 4R76A 3EKEA 3SIIA 2JZEA 5CB5A 4ZY1A 1BPNA 3H8GA 3VFQA 3IIDA 4IQYA 1GYTA 4GVVA 4R6TA 4ABKA 4GUAA 2X47A 3JRUA 4ZI6A 5FSXA 2FAVA 3V45A 1BLLE 2AFCA 4ZY2A 3EJGA 2LGRA 3Q6ZA 5HIHA 2W2GA 4ABLA 3KR5A 2WCTA 3PEIA 3EWPA 1LAPA 4ETJA 3KQXA 4KSIA 1TXZA 1ZR5A 3JZTA 3H8FA 1YD9A 4JLLA 2L8RA 3EWOA 2DX6A 2JZDA 4GVWA 4UMLA 5FSZA 2BFQA 5CB3A 1BPMA 1ZR3A 2JZFA 3GPOA 4J5QA 5D8NA 3KQZA 2FXKA 1HJZA 4ETKA 2VRIA 2KQVA 3SIJA 2RNKA 5FSUA 4KYBA 4ZX8A 3H8EA 3EWQA 5DUSA 4ZY0A 3EJFA 2FG1A 2XD7A 3GPQA 3IJ3A 4ZYQA 4R7MA 3GPGA 4JCAA 5CBMA 1VHUA 3EWRA 3SIGA 1LANA 3ETIA 4JVVA 4J5RA 1SPVA 3GQOA 3IIFA 4K0CA 1TY8A 4TU0A 1LAMA 4K3NA 3KZWA
chains in the Genus database with same CATH topology
5E3BA 3Q71A 1LCPA 1NJRA 3SIHA 3V2BA 4JGKA 5FSVA 2BFRA 3T8WA 5HOLA 3EW5A 5AILA 4D86A 4ZX9A 4ESSA 2EWBA 4J4ZA 3KR4A 2EEEA 4X2TA 2ACFA 5CMSA 5FSYA 2J9AA 3GQEA 4J5SA 4R76A 3EKEA 3SIIA 5CB5A 4ZY1A 1BPNA 3H8GA 3VFQA 3IIDA 4IQYA 1GYTA 4GVVA 4R6TA 4ABKA 4GUAA 2X47A 3JRUA 4ZI6A 5FSXA 2FAVA 3V45A 1BLLE 2AFCA 4ZY2A 3EJGA 2LGRA 3Q6ZA 5HIHA 4ABLA 3KR5A 3PEIA 3EWPA 1LAPA 4ETJA 3KQXA 4KSIA 1TXZA 1ZR5A 3JZTA 3H8FA 1YD9A 4JLLA 2L8RA 3EWOA 2DX6A 4UMLA 4GVWA 5FSZA 2BFQA 5CB3A 1BPMA 1ZR3A 4J5QA 3GPOA 5D8NA 3KQZA 2FXKA 1HJZA 4ETKA 2VRIA 3SIJA 5FSUA 4KYBA 4ZX8A 3H8EA 3EWQA 5DUSA 4ZY0A 3EJFA 2FG1A 2XD7A 3GPQA 3IJ3A 4ZYQA 4R7MA 3GPGA 4JCAA 5CBMA 1VHUA 3EWRA 3SIGA 1LANA 3ETIA 4JVVA 4J5RA 1SPVA 3GQOA 3IIFA 4K0CA 1TY8A 4TU0A 1LAMA 4K3NA 3KZWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E3B A;  3Q71 A;  1LCP A;  1NJR A;  3SIH A;  3V2B A;  4JGK A;  5FSV A;  2BFR A;  3T8W A;  5HOL A;  3EW5 A;  5AIL A;  4D86 A;  4ZX9 A;  4ESS A;  2EWB A;  4J4Z A;  3KR4 A;  2EEE A;  4X2T A;  2ACF A;  5CMS A;  5FSY A;  2J9A A;  3GQE A;  4J5S A;  4R76 A;  3EKE A;  3SII A;  5CB5 A;  4ZY1 A;  1BPN A;  3H8G A;  3VFQ A;  3IID A;  4IQY A;  1GYT A;  4GVV A;  4R6T A;  4ABK A;  4GUA A;  2X47 A;  3JRU A;  4ZI6 A;  5FSX A;  2FAV A;  3V45 A;  1BLL E;  2AFC A;  4ZY2 A;  3EJG A;  2LGR A;  3Q6Z A;  5HIH A;  4ABL A;  3KR5 A;  3PEI A;  3EWP A;  1LAP A;  4ETJ A;  3KQX A;  4KSI A;  1TXZ A;  1ZR5 A;  3JZT A;  3H8F A;  1YD9 A;  4JLL A;  2L8R A;  3EWO A;  2DX6 A;  4UML A;  4GVW A;  5FSZ A;  2BFQ A;  5CB3 A;  1BPM A;  1ZR3 A;  4J5Q A;  3GPO A;  5D8N A;  3KQZ A;  2FXK A;  1HJZ A;  4ETK A;  2VRI A;  3SIJ A;  5FSU A;  4KYB A;  4ZX8 A;  3H8E A;  3EWQ A;  5DUS A;  4ZY0 A;  3EJF A;  2FG1 A;  2XD7 A;  3GPQ A;  3IJ3 A;  4ZYQ A;  4R7M A;  3GPG A;  4JCA A;  5CBM A;  1VHU A;  3EWR A;  3SIG A;  1LAN A;  3ETI A;  4JVV A;  4J5R A;  1SPV A;  3GQO A;  3IIF A;  4K0C A;  1TY8 A;  4TU0 A;  1LAM A;  4K3N A;  3KZW A; 
#chains in the Genus database with same CATH topology
 5E3B A;  3Q71 A;  1LCP A;  1NJR A;  3SIH A;  3V2B A;  4JGK A;  5FSV A;  2BFR A;  3T8W A;  5HOL A;  3EW5 A;  5AIL A;  4D86 A;  4ZX9 A;  4ESS A;  2EWB A;  4J4Z A;  3KR4 A;  2EEE A;  4X2T A;  2ACF A;  5CMS A;  5FSY A;  2J9A A;  3GQE A;  4J5S A;  4R76 A;  3EKE A;  3SII A;  2JZE A;  5CB5 A;  4ZY1 A;  1BPN A;  3H8G A;  3VFQ A;  3IID A;  4IQY A;  1GYT A;  4GVV A;  4R6T A;  4ABK A;  4GUA A;  2X47 A;  3JRU A;  4ZI6 A;  5FSX A;  2FAV A;  3V45 A;  1BLL E;  2AFC A;  4ZY2 A;  3EJG A;  2LGR A;  3Q6Z A;  5HIH A;  2W2G A;  4ABL A;  3KR5 A;  2WCT A;  3PEI A;  3EWP A;  1LAP A;  4ETJ A;  3KQX A;  4KSI A;  1TXZ A;  1ZR5 A;  3JZT A;  3H8F A;  1YD9 A;  4JLL A;  2L8R A;  3EWO A;  2DX6 A;  2JZD A;  4GVW A;  4UML A;  5FSZ A;  2BFQ A;  5CB3 A;  1BPM A;  1ZR3 A;  2JZF A;  3GPO A;  4J5Q A;  5D8N A;  3KQZ A;  2FXK A;  1HJZ A;  4ETK A;  2VRI A;  2KQV A;  3SIJ A;  2RNK A;  5FSU A;  4KYB A;  4ZX8 A;  3H8E A;  3EWQ A;  5DUS A;  4ZY0 A;  3EJF A;  2FG1 A;  2XD7 A;  3GPQ A;  3IJ3 A;  4ZYQ A;  4R7M A;  3GPG A;  4JCA A;  5CBM A;  1VHU A;  3EWR A;  3SIG A;  1LAN A;  3ETI A;  4JVV A;  4J5R A;  1SPV A;  3GQO A;  3IIF A;  4K0C A;  1TY8 A;  4TU0 A;  1LAM A;  4K3N A;  3KZW A; 
#chains in the Genus database with same CATH homology
 5E3B A;  3Q71 A;  1LCP A;  1NJR A;  3SIH A;  3V2B A;  4JGK A;  5FSV A;  2BFR A;  3T8W A;  5HOL A;  3EW5 A;  5AIL A;  4D86 A;  4ZX9 A;  4ESS A;  2EWB A;  4J4Z A;  3KR4 A;  2EEE A;  4X2T A;  2ACF A;  5CMS A;  5FSY A;  2J9A A;  3GQE A;  4J5S A;  4R76 A;  3EKE A;  3SII A;  5CB5 A;  4ZY1 A;  1BPN A;  3H8G A;  3VFQ A;  3IID A;  4IQY A;  1GYT A;  4GVV A;  4R6T A;  4ABK A;  4GUA A;  2X47 A;  3JRU A;  4ZI6 A;  5FSX A;  2FAV A;  3V45 A;  1BLL E;  2AFC A;  4ZY2 A;  3EJG A;  2LGR A;  3Q6Z A;  5HIH A;  4ABL A;  3KR5 A;  3PEI A;  3EWP A;  1LAP A;  4ETJ A;  3KQX A;  4KSI A;  1TXZ A;  1ZR5 A;  3JZT A;  3H8F A;  1YD9 A;  4JLL A;  2L8R A;  3EWO A;  2DX6 A;  4UML A;  4GVW A;  5FSZ A;  2BFQ A;  5CB3 A;  1BPM A;  1ZR3 A;  4J5Q A;  3GPO A;  5D8N A;  3KQZ A;  2FXK A;  1HJZ A;  4ETK A;  2VRI A;  3SIJ A;  5FSU A;  4KYB A;  4ZX8 A;  3H8E A;  3EWQ A;  5DUS A;  4ZY0 A;  3EJF A;  2FG1 A;  2XD7 A;  3GPQ A;  3IJ3 A;  4ZYQ A;  4R7M A;  3GPG A;  4JCA A;  5CBM A;  1VHU A;  3EWR A;  3SIG A;  1LAN A;  3ETI A;  4JVV A;  4J5R A;  1SPV A;  3GQO A;  3IIF A;  4K0C A;  1TY8 A;  4TU0 A;  1LAM A;  4K3N A;  3KZW A; 
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similar chains in the Genus database (?% sequence similarity)
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