3SIIA

The x-ray crystal structure of poly(adp-ribose) glycohydrolase bound to the inhibitor adp-hpd from thermomonospora curvata
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
274
structure length
265
Chain Sequence
RHSRRAIAAETVEILERGRYTAPSGRVVPIADHVAQAVRGTRLYRPEKLAVLLEGTRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEEGLARSSGLYASLRAVPQFYAFHHRQRDPLYSDHLIYSPGVPVFRDDAGRLLEEPYRVAFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFAHVVFAVWDTAPGAPRHAAFARRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords poly(ADP-ribose) glycohydrolase
publication title The structure and catalytic mechanism of a poly(ADP-ribose) glycohydrolase.
pubmed doi rcsb
source organism Thermomonospora curvata
total genus 97
structure length 265
sequence length 274
ec nomenclature ec 3.2.1.143: Poly(ADP-ribose) glycohydrolase.
pdb deposition date 2011-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10021 DUF2263 Uncharacterized protein conserved in bacteria (DUF2263)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3siiA00
4ETKA 3IIFA 5CB3A 1LAMA 4UMLA 3EWRA 4ZX8A 3SIIA 3KR4A 4JGKA 3EJFA 4K0CA 4TU0A 4ESSA 3KQXA 3GQOA 3IIDA 4J5QA 4ABKA 4J5RA 5CMSA 3SIGA 4R6TA 3SIJA 3V45A 1ZR5A 3GPGA 2EWBA 2AFCA 1SPVA 4D86A 4K3NA 3ETIA 4ZY1A 1TY8A 4J4ZA 5FSUA 2VRIA 2DX6A 4GVVA 2LGRA 3JRUA 1TXZA 2L8RA 3KZWA 3H8FA 3GPOA 1NJRA 2BFRA 2BFQA 4ZY2A 3Q71A 2XD7A 2FAVA 4ZYQA 3VFQA 3GQEA 2FG1A 3V2BA 4J5SA 2X47A 4JCAA 3EWOA 5HOLA 5D8NA 4KSIA 3EJGA 4KYBA 3KR5A 1LANA 2FXKA 3JZTA 4GVWA 3EW5A 3IJ3A 5FSVA 1LCPA 4ZX9A 3H8GA 4GUAA 5FSXA 4ZY0A 3EWQA 4JVVA 5CBMA 3SIHA 4R7MA 1YD9A 4ETJA 2ACFA 5AILA 1VHUA 4R76A 1BPMA 5DUSA 4X2TA 5E3BA 4IQYA 3Q6ZA 3EKEA 3EWPA 1BPNA 3GPQA 3T8WA 3PEIA 3H8EA 1GYTA 1LAPA 5CB5A 4ABLA 1HJZA 4ZI6A 5HIHA 5FSZA 1ZR3A 1BLLE 4JLLA 2J9AA 5FSYA 3KQZA 2EEEA
chains in the Genus database with same CATH superfamily
4ETKA 3IIFA 5CB3A 1LAMA 4UMLA 3EWRA 4ZX8A 3SIIA 3KR4A 4JGKA 3EJFA 4K0CA 4TU0A 4ESSA 3KQXA 3GQOA 3IIDA 4J5QA 4ABKA 4J5RA 5CMSA 3SIGA 4R6TA 2W2GA 3SIJA 3V45A 1ZR5A 3GPGA 2EWBA 2AFCA 1SPVA 4D86A 4K3NA 3ETIA 2JZFA 4ZY1A 1TY8A 4J4ZA 5FSUA 2VRIA 2DX6A 4GVVA 2LGRA 3JRUA 1TXZA 2L8RA 3KZWA 3H8FA 3GPOA 1NJRA 2BFRA 2BFQA 4ZY2A 3Q71A 2XD7A 2FAVA 4ZYQA 2JZDA 3VFQA 3GQEA 2FG1A 3V2BA 4J5SA 2X47A 4JCAA 3EWOA 5HOLA 5D8NA 4KSIA 3EJGA 4KYBA 3KR5A 1LANA 2FXKA 2WCTA 3JZTA 2RNKA 4GVWA 3EW5A 3IJ3A 5FSVA 1LCPA 4ZX9A 3H8GA 4GUAA 5FSXA 4ZY0A 3EWQA 4JVVA 5CBMA 3SIHA 4R7MA 1YD9A 4ETJA 2ACFA 5AILA 1VHUA 4R76A 1BPMA 5DUSA 4X2TA 5E3BA 4IQYA 3Q6ZA 3EKEA 3EWPA 2KQVA 1BPNA 3GPQA 3T8WA 3PEIA 3H8EA 1GYTA 1LAPA 5CB5A 4ABLA 1HJZA 4ZI6A 5HIHA 5FSZA 1ZR3A 1BLLE 4JLLA 2J9AA 5FSYA 3KQZA 2JZEA 2EEEA
chains in the Genus database with same CATH topology
4ETKA 3IIFA 5CB3A 1LAMA 4UMLA 3EWRA 4ZX8A 3SIIA 3KR4A 4JGKA 3EJFA 4K0CA 4TU0A 4ESSA 3KQXA 3GQOA 3IIDA 4J5QA 4ABKA 4J5RA 5CMSA 3SIGA 4R6TA 3SIJA 3V45A 1ZR5A 3GPGA 2EWBA 2AFCA 1SPVA 4D86A 4K3NA 3ETIA 4ZY1A 1TY8A 4J4ZA 5FSUA 2VRIA 2DX6A 4GVVA 2LGRA 3JRUA 1TXZA 2L8RA 3KZWA 3H8FA 3GPOA 1NJRA 2BFRA 2BFQA 4ZY2A 3Q71A 2XD7A 2FAVA 4ZYQA 3VFQA 3GQEA 2FG1A 3V2BA 4J5SA 2X47A 4JCAA 3EWOA 5HOLA 5D8NA 4KSIA 3EJGA 4KYBA 3KR5A 1LANA 2FXKA 3JZTA 4GVWA 3EW5A 3IJ3A 5FSVA 1LCPA 4ZX9A 3H8GA 4GUAA 5FSXA 4ZY0A 3EWQA 4JVVA 5CBMA 3SIHA 4R7MA 1YD9A 4ETJA 2ACFA 5AILA 1VHUA 4R76A 1BPMA 5DUSA 4X2TA 5E3BA 4IQYA 3Q6ZA 3EKEA 3EWPA 1BPNA 3GPQA 3T8WA 3PEIA 3H8EA 1GYTA 1LAPA 5CB5A 4ABLA 1HJZA 4ZI6A 5HIHA 5FSZA 1ZR3A 1BLLE 4JLLA 2J9AA 5FSYA 3KQZA 2EEEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ETK A;  3IIF A;  5CB3 A;  1LAM A;  4UML A;  3EWR A;  4ZX8 A;  3SII A;  3KR4 A;  4JGK A;  3EJF A;  4K0C A;  4TU0 A;  4ESS A;  3KQX A;  3GQO A;  3IID A;  4J5Q A;  4ABK A;  4J5R A;  5CMS A;  3SIG A;  4R6T A;  3SIJ A;  3V45 A;  1ZR5 A;  3GPG A;  2EWB A;  2AFC A;  1SPV A;  4D86 A;  4K3N A;  3ETI A;  4ZY1 A;  1TY8 A;  4J4Z A;  5FSU A;  2VRI A;  2DX6 A;  4GVV A;  2LGR A;  3JRU A;  1TXZ A;  2L8R A;  3KZW A;  3H8F A;  3GPO A;  1NJR A;  2BFR A;  2BFQ A;  4ZY2 A;  3Q71 A;  2XD7 A;  2FAV A;  4ZYQ A;  3VFQ A;  3GQE A;  2FG1 A;  3V2B A;  4J5S A;  2X47 A;  4JCA A;  3EWO A;  5HOL A;  5D8N A;  4KSI A;  3EJG A;  4KYB A;  3KR5 A;  1LAN A;  2FXK A;  3JZT A;  4GVW A;  3EW5 A;  3IJ3 A;  5FSV A;  1LCP A;  4ZX9 A;  3H8G A;  4GUA A;  5FSX A;  4ZY0 A;  3EWQ A;  4JVV A;  5CBM A;  3SIH A;  4R7M A;  1YD9 A;  4ETJ A;  2ACF A;  5AIL A;  1VHU A;  4R76 A;  1BPM A;  5DUS A;  4X2T A;  5E3B A;  4IQY A;  3Q6Z A;  3EKE A;  3EWP A;  1BPN A;  3GPQ A;  3T8W A;  3PEI A;  3H8E A;  1GYT A;  1LAP A;  5CB5 A;  4ABL A;  1HJZ A;  4ZI6 A;  5HIH A;  5FSZ A;  1ZR3 A;  1BLL E;  4JLL A;  2J9A A;  5FSY A;  3KQZ A;  2EEE A; 
#chains in the Genus database with same CATH topology
 4ETK A;  3IIF A;  5CB3 A;  1LAM A;  4UML A;  3EWR A;  4ZX8 A;  3SII A;  3KR4 A;  4JGK A;  3EJF A;  4K0C A;  4TU0 A;  4ESS A;  3KQX A;  3GQO A;  3IID A;  4J5Q A;  4ABK A;  4J5R A;  5CMS A;  3SIG A;  4R6T A;  2W2G A;  3SIJ A;  3V45 A;  1ZR5 A;  3GPG A;  2EWB A;  2AFC A;  1SPV A;  4D86 A;  4K3N A;  3ETI A;  2JZF A;  4ZY1 A;  1TY8 A;  4J4Z A;  5FSU A;  2VRI A;  2DX6 A;  4GVV A;  2LGR A;  3JRU A;  1TXZ A;  2L8R A;  3KZW A;  3H8F A;  3GPO A;  1NJR A;  2BFR A;  2BFQ A;  4ZY2 A;  3Q71 A;  2XD7 A;  2FAV A;  4ZYQ A;  2JZD A;  3VFQ A;  3GQE A;  2FG1 A;  3V2B A;  4J5S A;  2X47 A;  4JCA A;  3EWO A;  5HOL A;  5D8N A;  4KSI A;  3EJG A;  4KYB A;  3KR5 A;  1LAN A;  2FXK A;  2WCT A;  3JZT A;  2RNK A;  4GVW A;  3EW5 A;  3IJ3 A;  5FSV A;  1LCP A;  4ZX9 A;  3H8G A;  4GUA A;  5FSX A;  4ZY0 A;  3EWQ A;  4JVV A;  5CBM A;  3SIH A;  4R7M A;  1YD9 A;  4ETJ A;  2ACF A;  5AIL A;  1VHU A;  4R76 A;  1BPM A;  5DUS A;  4X2T A;  5E3B A;  4IQY A;  3Q6Z A;  3EKE A;  3EWP A;  2KQV A;  1BPN A;  3GPQ A;  3T8W A;  3PEI A;  3H8E A;  1GYT A;  1LAP A;  5CB5 A;  4ABL A;  1HJZ A;  4ZI6 A;  5HIH A;  5FSZ A;  1ZR3 A;  1BLL E;  4JLL A;  2J9A A;  5FSY A;  3KQZ A;  2JZE A;  2EEE A; 
#chains in the Genus database with same CATH homology
 4ETK A;  3IIF A;  5CB3 A;  1LAM A;  4UML A;  3EWR A;  4ZX8 A;  3SII A;  3KR4 A;  4JGK A;  3EJF A;  4K0C A;  4TU0 A;  4ESS A;  3KQX A;  3GQO A;  3IID A;  4J5Q A;  4ABK A;  4J5R A;  5CMS A;  3SIG A;  4R6T A;  3SIJ A;  3V45 A;  1ZR5 A;  3GPG A;  2EWB A;  2AFC A;  1SPV A;  4D86 A;  4K3N A;  3ETI A;  4ZY1 A;  1TY8 A;  4J4Z A;  5FSU A;  2VRI A;  2DX6 A;  4GVV A;  2LGR A;  3JRU A;  1TXZ A;  2L8R A;  3KZW A;  3H8F A;  3GPO A;  1NJR A;  2BFR A;  2BFQ A;  4ZY2 A;  3Q71 A;  2XD7 A;  2FAV A;  4ZYQ A;  3VFQ A;  3GQE A;  2FG1 A;  3V2B A;  4J5S A;  2X47 A;  4JCA A;  3EWO A;  5HOL A;  5D8N A;  4KSI A;  3EJG A;  4KYB A;  3KR5 A;  1LAN A;  2FXK A;  3JZT A;  4GVW A;  3EW5 A;  3IJ3 A;  5FSV A;  1LCP A;  4ZX9 A;  3H8G A;  4GUA A;  5FSX A;  4ZY0 A;  3EWQ A;  4JVV A;  5CBM A;  3SIH A;  4R7M A;  1YD9 A;  4ETJ A;  2ACF A;  5AIL A;  1VHU A;  4R76 A;  1BPM A;  5DUS A;  4X2T A;  5E3B A;  4IQY A;  3Q6Z A;  3EKE A;  3EWP A;  1BPN A;  3GPQ A;  3T8W A;  3PEI A;  3H8E A;  1GYT A;  1LAP A;  5CB5 A;  4ABL A;  1HJZ A;  4ZI6 A;  5HIH A;  5FSZ A;  1ZR3 A;  1BLL E;  4JLL A;  2J9A A;  5FSY A;  3KQZ A;  2EEE A; 
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similar chains in the Genus database (?% sequence similarity)
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