3GQEA

Crystal structure of macro domain of venezuelan equine encephalitis virus
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
162
structure length
162
Chain Sequence
MKAPSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQPIEVGKARLVKGAAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEAVARRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Non-structural protein 3
publication title The crystal structures of Chikungunya and Venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket
pubmed doi rcsb
source organism Venezuelan equine encephalitis virus
total genus 53
structure length 162
sequence length 162
chains with identical sequence B
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3gqeA00
3EWPA 4ZI6A 3KQXA 3T8WA 3Q6ZA 2FAVA 3GQEA 4ETJA 4ZX8A 4X2TA 1LAMA 4ZY2A 1BPMA 3H8GA 2FXKA 4ABLA 5AILA 5E3BA 5HIHA 4J5SA 3KR4A 2LGRA 4ZY1A 3EWQA 5CMSA 1LAPA 4ZY0A 5FSXA 4ABKA 3EKEA 4J5QA 4JCAA 3PEIA 5HOLA 2AFCA 1TXZA 3SIIA 3EJFA 3IIFA 4KYBA 1GYTA 3ETIA 2EWBA 3KR5A 2X47A 3GPQA 1BLLE 3Q71A 1ZR3A 1HJZA 4ZYQA 2DX6A 4ETKA 4GVVA 5FSZA 1YD9A 4J5RA 2BFRA 2XD7A 3EJGA 2VRIA 5FSVA 5CBMA 3SIGA 4R76A 3V45A 1BPNA 3EW5A 1ZR5A 3IJ3A 1NJRA 3GPGA 5CB5A 4JGKA 3H8EA 4K0CA 4GUAA 4JVVA 4ESSA 1TY8A 2L8RA 3V2BA 4IQYA 4R7MA 3JZTA 2ACFA 4JLLA 4J4ZA 3SIJA 3GPOA 2BFQA 4R6TA 4K3NA 5CB3A 1LCPA 2J9AA 3EWOA 3KZWA 3VFQA 4KSIA 1SPVA 3JRUA 1LANA 4D86A 3GQOA 4GVWA 3SIHA 4ZX9A 4UMLA 2FG1A 3IIDA 5D8NA 2EEEA 3EWRA 3H8FA 5DUSA 5FSYA 5FSUA 1VHUA 4TU0A 3KQZA
chains in the Genus database with same CATH superfamily
3EWPA 2JZEA 4ZI6A 3KQXA 3T8WA 3Q6ZA 2FAVA 3GQEA 4ETJA 4ZX8A 4X2TA 1LAMA 4ZY2A 1BPMA 3H8GA 2FXKA 4ABLA 5AILA 5E3BA 5HIHA 4J5SA 3KR4A 2LGRA 4ZY1A 3EWQA 5CMSA 1LAPA 4ZY0A 5FSXA 4ABKA 3EKEA 2KQVA 4J5QA 4JCAA 3PEIA 5HOLA 2AFCA 2JZFA 1TXZA 3SIIA 3EJFA 3IIFA 4KYBA 1GYTA 3ETIA 2EWBA 3KR5A 2X47A 3GPQA 1BLLE 3Q71A 1ZR3A 1HJZA 4ZYQA 2DX6A 4ETKA 4GVVA 5FSZA 1YD9A 4J5RA 2BFRA 2XD7A 3EJGA 2VRIA 5FSVA 5CBMA 2JZDA 3SIGA 4R76A 3V45A 1BPNA 3EW5A 1ZR5A 3IJ3A 1NJRA 3GPGA 5CB5A 4JGKA 3H8EA 4K0CA 2W2GA 4GUAA 4JVVA 4ESSA 1TY8A 2L8RA 3V2BA 4IQYA 4R7MA 3JZTA 2ACFA 4JLLA 2WCTA 4J4ZA 3SIJA 3GPOA 2BFQA 4R6TA 4K3NA 5CB3A 1LCPA 2J9AA 3EWOA 3KZWA 3VFQA 4KSIA 1SPVA 3JRUA 1LANA 4D86A 3GQOA 4GVWA 3SIHA 4ZX9A 4UMLA 2FG1A 2RNKA 3IIDA 5D8NA 2EEEA 3EWRA 3H8FA 5DUSA 5FSYA 5FSUA 1VHUA 4TU0A 3KQZA
chains in the Genus database with same CATH topology
3EWPA 4ZI6A 3KQXA 3T8WA 3Q6ZA 2FAVA 3GQEA 4ETJA 4ZX8A 4X2TA 1LAMA 4ZY2A 1BPMA 3H8GA 2FXKA 4ABLA 5AILA 5E3BA 5HIHA 4J5SA 3KR4A 2LGRA 4ZY1A 3EWQA 5CMSA 1LAPA 4ZY0A 5FSXA 4ABKA 3EKEA 4J5QA 4JCAA 3PEIA 5HOLA 2AFCA 1TXZA 3SIIA 3EJFA 3IIFA 4KYBA 1GYTA 3ETIA 2EWBA 3KR5A 2X47A 3GPQA 1BLLE 3Q71A 1ZR3A 1HJZA 4ZYQA 2DX6A 4ETKA 4GVVA 5FSZA 1YD9A 4J5RA 2BFRA 2XD7A 3EJGA 2VRIA 5FSVA 5CBMA 3SIGA 4R76A 3V45A 1BPNA 3EW5A 1ZR5A 3IJ3A 1NJRA 3GPGA 5CB5A 4JGKA 3H8EA 4K0CA 4GUAA 4JVVA 4ESSA 1TY8A 2L8RA 3V2BA 4IQYA 4R7MA 3JZTA 2ACFA 4JLLA 4J4ZA 3SIJA 3GPOA 2BFQA 4R6TA 4K3NA 5CB3A 1LCPA 2J9AA 3EWOA 3KZWA 3VFQA 4KSIA 1SPVA 3JRUA 1LANA 4D86A 3GQOA 4GVWA 3SIHA 4ZX9A 4UMLA 2FG1A 3IIDA 5D8NA 2EEEA 3EWRA 3H8FA 5DUSA 5FSYA 5FSUA 1VHUA 4TU0A 3KQZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EWP A;  4ZI6 A;  3KQX A;  3T8W A;  3Q6Z A;  2FAV A;  3GQE A;  4ETJ A;  4ZX8 A;  4X2T A;  1LAM A;  4ZY2 A;  1BPM A;  3H8G A;  2FXK A;  4ABL A;  5AIL A;  5E3B A;  5HIH A;  4J5S A;  3KR4 A;  2LGR A;  4ZY1 A;  3EWQ A;  5CMS A;  1LAP A;  4ZY0 A;  5FSX A;  4ABK A;  3EKE A;  4J5Q A;  4JCA A;  3PEI A;  5HOL A;  2AFC A;  1TXZ A;  3SII A;  3EJF A;  3IIF A;  4KYB A;  1GYT A;  3ETI A;  2EWB A;  3KR5 A;  2X47 A;  3GPQ A;  1BLL E;  3Q71 A;  1ZR3 A;  1HJZ A;  4ZYQ A;  2DX6 A;  4ETK A;  4GVV A;  5FSZ A;  1YD9 A;  4J5R A;  2BFR A;  2XD7 A;  3EJG A;  2VRI A;  5FSV A;  5CBM A;  3SIG A;  4R76 A;  3V45 A;  1BPN A;  3EW5 A;  1ZR5 A;  3IJ3 A;  1NJR A;  3GPG A;  5CB5 A;  4JGK A;  3H8E A;  4K0C A;  4GUA A;  4JVV A;  4ESS A;  1TY8 A;  2L8R A;  3V2B A;  4IQY A;  4R7M A;  3JZT A;  2ACF A;  4JLL A;  4J4Z A;  3SIJ A;  3GPO A;  2BFQ A;  4R6T A;  4K3N A;  5CB3 A;  1LCP A;  2J9A A;  3EWO A;  3KZW A;  3VFQ A;  4KSI A;  1SPV A;  3JRU A;  1LAN A;  4D86 A;  3GQO A;  4GVW A;  3SIH A;  4ZX9 A;  4UML A;  2FG1 A;  3IID A;  5D8N A;  2EEE A;  3EWR A;  3H8F A;  5DUS A;  5FSY A;  5FSU A;  1VHU A;  4TU0 A;  3KQZ A; 
#chains in the Genus database with same CATH topology
 3EWP A;  2JZE A;  4ZI6 A;  3KQX A;  3T8W A;  3Q6Z A;  2FAV A;  3GQE A;  4ETJ A;  4ZX8 A;  4X2T A;  1LAM A;  4ZY2 A;  1BPM A;  3H8G A;  2FXK A;  4ABL A;  5AIL A;  5E3B A;  5HIH A;  4J5S A;  3KR4 A;  2LGR A;  4ZY1 A;  3EWQ A;  5CMS A;  1LAP A;  4ZY0 A;  5FSX A;  4ABK A;  3EKE A;  2KQV A;  4J5Q A;  4JCA A;  3PEI A;  5HOL A;  2AFC A;  2JZF A;  1TXZ A;  3SII A;  3EJF A;  3IIF A;  4KYB A;  1GYT A;  3ETI A;  2EWB A;  3KR5 A;  2X47 A;  3GPQ A;  1BLL E;  3Q71 A;  1ZR3 A;  1HJZ A;  4ZYQ A;  2DX6 A;  4ETK A;  4GVV A;  5FSZ A;  1YD9 A;  4J5R A;  2BFR A;  2XD7 A;  3EJG A;  2VRI A;  5FSV A;  5CBM A;  2JZD A;  3SIG A;  4R76 A;  3V45 A;  1BPN A;  3EW5 A;  1ZR5 A;  3IJ3 A;  1NJR A;  3GPG A;  5CB5 A;  4JGK A;  3H8E A;  4K0C A;  2W2G A;  4GUA A;  4JVV A;  4ESS A;  1TY8 A;  2L8R A;  3V2B A;  4IQY A;  4R7M A;  3JZT A;  2ACF A;  4JLL A;  2WCT A;  4J4Z A;  3SIJ A;  3GPO A;  2BFQ A;  4R6T A;  4K3N A;  5CB3 A;  1LCP A;  2J9A A;  3EWO A;  3KZW A;  3VFQ A;  4KSI A;  1SPV A;  3JRU A;  1LAN A;  4D86 A;  3GQO A;  4GVW A;  3SIH A;  4ZX9 A;  4UML A;  2FG1 A;  2RNK A;  3IID A;  5D8N A;  2EEE A;  3EWR A;  3H8F A;  5DUS A;  5FSY A;  5FSU A;  1VHU A;  4TU0 A;  3KQZ A; 
#chains in the Genus database with same CATH homology
 3EWP A;  4ZI6 A;  3KQX A;  3T8W A;  3Q6Z A;  2FAV A;  3GQE A;  4ETJ A;  4ZX8 A;  4X2T A;  1LAM A;  4ZY2 A;  1BPM A;  3H8G A;  2FXK A;  4ABL A;  5AIL A;  5E3B A;  5HIH A;  4J5S A;  3KR4 A;  2LGR A;  4ZY1 A;  3EWQ A;  5CMS A;  1LAP A;  4ZY0 A;  5FSX A;  4ABK A;  3EKE A;  4J5Q A;  4JCA A;  3PEI A;  5HOL A;  2AFC A;  1TXZ A;  3SII A;  3EJF A;  3IIF A;  4KYB A;  1GYT A;  3ETI A;  2EWB A;  3KR5 A;  2X47 A;  3GPQ A;  1BLL E;  3Q71 A;  1ZR3 A;  1HJZ A;  4ZYQ A;  2DX6 A;  4ETK A;  4GVV A;  5FSZ A;  1YD9 A;  4J5R A;  2BFR A;  2XD7 A;  3EJG A;  2VRI A;  5FSV A;  5CBM A;  3SIG A;  4R76 A;  3V45 A;  1BPN A;  3EW5 A;  1ZR5 A;  3IJ3 A;  1NJR A;  3GPG A;  5CB5 A;  4JGK A;  3H8E A;  4K0C A;  4GUA A;  4JVV A;  4ESS A;  1TY8 A;  2L8R A;  3V2B A;  4IQY A;  4R7M A;  3JZT A;  2ACF A;  4JLL A;  4J4Z A;  3SIJ A;  3GPO A;  2BFQ A;  4R6T A;  4K3N A;  5CB3 A;  1LCP A;  2J9A A;  3EWO A;  3KZW A;  3VFQ A;  4KSI A;  1SPV A;  3JRU A;  1LAN A;  4D86 A;  3GQO A;  4GVW A;  3SIH A;  4ZX9 A;  4UML A;  2FG1 A;  3IID A;  5D8N A;  2EEE A;  3EWR A;  3H8F A;  5DUS A;  5FSY A;  5FSU A;  1VHU A;  4TU0 A;  3KQZ A; 
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similar chains in the Genus database (?% sequence similarity)
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