5FSYA

Crystal structure of trypanosoma brucei macrodomain in complex with adp-ribose
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
249
structure length
232
Chain Sequence
EFVTYSGEESPTRTRILSAALSPAERAIFDVPIEKWLSIDRSSLSGWKCAVPRPVTIEQLRPVDPSDAILRHIALYRGPVTDLQLDAIVNAANTRCLGGGGVDGAIHRVAGPLLLRECATFNGCQTGECRLTKGYQLPARYVLHTVGPVGERPDMLRKCYRSILSLALKNGLRSIGFCCVSTGVYGYPLLPATRIALGETRKFLEEHGGALDMCCFACFQEDEYKTYEKCVG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords MACRODOMAIN
publication title Proximal Adp-Ribose Hydrolysis in Trypanosomatids is Catalyzed by a Macrodomain.
pubmed doi rcsb
source organism Trypanosoma brucei
total genus 82
structure length 232
sequence length 249
ec nomenclature
pdb deposition date 2016-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 5fsyA00
3EWQA 5FSYA 4ZYQA 3EWOA 4R7MA 3KQZA 4J5QA 5FSXA 2FXKA 4ZX8A 3GPQA 5FSVA 3EJFA 1BLLE 5FSZA 4JGKA 2BFRA 2VRIA 5E3BA 3ETIA 1TY8A 4ZY1A 1HJZA 1ZR3A 4ZX9A 4X2TA 4GVVA 3H8FA 5CB3A 1TXZA 4JLLA 5CMSA 1LAPA 4KSIA 3EKEA 4ABKA 3IIFA 2J9AA 2ACFA 4J5SA 3GQEA 3SIJA 3KR5A 3GPOA 4GVWA 3Q6ZA 3Q71A 2LGRA 3V45A 2FAVA 4JVVA 3EWPA 2XD7A 3SIHA 4TU0A 5CB5A 2X47A 1BPNA 2FG1A 4ZY2A 3VFQA 4R6TA 3H8GA 3IIDA 1SPVA 4J5RA 2EWBA 1GYTA 3H8EA 5D8NA 4ABLA 3SIGA 3KR4A 3GPGA 3KQXA 3GQOA 3V2BA 3JRUA 4ZY0A 4ETJA 5HOLA 4ESSA 2DX6A 4JCAA 3JZTA 3EW5A 4KYBA 4D86A 4ZI6A 1LAMA 5CBMA 4IQYA 1BPMA 3PEIA 3SIIA 3EWRA 2AFCA 2BFQA 2EEEA 5HIHA 3T8WA 2L8RA 1ZR5A 3KZWA 5FSUA 1LCPA 4GUAA 5AILA 5DUSA 1NJRA 1VHUA 4K0CA 1LANA 4K3NA 4R76A 3IJ3A 4UMLA 4ETKA 3EJGA 4J4ZA 1YD9A
chains in the Genus database with same CATH superfamily
3EWQA 5FSYA 4ZYQA 3EWOA 4R7MA 3KQZA 4J5QA 5FSXA 2FXKA 4ZX8A 3GPQA 5FSVA 3EJFA 1BLLE 5FSZA 4JGKA 2BFRA 2VRIA 5E3BA 3ETIA 1TY8A 4ZY1A 1HJZA 2WCTA 1ZR3A 4ZX9A 4X2TA 4GVVA 3H8FA 5CB3A 1TXZA 4JLLA 5CMSA 1LAPA 4KSIA 3EKEA 4ABKA 3IIFA 2J9AA 2ACFA 4J5SA 3GQEA 3SIJA 3KR5A 3GPOA 4GVWA 3Q6ZA 3Q71A 2LGRA 3V45A 2FAVA 4JVVA 3EWPA 2XD7A 3SIHA 2W2GA 2KQVA 4TU0A 5CB5A 2X47A 1BPNA 2FG1A 4ZY2A 3VFQA 4R6TA 3H8GA 3IIDA 1SPVA 4J5RA 2EWBA 1GYTA 3H8EA 5D8NA 4ABLA 3SIGA 3KR4A 3GPGA 3KQXA 3GQOA 3V2BA 3JRUA 4ZY0A 4ETJA 5HOLA 4ESSA 2DX6A 4JCAA 3JZTA 3EW5A 4KYBA 4D86A 4ZI6A 1LAMA 5CBMA 4IQYA 1BPMA 3PEIA 3SIIA 3EWRA 2AFCA 2BFQA 2EEEA 5HIHA 3T8WA 2L8RA 2JZEA 1ZR5A 3KZWA 5FSUA 1LCPA 4GUAA 5AILA 5DUSA 1NJRA 1VHUA 4K0CA 1LANA 4K3NA 4R76A 3IJ3A 2JZFA 4UMLA 4ETKA 2RNKA 2JZDA 3EJGA 4J4ZA 1YD9A
chains in the Genus database with same CATH topology
3EWQA 5FSYA 4ZYQA 3EWOA 4R7MA 3KQZA 4J5QA 5FSXA 2FXKA 4ZX8A 3GPQA 5FSVA 3EJFA 1BLLE 5FSZA 4JGKA 2BFRA 2VRIA 5E3BA 3ETIA 1TY8A 4ZY1A 1HJZA 1ZR3A 4ZX9A 4X2TA 4GVVA 3H8FA 5CB3A 1TXZA 4JLLA 5CMSA 1LAPA 4KSIA 3EKEA 4ABKA 3IIFA 2J9AA 2ACFA 4J5SA 3GQEA 3SIJA 3KR5A 3GPOA 4GVWA 3Q6ZA 3Q71A 2LGRA 3V45A 2FAVA 4JVVA 3EWPA 2XD7A 3SIHA 4TU0A 5CB5A 2X47A 1BPNA 2FG1A 4ZY2A 3VFQA 4R6TA 3H8GA 3IIDA 1SPVA 4J5RA 2EWBA 1GYTA 3H8EA 5D8NA 4ABLA 3SIGA 3KR4A 3GPGA 3KQXA 3GQOA 3V2BA 3JRUA 4ZY0A 4ETJA 5HOLA 4ESSA 2DX6A 4JCAA 3JZTA 3EW5A 4KYBA 4D86A 4ZI6A 1LAMA 5CBMA 4IQYA 1BPMA 3PEIA 3SIIA 3EWRA 2AFCA 2BFQA 2EEEA 5HIHA 3T8WA 2L8RA 1ZR5A 3KZWA 5FSUA 1LCPA 4GUAA 5AILA 5DUSA 1NJRA 1VHUA 4K0CA 1LANA 4K3NA 4R76A 3IJ3A 4UMLA 4ETKA 3EJGA 4J4ZA 1YD9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EWQ A;  5FSY A;  4ZYQ A;  3EWO A;  4R7M A;  3KQZ A;  4J5Q A;  5FSX A;  2FXK A;  4ZX8 A;  3GPQ A;  5FSV A;  3EJF A;  1BLL E;  5FSZ A;  4JGK A;  2BFR A;  2VRI A;  5E3B A;  3ETI A;  1TY8 A;  4ZY1 A;  1HJZ A;  1ZR3 A;  4ZX9 A;  4X2T A;  4GVV A;  3H8F A;  5CB3 A;  1TXZ A;  4JLL A;  5CMS A;  1LAP A;  4KSI A;  3EKE A;  4ABK A;  3IIF A;  2J9A A;  2ACF A;  4J5S A;  3GQE A;  3SIJ A;  3KR5 A;  3GPO A;  4GVW A;  3Q6Z A;  3Q71 A;  2LGR A;  3V45 A;  2FAV A;  4JVV A;  3EWP A;  2XD7 A;  3SIH A;  4TU0 A;  5CB5 A;  2X47 A;  1BPN A;  2FG1 A;  4ZY2 A;  3VFQ A;  4R6T A;  3H8G A;  3IID A;  1SPV A;  4J5R A;  2EWB A;  1GYT A;  3H8E A;  5D8N A;  4ABL A;  3SIG A;  3KR4 A;  3GPG A;  3KQX A;  3GQO A;  3V2B A;  3JRU A;  4ZY0 A;  4ETJ A;  5HOL A;  4ESS A;  2DX6 A;  4JCA A;  3JZT A;  3EW5 A;  4KYB A;  4D86 A;  4ZI6 A;  1LAM A;  5CBM A;  4IQY A;  1BPM A;  3PEI A;  3SII A;  3EWR A;  2AFC A;  2BFQ A;  2EEE A;  5HIH A;  3T8W A;  2L8R A;  1ZR5 A;  3KZW A;  5FSU A;  1LCP A;  4GUA A;  5AIL A;  5DUS A;  1NJR A;  1VHU A;  4K0C A;  1LAN A;  4K3N A;  4R76 A;  3IJ3 A;  4UML A;  4ETK A;  3EJG A;  4J4Z A;  1YD9 A; 
#chains in the Genus database with same CATH topology
 3EWQ A;  5FSY A;  4ZYQ A;  3EWO A;  4R7M A;  3KQZ A;  4J5Q A;  5FSX A;  2FXK A;  4ZX8 A;  3GPQ A;  5FSV A;  3EJF A;  1BLL E;  5FSZ A;  4JGK A;  2BFR A;  2VRI A;  5E3B A;  3ETI A;  1TY8 A;  4ZY1 A;  1HJZ A;  2WCT A;  1ZR3 A;  4ZX9 A;  4X2T A;  4GVV A;  3H8F A;  5CB3 A;  1TXZ A;  4JLL A;  5CMS A;  1LAP A;  4KSI A;  3EKE A;  4ABK A;  3IIF A;  2J9A A;  2ACF A;  4J5S A;  3GQE A;  3SIJ A;  3KR5 A;  3GPO A;  4GVW A;  3Q6Z A;  3Q71 A;  2LGR A;  3V45 A;  2FAV A;  4JVV A;  3EWP A;  2XD7 A;  3SIH A;  2W2G A;  2KQV A;  4TU0 A;  5CB5 A;  2X47 A;  1BPN A;  2FG1 A;  4ZY2 A;  3VFQ A;  4R6T A;  3H8G A;  3IID A;  1SPV A;  4J5R A;  2EWB A;  1GYT A;  3H8E A;  5D8N A;  4ABL A;  3SIG A;  3KR4 A;  3GPG A;  3KQX A;  3GQO A;  3V2B A;  3JRU A;  4ZY0 A;  4ETJ A;  5HOL A;  4ESS A;  2DX6 A;  4JCA A;  3JZT A;  3EW5 A;  4KYB A;  4D86 A;  4ZI6 A;  1LAM A;  5CBM A;  4IQY A;  1BPM A;  3PEI A;  3SII A;  3EWR A;  2AFC A;  2BFQ A;  2EEE A;  5HIH A;  3T8W A;  2L8R A;  2JZE A;  1ZR5 A;  3KZW A;  5FSU A;  1LCP A;  4GUA A;  5AIL A;  5DUS A;  1NJR A;  1VHU A;  4K0C A;  1LAN A;  4K3N A;  4R76 A;  3IJ3 A;  2JZF A;  4UML A;  4ETK A;  2RNK A;  2JZD A;  3EJG A;  4J4Z A;  1YD9 A; 
#chains in the Genus database with same CATH homology
 3EWQ A;  5FSY A;  4ZYQ A;  3EWO A;  4R7M A;  3KQZ A;  4J5Q A;  5FSX A;  2FXK A;  4ZX8 A;  3GPQ A;  5FSV A;  3EJF A;  1BLL E;  5FSZ A;  4JGK A;  2BFR A;  2VRI A;  5E3B A;  3ETI A;  1TY8 A;  4ZY1 A;  1HJZ A;  1ZR3 A;  4ZX9 A;  4X2T A;  4GVV A;  3H8F A;  5CB3 A;  1TXZ A;  4JLL A;  5CMS A;  1LAP A;  4KSI A;  3EKE A;  4ABK A;  3IIF A;  2J9A A;  2ACF A;  4J5S A;  3GQE A;  3SIJ A;  3KR5 A;  3GPO A;  4GVW A;  3Q6Z A;  3Q71 A;  2LGR A;  3V45 A;  2FAV A;  4JVV A;  3EWP A;  2XD7 A;  3SIH A;  4TU0 A;  5CB5 A;  2X47 A;  1BPN A;  2FG1 A;  4ZY2 A;  3VFQ A;  4R6T A;  3H8G A;  3IID A;  1SPV A;  4J5R A;  2EWB A;  1GYT A;  3H8E A;  5D8N A;  4ABL A;  3SIG A;  3KR4 A;  3GPG A;  3KQX A;  3GQO A;  3V2B A;  3JRU A;  4ZY0 A;  4ETJ A;  5HOL A;  4ESS A;  2DX6 A;  4JCA A;  3JZT A;  3EW5 A;  4KYB A;  4D86 A;  4ZI6 A;  1LAM A;  5CBM A;  4IQY A;  1BPM A;  3PEI A;  3SII A;  3EWR A;  2AFC A;  2BFQ A;  2EEE A;  5HIH A;  3T8W A;  2L8R A;  1ZR5 A;  3KZW A;  5FSU A;  1LCP A;  4GUA A;  5AIL A;  5DUS A;  1NJR A;  1VHU A;  4K0C A;  1LAN A;  4K3N A;  4R76 A;  3IJ3 A;  4UML A;  4ETK A;  3EJG A;  4J4Z A;  1YD9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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