5HIHA

Crystal structure of the macro domain in middle-east respiratory syndrome coronavirus
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
167
structure length
167
Chain Sequence
MDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
source organism Middle east respiratory syndrome coronavirus
publication title Structural and mutational analysis of the interaction between the Middle-East respiratory syndrome coronavirus (MERS-CoV) papain-like protease and human ubiquitin.
pubmed doi rcsb
molecule keywords ORF1a
total genus 57
structure length 167
sequence length 167
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2016-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 5hihA00
4ETJA 4ZI6A 1LAMA 4K3NA 3KQXA 1SPVA 1ZR3A 2FXKA 1GYTA 1ZR5A 5HIHA 4J4ZA 2AFCA 3GPGA 3Q71A 2EWBA 4TU0A 5CMSA 2LGRA 4IQYA 2DX6A 2EEEA 5AILA 4ZX9A 3JRUA 2FAVA 3H8EA 3SIJA 4JGKA 1BPNA 4GVVA 3H8FA 1YD9A 5CBMA 3EJGA 1LAPA 3SIGA 5CB3A 2ACFA 4R76A 5HOLA 4R7MA 2VRIA 4UMLA 4ZY1A 3KR4A 4JCAA 3ETIA 4ZY2A 1TXZA 3EWPA 5FSVA 5FSZA 1BPMA 3VFQA 1VHUA 4GUAA 4ESSA 3PEIA 4ETKA 4KSIA 4ZY0A 3V2BA 4X2TA 4J5SA 4ZX8A 4K0CA 4J5RA 3GPOA 3H8GA 2X47A 4ABKA 3GQOA 5FSXA 5CB5A 3T8WA 3GQEA 3KZWA 3EWQA 3EW5A 3KQZA 4D86A 3IIFA 3SIHA 1NJRA 5E3BA 3EWRA 3KR5A 3Q6ZA 4JLLA 4R6TA 3IIDA 4ABLA 2J9AA 2L8RA 3V45A 3EWOA 1TY8A 3JZTA 3SIIA 4J5QA 2XD7A 4JVVA 3GPQA 3IJ3A 1LCPA 2FG1A 4KYBA 4ZYQA 1LANA 5FSUA 5DUSA 1HJZA 2BFRA 3EKEA 4GVWA 2BFQA 5D8NA 1BLLE 5FSYA 3EJFA
chains in the Genus database with same CATH superfamily
4ETJA 4ZI6A 1LAMA 4K3NA 3KQXA 1SPVA 1ZR3A 2FXKA 1GYTA 1ZR5A 5HIHA 4J4ZA 2AFCA 3GPGA 3Q71A 2EWBA 4TU0A 5CMSA 2LGRA 2WCTA 4IQYA 2DX6A 2EEEA 5AILA 4ZX9A 3JRUA 2FAVA 3H8EA 3SIJA 4JGKA 1BPNA 4GVVA 3H8FA 1YD9A 5CBMA 3EJGA 1LAPA 2RNKA 3SIGA 5CB3A 2ACFA 4R76A 5HOLA 4R7MA 2JZDA 2VRIA 4UMLA 4ZY1A 3KR4A 4JCAA 3ETIA 4ZY2A 1TXZA 3EWPA 5FSVA 5FSZA 1BPMA 3VFQA 2W2GA 1VHUA 4GUAA 4ESSA 2JZFA 3PEIA 4ETKA 4KSIA 4ZY0A 3V2BA 4X2TA 4J5SA 2KQVA 2JZEA 4ZX8A 4K0CA 4J5RA 3GPOA 3H8GA 2X47A 4ABKA 3GQOA 5FSXA 5CB5A 3T8WA 3GQEA 3KZWA 3EWQA 3EW5A 3KQZA 4D86A 3IIFA 3SIHA 1NJRA 5E3BA 3EWRA 3KR5A 3Q6ZA 4JLLA 4R6TA 3IIDA 4ABLA 2J9AA 2L8RA 3V45A 3EWOA 1TY8A 3JZTA 3SIIA 4J5QA 2XD7A 4JVVA 3GPQA 3IJ3A 1LCPA 2FG1A 4KYBA 4ZYQA 1LANA 5FSUA 5DUSA 1HJZA 2BFRA 3EKEA 4GVWA 2BFQA 5D8NA 1BLLE 5FSYA 3EJFA
chains in the Genus database with same CATH topology
4ETJA 4ZI6A 1LAMA 4K3NA 3KQXA 1SPVA 1ZR3A 2FXKA 1GYTA 1ZR5A 5HIHA 4J4ZA 2AFCA 3GPGA 3Q71A 2EWBA 4TU0A 5CMSA 2LGRA 4IQYA 2DX6A 2EEEA 5AILA 4ZX9A 3JRUA 2FAVA 3H8EA 3SIJA 4JGKA 1BPNA 4GVVA 3H8FA 1YD9A 5CBMA 3EJGA 1LAPA 3SIGA 5CB3A 2ACFA 4R76A 5HOLA 4R7MA 2VRIA 4UMLA 4ZY1A 3KR4A 4JCAA 3ETIA 4ZY2A 1TXZA 3EWPA 5FSVA 5FSZA 1BPMA 3VFQA 1VHUA 4GUAA 4ESSA 3PEIA 4ETKA 4KSIA 4ZY0A 3V2BA 4X2TA 4J5SA 4ZX8A 4K0CA 4J5RA 3GPOA 3H8GA 2X47A 4ABKA 3GQOA 5FSXA 5CB5A 3T8WA 3GQEA 3KZWA 3EWQA 3EW5A 3KQZA 4D86A 3IIFA 3SIHA 1NJRA 5E3BA 3EWRA 3KR5A 3Q6ZA 4JLLA 4R6TA 3IIDA 4ABLA 2J9AA 2L8RA 3V45A 3EWOA 1TY8A 3JZTA 3SIIA 4J5QA 2XD7A 4JVVA 3GPQA 3IJ3A 1LCPA 2FG1A 4KYBA 4ZYQA 1LANA 5FSUA 5DUSA 1HJZA 2BFRA 3EKEA 4GVWA 2BFQA 5D8NA 1BLLE 5FSYA 3EJFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ETJ A;  4ZI6 A;  1LAM A;  4K3N A;  3KQX A;  1SPV A;  1ZR3 A;  2FXK A;  1GYT A;  1ZR5 A;  5HIH A;  4J4Z A;  2AFC A;  3GPG A;  3Q71 A;  2EWB A;  4TU0 A;  5CMS A;  2LGR A;  4IQY A;  2DX6 A;  2EEE A;  5AIL A;  4ZX9 A;  3JRU A;  2FAV A;  3H8E A;  3SIJ A;  4JGK A;  1BPN A;  4GVV A;  3H8F A;  1YD9 A;  5CBM A;  3EJG A;  1LAP A;  3SIG A;  5CB3 A;  2ACF A;  4R76 A;  5HOL A;  4R7M A;  2VRI A;  4UML A;  4ZY1 A;  3KR4 A;  4JCA A;  3ETI A;  4ZY2 A;  1TXZ A;  3EWP A;  5FSV A;  5FSZ A;  1BPM A;  3VFQ A;  1VHU A;  4GUA A;  4ESS A;  3PEI A;  4ETK A;  4KSI A;  4ZY0 A;  3V2B A;  4X2T A;  4J5S A;  4ZX8 A;  4K0C A;  4J5R A;  3GPO A;  3H8G A;  2X47 A;  4ABK A;  3GQO A;  5FSX A;  5CB5 A;  3T8W A;  3GQE A;  3KZW A;  3EWQ A;  3EW5 A;  3KQZ A;  4D86 A;  3IIF A;  3SIH A;  1NJR A;  5E3B A;  3EWR A;  3KR5 A;  3Q6Z A;  4JLL A;  4R6T A;  3IID A;  4ABL A;  2J9A A;  2L8R A;  3V45 A;  3EWO A;  1TY8 A;  3JZT A;  3SII A;  4J5Q A;  2XD7 A;  4JVV A;  3GPQ A;  3IJ3 A;  1LCP A;  2FG1 A;  4KYB A;  4ZYQ A;  1LAN A;  5FSU A;  5DUS A;  1HJZ A;  2BFR A;  3EKE A;  4GVW A;  2BFQ A;  5D8N A;  1BLL E;  5FSY A;  3EJF A; 
#chains in the Genus database with same CATH topology
 4ETJ A;  4ZI6 A;  1LAM A;  4K3N A;  3KQX A;  1SPV A;  1ZR3 A;  2FXK A;  1GYT A;  1ZR5 A;  5HIH A;  4J4Z A;  2AFC A;  3GPG A;  3Q71 A;  2EWB A;  4TU0 A;  5CMS A;  2LGR A;  2WCT A;  4IQY A;  2DX6 A;  2EEE A;  5AIL A;  4ZX9 A;  3JRU A;  2FAV A;  3H8E A;  3SIJ A;  4JGK A;  1BPN A;  4GVV A;  3H8F A;  1YD9 A;  5CBM A;  3EJG A;  1LAP A;  2RNK A;  3SIG A;  5CB3 A;  2ACF A;  4R76 A;  5HOL A;  4R7M A;  2JZD A;  2VRI A;  4UML A;  4ZY1 A;  3KR4 A;  4JCA A;  3ETI A;  4ZY2 A;  1TXZ A;  3EWP A;  5FSV A;  5FSZ A;  1BPM A;  3VFQ A;  2W2G A;  1VHU A;  4GUA A;  4ESS A;  2JZF A;  3PEI A;  4ETK A;  4KSI A;  4ZY0 A;  3V2B A;  4X2T A;  4J5S A;  2KQV A;  2JZE A;  4ZX8 A;  4K0C A;  4J5R A;  3GPO A;  3H8G A;  2X47 A;  4ABK A;  3GQO A;  5FSX A;  5CB5 A;  3T8W A;  3GQE A;  3KZW A;  3EWQ A;  3EW5 A;  3KQZ A;  4D86 A;  3IIF A;  3SIH A;  1NJR A;  5E3B A;  3EWR A;  3KR5 A;  3Q6Z A;  4JLL A;  4R6T A;  3IID A;  4ABL A;  2J9A A;  2L8R A;  3V45 A;  3EWO A;  1TY8 A;  3JZT A;  3SII A;  4J5Q A;  2XD7 A;  4JVV A;  3GPQ A;  3IJ3 A;  1LCP A;  2FG1 A;  4KYB A;  4ZYQ A;  1LAN A;  5FSU A;  5DUS A;  1HJZ A;  2BFR A;  3EKE A;  4GVW A;  2BFQ A;  5D8N A;  1BLL E;  5FSY A;  3EJF A; 
#chains in the Genus database with same CATH homology
 4ETJ A;  4ZI6 A;  1LAM A;  4K3N A;  3KQX A;  1SPV A;  1ZR3 A;  2FXK A;  1GYT A;  1ZR5 A;  5HIH A;  4J4Z A;  2AFC A;  3GPG A;  3Q71 A;  2EWB A;  4TU0 A;  5CMS A;  2LGR A;  4IQY A;  2DX6 A;  2EEE A;  5AIL A;  4ZX9 A;  3JRU A;  2FAV A;  3H8E A;  3SIJ A;  4JGK A;  1BPN A;  4GVV A;  3H8F A;  1YD9 A;  5CBM A;  3EJG A;  1LAP A;  3SIG A;  5CB3 A;  2ACF A;  4R76 A;  5HOL A;  4R7M A;  2VRI A;  4UML A;  4ZY1 A;  3KR4 A;  4JCA A;  3ETI A;  4ZY2 A;  1TXZ A;  3EWP A;  5FSV A;  5FSZ A;  1BPM A;  3VFQ A;  1VHU A;  4GUA A;  4ESS A;  3PEI A;  4ETK A;  4KSI A;  4ZY0 A;  3V2B A;  4X2T A;  4J5S A;  4ZX8 A;  4K0C A;  4J5R A;  3GPO A;  3H8G A;  2X47 A;  4ABK A;  3GQO A;  5FSX A;  5CB5 A;  3T8W A;  3GQE A;  3KZW A;  3EWQ A;  3EW5 A;  3KQZ A;  4D86 A;  3IIF A;  3SIH A;  1NJR A;  5E3B A;  3EWR A;  3KR5 A;  3Q6Z A;  4JLL A;  4R6T A;  3IID A;  4ABL A;  2J9A A;  2L8R A;  3V45 A;  3EWO A;  1TY8 A;  3JZT A;  3SII A;  4J5Q A;  2XD7 A;  4JVV A;  3GPQ A;  3IJ3 A;  1LCP A;  2FG1 A;  4KYB A;  4ZYQ A;  1LAN A;  5FSU A;  5DUS A;  1HJZ A;  2BFR A;  3EKE A;  4GVW A;  2BFQ A;  5D8N A;  1BLL E;  5FSY A;  3EJF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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