1TY8A

Crystal structure of yeast ymx7, an adp-ribose-1''-monophosphatase, complexed with adp
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
264
structure length
249
Chain Sequence
KMRIILCDTNEVVTNLWQESIPKYLCIHHGHLQSLMDSMRKGDAHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYLQYPFEPFFPESCKIECQKLGIDIEMLKSFNVEKDAIELLIPRRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical 32.1 kDa protein in ADH3-RCA1 intergenic region
publication title CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YMX7
rcsb
source organism Saccharomyces cerevisiae
total genus 78
structure length 249
sequence length 264
ec nomenclature ec 3.1.3.84: ADP-ribose 1''-phosphate phosphatase.
pdb deposition date 2004-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14519 Macro_2 Macro-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 1ty8A00
3SIJA 1ZR5A 3EW5A 4GVVA 5HOLA 4ZYQA 1BLLE 3KZWA 5CMSA 3EJGA 3SIIA 1ZR3A 3H8FA 1BPNA 4J5QA 3VFQA 4ZX8A 4J5RA 3H8GA 3JRUA 3KR5A 4R6TA 1TY8A 3EWQA 1TXZA 2DX6A 2FAVA 3GQEA 3V45A 3IJ3A 4R76A 4JCAA 3EWPA 2LGRA 1GYTA 4R7MA 3GPQA 3V2BA 4IQYA 5FSXA 3IIDA 3T8WA 3Q71A 1LCPA 5CBMA 4ETKA 4JVVA 3GPGA 2J9AA 2ACFA 2VRIA 2EEEA 2BFQA 4ZY0A 4K0CA 4X2TA 1LAPA 1NJRA 2XD7A 3H8EA 5CB3A 5DUSA 4TU0A 4JGKA 3GPOA 3EWRA 1SPVA 3EKEA 1YD9A 4J5SA 4JLLA 3SIHA 2AFCA 4ZX9A 4J4ZA 5CB5A 2FXKA 4ETJA 1LAMA 4GVWA 4ABLA 2EWBA 2X47A 4ABKA 5E3BA 1VHUA 2L8RA 5AILA 4ESSA 4UMLA 3KQXA 3ETIA 2BFRA 5FSVA 5HIHA 1BPMA 3KR4A 4KYBA 5FSZA 4ZY1A 3EWOA 4D86A 3KQZA 2FG1A 1LANA 1HJZA 3JZTA 5FSUA 5D8NA 3PEIA 3EJFA 4K3NA 4KSIA 4ZY2A 4ZI6A 3GQOA 3IIFA 3Q6ZA 3SIGA 4GUAA 5FSYA
chains in the Genus database with same CATH superfamily
3SIJA 1ZR5A 3EW5A 4GVVA 2KQVA 5HOLA 4ZYQA 1BLLE 2RNKA 3KZWA 5CMSA 3EJGA 3SIIA 1ZR3A 3H8FA 1BPNA 4J5QA 3VFQA 4ZX8A 4J5RA 3H8GA 3JRUA 3KR5A 4R6TA 1TY8A 3EWQA 1TXZA 2DX6A 2FAVA 3GQEA 3V45A 3IJ3A 4R76A 4JCAA 3EWPA 2LGRA 1GYTA 4R7MA 3GPQA 3V2BA 2W2GA 4IQYA 5FSXA 3IIDA 3T8WA 3Q71A 1LCPA 5CBMA 4ETKA 4JVVA 3GPGA 2J9AA 2ACFA 2VRIA 2EEEA 2BFQA 4ZY0A 4K0CA 4X2TA 1LAPA 1NJRA 2XD7A 3H8EA 5CB3A 5DUSA 4TU0A 4JGKA 3GPOA 3EWRA 1SPVA 3EKEA 1YD9A 4J5SA 4JLLA 3SIHA 2AFCA 4ZX9A 4J4ZA 5CB5A 2FXKA 4ETJA 1LAMA 2WCTA 4GVWA 4ABLA 2EWBA 2X47A 4ABKA 5E3BA 1VHUA 2L8RA 5AILA 4ESSA 4UMLA 3KQXA 3ETIA 2BFRA 5FSVA 5HIHA 1BPMA 3KR4A 4KYBA 2JZDA 5FSZA 4ZY1A 3EWOA 4D86A 3KQZA 2FG1A 1LANA 2JZFA 1HJZA 3JZTA 5FSUA 5D8NA 3PEIA 3EJFA 4K3NA 4KSIA 4ZY2A 2JZEA 4ZI6A 3GQOA 3IIFA 3Q6ZA 3SIGA 4GUAA 5FSYA
chains in the Genus database with same CATH topology
3SIJA 1ZR5A 3EW5A 4GVVA 5HOLA 4ZYQA 1BLLE 3KZWA 5CMSA 3EJGA 3SIIA 1ZR3A 3H8FA 1BPNA 4J5QA 3VFQA 4ZX8A 4J5RA 3H8GA 3JRUA 3KR5A 4R6TA 1TY8A 3EWQA 1TXZA 2DX6A 2FAVA 3GQEA 3V45A 3IJ3A 4R76A 4JCAA 3EWPA 2LGRA 1GYTA 4R7MA 3GPQA 3V2BA 4IQYA 5FSXA 3IIDA 3T8WA 3Q71A 1LCPA 5CBMA 4ETKA 4JVVA 3GPGA 2J9AA 2ACFA 2VRIA 2EEEA 2BFQA 4ZY0A 4K0CA 4X2TA 1LAPA 1NJRA 2XD7A 3H8EA 5CB3A 5DUSA 4TU0A 4JGKA 3GPOA 3EWRA 1SPVA 3EKEA 1YD9A 4J5SA 4JLLA 3SIHA 2AFCA 4ZX9A 4J4ZA 5CB5A 2FXKA 4ETJA 1LAMA 4GVWA 4ABLA 2EWBA 2X47A 4ABKA 5E3BA 1VHUA 2L8RA 5AILA 4ESSA 4UMLA 3KQXA 3ETIA 2BFRA 5FSVA 5HIHA 1BPMA 3KR4A 4KYBA 5FSZA 4ZY1A 3EWOA 4D86A 3KQZA 2FG1A 1LANA 1HJZA 3JZTA 5FSUA 5D8NA 3PEIA 3EJFA 4K3NA 4KSIA 4ZY2A 4ZI6A 3GQOA 3IIFA 3Q6ZA 3SIGA 4GUAA 5FSYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SIJ A;  1ZR5 A;  3EW5 A;  4GVV A;  5HOL A;  4ZYQ A;  1BLL E;  3KZW A;  5CMS A;  3EJG A;  3SII A;  1ZR3 A;  3H8F A;  1BPN A;  4J5Q A;  3VFQ A;  4ZX8 A;  4J5R A;  3H8G A;  3JRU A;  3KR5 A;  4R6T A;  1TY8 A;  3EWQ A;  1TXZ A;  2DX6 A;  2FAV A;  3GQE A;  3V45 A;  3IJ3 A;  4R76 A;  4JCA A;  3EWP A;  2LGR A;  1GYT A;  4R7M A;  3GPQ A;  3V2B A;  4IQY A;  5FSX A;  3IID A;  3T8W A;  3Q71 A;  1LCP A;  5CBM A;  4ETK A;  4JVV A;  3GPG A;  2J9A A;  2ACF A;  2VRI A;  2EEE A;  2BFQ A;  4ZY0 A;  4K0C A;  4X2T A;  1LAP A;  1NJR A;  2XD7 A;  3H8E A;  5CB3 A;  5DUS A;  4TU0 A;  4JGK A;  3GPO A;  3EWR A;  1SPV A;  3EKE A;  1YD9 A;  4J5S A;  4JLL A;  3SIH A;  2AFC A;  4ZX9 A;  4J4Z A;  5CB5 A;  2FXK A;  4ETJ A;  1LAM A;  4GVW A;  4ABL A;  2EWB A;  2X47 A;  4ABK A;  5E3B A;  1VHU A;  2L8R A;  5AIL A;  4ESS A;  4UML A;  3KQX A;  3ETI A;  2BFR A;  5FSV A;  5HIH A;  1BPM A;  3KR4 A;  4KYB A;  5FSZ A;  4ZY1 A;  3EWO A;  4D86 A;  3KQZ A;  2FG1 A;  1LAN A;  1HJZ A;  3JZT A;  5FSU A;  5D8N A;  3PEI A;  3EJF A;  4K3N A;  4KSI A;  4ZY2 A;  4ZI6 A;  3GQO A;  3IIF A;  3Q6Z A;  3SIG A;  4GUA A;  5FSY A; 
#chains in the Genus database with same CATH topology
 3SIJ A;  1ZR5 A;  3EW5 A;  4GVV A;  2KQV A;  5HOL A;  4ZYQ A;  1BLL E;  2RNK A;  3KZW A;  5CMS A;  3EJG A;  3SII A;  1ZR3 A;  3H8F A;  1BPN A;  4J5Q A;  3VFQ A;  4ZX8 A;  4J5R A;  3H8G A;  3JRU A;  3KR5 A;  4R6T A;  1TY8 A;  3EWQ A;  1TXZ A;  2DX6 A;  2FAV A;  3GQE A;  3V45 A;  3IJ3 A;  4R76 A;  4JCA A;  3EWP A;  2LGR A;  1GYT A;  4R7M A;  3GPQ A;  3V2B A;  2W2G A;  4IQY A;  5FSX A;  3IID A;  3T8W A;  3Q71 A;  1LCP A;  5CBM A;  4ETK A;  4JVV A;  3GPG A;  2J9A A;  2ACF A;  2VRI A;  2EEE A;  2BFQ A;  4ZY0 A;  4K0C A;  4X2T A;  1LAP A;  1NJR A;  2XD7 A;  3H8E A;  5CB3 A;  5DUS A;  4TU0 A;  4JGK A;  3GPO A;  3EWR A;  1SPV A;  3EKE A;  1YD9 A;  4J5S A;  4JLL A;  3SIH A;  2AFC A;  4ZX9 A;  4J4Z A;  5CB5 A;  2FXK A;  4ETJ A;  1LAM A;  2WCT A;  4GVW A;  4ABL A;  2EWB A;  2X47 A;  4ABK A;  5E3B A;  1VHU A;  2L8R A;  5AIL A;  4ESS A;  4UML A;  3KQX A;  3ETI A;  2BFR A;  5FSV A;  5HIH A;  1BPM A;  3KR4 A;  4KYB A;  2JZD A;  5FSZ A;  4ZY1 A;  3EWO A;  4D86 A;  3KQZ A;  2FG1 A;  1LAN A;  2JZF A;  1HJZ A;  3JZT A;  5FSU A;  5D8N A;  3PEI A;  3EJF A;  4K3N A;  4KSI A;  4ZY2 A;  2JZE A;  4ZI6 A;  3GQO A;  3IIF A;  3Q6Z A;  3SIG A;  4GUA A;  5FSY A; 
#chains in the Genus database with same CATH homology
 3SIJ A;  1ZR5 A;  3EW5 A;  4GVV A;  5HOL A;  4ZYQ A;  1BLL E;  3KZW A;  5CMS A;  3EJG A;  3SII A;  1ZR3 A;  3H8F A;  1BPN A;  4J5Q A;  3VFQ A;  4ZX8 A;  4J5R A;  3H8G A;  3JRU A;  3KR5 A;  4R6T A;  1TY8 A;  3EWQ A;  1TXZ A;  2DX6 A;  2FAV A;  3GQE A;  3V45 A;  3IJ3 A;  4R76 A;  4JCA A;  3EWP A;  2LGR A;  1GYT A;  4R7M A;  3GPQ A;  3V2B A;  4IQY A;  5FSX A;  3IID A;  3T8W A;  3Q71 A;  1LCP A;  5CBM A;  4ETK A;  4JVV A;  3GPG A;  2J9A A;  2ACF A;  2VRI A;  2EEE A;  2BFQ A;  4ZY0 A;  4K0C A;  4X2T A;  1LAP A;  1NJR A;  2XD7 A;  3H8E A;  5CB3 A;  5DUS A;  4TU0 A;  4JGK A;  3GPO A;  3EWR A;  1SPV A;  3EKE A;  1YD9 A;  4J5S A;  4JLL A;  3SIH A;  2AFC A;  4ZX9 A;  4J4Z A;  5CB5 A;  2FXK A;  4ETJ A;  1LAM A;  4GVW A;  4ABL A;  2EWB A;  2X47 A;  4ABK A;  5E3B A;  1VHU A;  2L8R A;  5AIL A;  4ESS A;  4UML A;  3KQX A;  3ETI A;  2BFR A;  5FSV A;  5HIH A;  1BPM A;  3KR4 A;  4KYB A;  5FSZ A;  4ZY1 A;  3EWO A;  4D86 A;  3KQZ A;  2FG1 A;  1LAN A;  1HJZ A;  3JZT A;  5FSU A;  5D8N A;  3PEI A;  3EJF A;  4K3N A;  4KSI A;  4ZY2 A;  4ZI6 A;  3GQO A;  3IIF A;  3Q6Z A;  3SIG A;  4GUA A;  5FSY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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