4J5SA

Targ1 (c6orf130), terminal adp-ribose glycohydrolase 1 adp-ribose complex
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
146
structure length
146
Chain Sequence
GSHMGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords O-acetyl-ADP-ribose deacetylase 1
publication title Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.
pubmed doi rcsb
source organism Homo sapiens
total genus 52
structure length 146
sequence length 146
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.-:
pdb deposition date 2013-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4j5sA00
4K3NA 3H8FA 4GVVA 4ABLA 5DUSA 3EJFA 2J9AA 4KYBA 2BFRA 2X47A 4ZY1A 3SIHA 3H8GA 1LAMA 3EWOA 4TU0A 3T8WA 2VRIA 1TY8A 4R76A 1GYTA 2XD7A 4K0CA 5E3BA 4ZX9A 3KQZA 4J5QA 4GVWA 3JZTA 1HJZA 3KR4A 3SIIA 3KZWA 4R6TA 4ZYQA 3EW5A 4J4ZA 1LCPA 2L8RA 5FSYA 3GQEA 1BPMA 3Q71A 2EEEA 3KR5A 1LANA 2BFQA 5FSUA 5CB3A 4ETKA 1TXZA 3H8EA 4GUAA 2FXKA 3EKEA 3SIGA 1NJRA 4J5RA 4JCAA 3EWRA 4R7MA 3IIDA 5CBMA 5CB5A 4ZY2A 5D8NA 3PEIA 1LAPA 4JGKA 3SIJA 4JVVA 3GQOA 4ZX8A 3JRUA 4JLLA 3V45A 1YD9A 2EWBA 2ACFA 1BPNA 1ZR5A 4KSIA 3EJGA 3IIFA 4X2TA 5FSZA 1SPVA 5AILA 1VHUA 3Q6ZA 3GPOA 5HIHA 3GPGA 5FSXA 5FSVA 4IQYA 2FAVA 4ABKA 1BLLE 5CMSA 4D86A 5HOLA 4ETJA 3KQXA 4ZI6A 4ZY0A 2LGRA 3EWPA 2FG1A 4ESSA 1ZR3A 2AFCA 2DX6A 3ETIA 4J5SA 3IJ3A 4UMLA 3EWQA 3VFQA 3GPQA 3V2BA
chains in the Genus database with same CATH superfamily
4K3NA 3H8FA 4GVVA 4ABLA 5DUSA 3EJFA 2J9AA 4KYBA 2BFRA 2X47A 4ZY1A 3SIHA 3H8GA 1LAMA 3EWOA 4TU0A 3T8WA 2KQVA 2VRIA 2W2GA 1TY8A 4R76A 1GYTA 2XD7A 4K0CA 5E3BA 4ZX9A 3KQZA 4J5QA 4GVWA 3JZTA 1HJZA 3KR4A 3SIIA 3KZWA 4R6TA 4ZYQA 3EW5A 4J4ZA 1LCPA 2L8RA 5FSYA 3GQEA 1BPMA 3Q71A 2EEEA 2RNKA 3KR5A 1LANA 2BFQA 5FSUA 5CB3A 4ETKA 1TXZA 3H8EA 4GUAA 2FXKA 3EKEA 3SIGA 1NJRA 4J5RA 4JCAA 3EWRA 4R7MA 3GPQA 3IIDA 5CBMA 5CB5A 4ZY2A 5D8NA 3PEIA 1LAPA 4JGKA 3SIJA 4JVVA 3GQOA 4ZX8A 3JRUA 4JLLA 3V45A 1YD9A 2EWBA 2ACFA 1BPNA 1ZR5A 4KSIA 2JZFA 3EJGA 3IIFA 4X2TA 2JZDA 5FSZA 1SPVA 5AILA 1VHUA 3Q6ZA 3GPOA 5HIHA 3GPGA 5FSXA 5FSVA 4IQYA 2FAVA 4ABKA 1BLLE 5CMSA 4D86A 5HOLA 4ETJA 3KQXA 4ZI6A 4ZY0A 2LGRA 3EWPA 2FG1A 4ESSA 1ZR3A 2AFCA 2DX6A 3ETIA 4J5SA 3IJ3A 4UMLA 3EWQA 2JZEA 3VFQA 2WCTA 3V2BA
chains in the Genus database with same CATH topology
4K3NA 3H8FA 4GVVA 4ABLA 5DUSA 3EJFA 2J9AA 4KYBA 2BFRA 2X47A 4ZY1A 3SIHA 3H8GA 1LAMA 3EWOA 4TU0A 3T8WA 2VRIA 1TY8A 4R76A 1GYTA 2XD7A 4K0CA 5E3BA 4ZX9A 3KQZA 4J5QA 4GVWA 3JZTA 1HJZA 3KR4A 3SIIA 3KZWA 4R6TA 4ZYQA 3EW5A 4J4ZA 1LCPA 2L8RA 5FSYA 3GQEA 1BPMA 3Q71A 2EEEA 3KR5A 1LANA 2BFQA 5FSUA 5CB3A 4ETKA 1TXZA 3H8EA 4GUAA 2FXKA 3EKEA 3SIGA 1NJRA 4J5RA 4JCAA 3EWRA 4R7MA 3IIDA 5CBMA 5CB5A 4ZY2A 5D8NA 3PEIA 1LAPA 4JGKA 3SIJA 4JVVA 3GQOA 4ZX8A 3JRUA 4JLLA 3V45A 1YD9A 2EWBA 2ACFA 1BPNA 1ZR5A 4KSIA 3EJGA 3IIFA 4X2TA 5FSZA 1SPVA 5AILA 1VHUA 3Q6ZA 3GPOA 5HIHA 3GPGA 5FSXA 5FSVA 4IQYA 2FAVA 4ABKA 1BLLE 5CMSA 4D86A 5HOLA 4ETJA 3KQXA 4ZI6A 4ZY0A 2LGRA 3EWPA 2FG1A 4ESSA 1ZR3A 2AFCA 2DX6A 3ETIA 4J5SA 3IJ3A 4UMLA 3EWQA 3VFQA 3GPQA 3V2BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K3N A;  3H8F A;  4GVV A;  4ABL A;  5DUS A;  3EJF A;  2J9A A;  4KYB A;  2BFR A;  2X47 A;  4ZY1 A;  3SIH A;  3H8G A;  1LAM A;  3EWO A;  4TU0 A;  3T8W A;  2VRI A;  1TY8 A;  4R76 A;  1GYT A;  2XD7 A;  4K0C A;  5E3B A;  4ZX9 A;  3KQZ A;  4J5Q A;  4GVW A;  3JZT A;  1HJZ A;  3KR4 A;  3SII A;  3KZW A;  4R6T A;  4ZYQ A;  3EW5 A;  4J4Z A;  1LCP A;  2L8R A;  5FSY A;  3GQE A;  1BPM A;  3Q71 A;  2EEE A;  3KR5 A;  1LAN A;  2BFQ A;  5FSU A;  5CB3 A;  4ETK A;  1TXZ A;  3H8E A;  4GUA A;  2FXK A;  3EKE A;  3SIG A;  1NJR A;  4J5R A;  4JCA A;  3EWR A;  4R7M A;  3IID A;  5CBM A;  5CB5 A;  4ZY2 A;  5D8N A;  3PEI A;  1LAP A;  4JGK A;  3SIJ A;  4JVV A;  3GQO A;  4ZX8 A;  3JRU A;  4JLL A;  3V45 A;  1YD9 A;  2EWB A;  2ACF A;  1BPN A;  1ZR5 A;  4KSI A;  3EJG A;  3IIF A;  4X2T A;  5FSZ A;  1SPV A;  5AIL A;  1VHU A;  3Q6Z A;  3GPO A;  5HIH A;  3GPG A;  5FSX A;  5FSV A;  4IQY A;  2FAV A;  4ABK A;  1BLL E;  5CMS A;  4D86 A;  5HOL A;  4ETJ A;  3KQX A;  4ZI6 A;  4ZY0 A;  2LGR A;  3EWP A;  2FG1 A;  4ESS A;  1ZR3 A;  2AFC A;  2DX6 A;  3ETI A;  4J5S A;  3IJ3 A;  4UML A;  3EWQ A;  3VFQ A;  3GPQ A;  3V2B A; 
#chains in the Genus database with same CATH topology
 4K3N A;  3H8F A;  4GVV A;  4ABL A;  5DUS A;  3EJF A;  2J9A A;  4KYB A;  2BFR A;  2X47 A;  4ZY1 A;  3SIH A;  3H8G A;  1LAM A;  3EWO A;  4TU0 A;  3T8W A;  2KQV A;  2VRI A;  2W2G A;  1TY8 A;  4R76 A;  1GYT A;  2XD7 A;  4K0C A;  5E3B A;  4ZX9 A;  3KQZ A;  4J5Q A;  4GVW A;  3JZT A;  1HJZ A;  3KR4 A;  3SII A;  3KZW A;  4R6T A;  4ZYQ A;  3EW5 A;  4J4Z A;  1LCP A;  2L8R A;  5FSY A;  3GQE A;  1BPM A;  3Q71 A;  2EEE A;  2RNK A;  3KR5 A;  1LAN A;  2BFQ A;  5FSU A;  5CB3 A;  4ETK A;  1TXZ A;  3H8E A;  4GUA A;  2FXK A;  3EKE A;  3SIG A;  1NJR A;  4J5R A;  4JCA A;  3EWR A;  4R7M A;  3GPQ A;  3IID A;  5CBM A;  5CB5 A;  4ZY2 A;  5D8N A;  3PEI A;  1LAP A;  4JGK A;  3SIJ A;  4JVV A;  3GQO A;  4ZX8 A;  3JRU A;  4JLL A;  3V45 A;  1YD9 A;  2EWB A;  2ACF A;  1BPN A;  1ZR5 A;  4KSI A;  2JZF A;  3EJG A;  3IIF A;  4X2T A;  2JZD A;  5FSZ A;  1SPV A;  5AIL A;  1VHU A;  3Q6Z A;  3GPO A;  5HIH A;  3GPG A;  5FSX A;  5FSV A;  4IQY A;  2FAV A;  4ABK A;  1BLL E;  5CMS A;  4D86 A;  5HOL A;  4ETJ A;  3KQX A;  4ZI6 A;  4ZY0 A;  2LGR A;  3EWP A;  2FG1 A;  4ESS A;  1ZR3 A;  2AFC A;  2DX6 A;  3ETI A;  4J5S A;  3IJ3 A;  4UML A;  3EWQ A;  2JZE A;  3VFQ A;  2WCT A;  3V2B A; 
#chains in the Genus database with same CATH homology
 4K3N A;  3H8F A;  4GVV A;  4ABL A;  5DUS A;  3EJF A;  2J9A A;  4KYB A;  2BFR A;  2X47 A;  4ZY1 A;  3SIH A;  3H8G A;  1LAM A;  3EWO A;  4TU0 A;  3T8W A;  2VRI A;  1TY8 A;  4R76 A;  1GYT A;  2XD7 A;  4K0C A;  5E3B A;  4ZX9 A;  3KQZ A;  4J5Q A;  4GVW A;  3JZT A;  1HJZ A;  3KR4 A;  3SII A;  3KZW A;  4R6T A;  4ZYQ A;  3EW5 A;  4J4Z A;  1LCP A;  2L8R A;  5FSY A;  3GQE A;  1BPM A;  3Q71 A;  2EEE A;  3KR5 A;  1LAN A;  2BFQ A;  5FSU A;  5CB3 A;  4ETK A;  1TXZ A;  3H8E A;  4GUA A;  2FXK A;  3EKE A;  3SIG A;  1NJR A;  4J5R A;  4JCA A;  3EWR A;  4R7M A;  3IID A;  5CBM A;  5CB5 A;  4ZY2 A;  5D8N A;  3PEI A;  1LAP A;  4JGK A;  3SIJ A;  4JVV A;  3GQO A;  4ZX8 A;  3JRU A;  4JLL A;  3V45 A;  1YD9 A;  2EWB A;  2ACF A;  1BPN A;  1ZR5 A;  4KSI A;  3EJG A;  3IIF A;  4X2T A;  5FSZ A;  1SPV A;  5AIL A;  1VHU A;  3Q6Z A;  3GPO A;  5HIH A;  3GPG A;  5FSX A;  5FSV A;  4IQY A;  2FAV A;  4ABK A;  1BLL E;  5CMS A;  4D86 A;  5HOL A;  4ETJ A;  3KQX A;  4ZI6 A;  4ZY0 A;  2LGR A;  3EWP A;  2FG1 A;  4ESS A;  1ZR3 A;  2AFC A;  2DX6 A;  3ETI A;  4J5S A;  3IJ3 A;  4UML A;  3EWQ A;  3VFQ A;  3GPQ A;  3V2B A; 
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similar chains in the Genus database (?% sequence similarity)
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