4J5SA

Targ1 (c6orf130), terminal adp-ribose glycohydrolase 1 adp-ribose complex
Total Genus 52
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
146
structure length
146
Chain Sequence
GSHMGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords O-acetyl-ADP-ribose deacetylase 1
publication title Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Hydrolase
total genus 52
structure length 146
sequence length 146
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.-:
pdb deposition date 2013-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4j5sA00
5HIHA 3EW5A 3EWQA 4IQYA 4ZI6A 1NJRA 5CBMA 2VRIA 5HOLA 2DX6A 3H8EA 3GPOA 2XD7A 4K0CA 1BPNA 1BLLE 2J9AA 2FAVA 3IJ3A 4GVVA 4ZX9A 4J5SA 1VHUA 4KSIA 2FXKA 4GUAA 5CMSA 4ESSA 4JGKA 2L8RA 1LANA 3KQZA 1LCPA 5CB5A 5FSYA 3IIDA 3SIIA 3T8WA 3Q71A 4R76A 2BFRA 3SIJA 2LGRA 5FSVA 3KQXA 3EJGA 4JVVA 4ZYQA 4D86A 3H8GA 4R6TA 3GQOA 2AFCA 5FSUA 3EWRA 3VFQA 1ZR3A 1BPMA 4GVWA 5D8NA 4ZY0A 2EEEA 3ETIA 3GPQA 3SIHA 3V45A 5CB3A 4ZY1A 1SPVA 5FSZA 1ZR5A 4ZY2A 4J4ZA 1TY8A 4X2TA 5AILA 1YD9A 4JCAA 4ABKA 3GQEA 2FG1A 3SIGA 1TXZA 3EKEA 5FSXA 4JLLA 1LAMA 4KYBA 4ETKA 3GPGA 1HJZA 3EWPA 3KR5A 5E3BA 2X47A 1GYTA 3KR4A 2ACFA 4UMLA 4TU0A 4ABLA 1LAPA 2BFQA 3KZWA 4J5QA 4ZX8A 3V2BA 3H8FA 3JRUA 4K3NA 4J5RA 3PEIA 4R7MA 3EJFA 4ETJA 3EWOA 3JZTA 5DUSA 3Q6ZA 3IIFA 2EWBA
chains in the Genus database with same CATH superfamily
5HIHA 3EW5A 3EWQA 4IQYA 4ZI6A 1NJRA 5CBMA 2VRIA 5HOLA 2DX6A 2KQVA 3H8EA 3GPOA 2XD7A 4K0CA 1BPNA 1BLLE 2J9AA 2FAVA 3IJ3A 4GVVA 4ZX9A 4J5SA 1VHUA 4KSIA 2FXKA 4GUAA 5CMSA 4ESSA 4JGKA 2JZDA 2L8RA 1LANA 3KQZA 2JZFA 1LCPA 5CB5A 5FSYA 3IIDA 3SIIA 3T8WA 3Q71A 4R76A 2BFRA 3SIJA 2LGRA 5FSVA 3KQXA 3EJGA 4JVVA 4ZYQA 4D86A 3H8GA 4R6TA 3GQOA 2AFCA 5FSUA 3EWRA 3VFQA 1ZR3A 2JZEA 1BPMA 4GVWA 5D8NA 4ZY0A 2EEEA 3ETIA 3GPQA 3SIHA 3V45A 5CB3A 4ZY1A 1SPVA 5FSZA 1ZR5A 4ZY2A 4J4ZA 1TY8A 4X2TA 5AILA 1YD9A 4JCAA 4ABKA 3GQEA 2FG1A 3SIGA 2W2GA 1TXZA 3EKEA 5FSXA 4JLLA 1LAMA 4KYBA 4ETKA 3GPGA 1HJZA 3EWPA 3KR5A 5E3BA 2WCTA 2X47A 1GYTA 3KR4A 2ACFA 4UMLA 4TU0A 4ABLA 1LAPA 2BFQA 3KZWA 4J5QA 4ZX8A 3V2BA 3H8FA 3JRUA 4K3NA 4J5RA 3PEIA 2RNKA 4R7MA 3EJFA 4ETJA 3EWOA 3JZTA 5DUSA 3Q6ZA 3IIFA 2EWBA
chains in the Genus database with same CATH topology
5HIHA 3EW5A 3EWQA 4IQYA 4ZI6A 1NJRA 5CBMA 2VRIA 5HOLA 2DX6A 3H8EA 3GPOA 2XD7A 4K0CA 1BPNA 1BLLE 2J9AA 2FAVA 3IJ3A 4GVVA 4ZX9A 4J5SA 1VHUA 4KSIA 2FXKA 4GUAA 5CMSA 4ESSA 4JGKA 2L8RA 1LANA 3KQZA 1LCPA 5CB5A 5FSYA 3IIDA 3SIIA 3T8WA 3Q71A 4R76A 2BFRA 3SIJA 2LGRA 5FSVA 3KQXA 3EJGA 4JVVA 4ZYQA 4D86A 3H8GA 4R6TA 3GQOA 2AFCA 5FSUA 3EWRA 3VFQA 1ZR3A 1BPMA 4GVWA 5D8NA 4ZY0A 2EEEA 3ETIA 3GPQA 3SIHA 3V45A 5CB3A 4ZY1A 1SPVA 5FSZA 1ZR5A 4ZY2A 4J4ZA 1TY8A 4X2TA 5AILA 1YD9A 4JCAA 4ABKA 3GQEA 2FG1A 3SIGA 1TXZA 3EKEA 5FSXA 4JLLA 1LAMA 4KYBA 4ETKA 3GPGA 1HJZA 3EWPA 3KR5A 5E3BA 2X47A 1GYTA 3KR4A 2ACFA 4UMLA 4TU0A 4ABLA 1LAPA 2BFQA 3KZWA 4J5QA 4ZX8A 3V2BA 3H8FA 3JRUA 4K3NA 4J5RA 3PEIA 4R7MA 3EJFA 4ETJA 3EWOA 3JZTA 5DUSA 3Q6ZA 3IIFA 2EWBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HIH A;  3EW5 A;  3EWQ A;  4IQY A;  4ZI6 A;  1NJR A;  5CBM A;  2VRI A;  5HOL A;  2DX6 A;  3H8E A;  3GPO A;  2XD7 A;  4K0C A;  1BPN A;  1BLL E;  2J9A A;  2FAV A;  3IJ3 A;  4GVV A;  4ZX9 A;  4J5S A;  1VHU A;  4KSI A;  2FXK A;  4GUA A;  5CMS A;  4ESS A;  4JGK A;  2L8R A;  1LAN A;  3KQZ A;  1LCP A;  5CB5 A;  5FSY A;  3IID A;  3SII A;  3T8W A;  3Q71 A;  4R76 A;  2BFR A;  3SIJ A;  2LGR A;  5FSV A;  3KQX A;  3EJG A;  4JVV A;  4ZYQ A;  4D86 A;  3H8G A;  4R6T A;  3GQO A;  2AFC A;  5FSU A;  3EWR A;  3VFQ A;  1ZR3 A;  1BPM A;  4GVW A;  5D8N A;  4ZY0 A;  2EEE A;  3ETI A;  3GPQ A;  3SIH A;  3V45 A;  5CB3 A;  4ZY1 A;  1SPV A;  5FSZ A;  1ZR5 A;  4ZY2 A;  4J4Z A;  1TY8 A;  4X2T A;  5AIL A;  1YD9 A;  4JCA A;  4ABK A;  3GQE A;  2FG1 A;  3SIG A;  1TXZ A;  3EKE A;  5FSX A;  4JLL A;  1LAM A;  4KYB A;  4ETK A;  3GPG A;  1HJZ A;  3EWP A;  3KR5 A;  5E3B A;  2X47 A;  1GYT A;  3KR4 A;  2ACF A;  4UML A;  4TU0 A;  4ABL A;  1LAP A;  2BFQ A;  3KZW A;  4J5Q A;  4ZX8 A;  3V2B A;  3H8F A;  3JRU A;  4K3N A;  4J5R A;  3PEI A;  4R7M A;  3EJF A;  4ETJ A;  3EWO A;  3JZT A;  5DUS A;  3Q6Z A;  3IIF A;  2EWB A; 
#chains in the Genus database with same CATH topology
 5HIH A;  3EW5 A;  3EWQ A;  4IQY A;  4ZI6 A;  1NJR A;  5CBM A;  2VRI A;  5HOL A;  2DX6 A;  2KQV A;  3H8E A;  3GPO A;  2XD7 A;  4K0C A;  1BPN A;  1BLL E;  2J9A A;  2FAV A;  3IJ3 A;  4GVV A;  4ZX9 A;  4J5S A;  1VHU A;  4KSI A;  2FXK A;  4GUA A;  5CMS A;  4ESS A;  4JGK A;  2JZD A;  2L8R A;  1LAN A;  3KQZ A;  2JZF A;  1LCP A;  5CB5 A;  5FSY A;  3IID A;  3SII A;  3T8W A;  3Q71 A;  4R76 A;  2BFR A;  3SIJ A;  2LGR A;  5FSV A;  3KQX A;  3EJG A;  4JVV A;  4ZYQ A;  4D86 A;  3H8G A;  4R6T A;  3GQO A;  2AFC A;  5FSU A;  3EWR A;  3VFQ A;  1ZR3 A;  2JZE A;  1BPM A;  4GVW A;  5D8N A;  4ZY0 A;  2EEE A;  3ETI A;  3GPQ A;  3SIH A;  3V45 A;  5CB3 A;  4ZY1 A;  1SPV A;  5FSZ A;  1ZR5 A;  4ZY2 A;  4J4Z A;  1TY8 A;  4X2T A;  5AIL A;  1YD9 A;  4JCA A;  4ABK A;  3GQE A;  2FG1 A;  3SIG A;  2W2G A;  1TXZ A;  3EKE A;  5FSX A;  4JLL A;  1LAM A;  4KYB A;  4ETK A;  3GPG A;  1HJZ A;  3EWP A;  3KR5 A;  5E3B A;  2WCT A;  2X47 A;  1GYT A;  3KR4 A;  2ACF A;  4UML A;  4TU0 A;  4ABL A;  1LAP A;  2BFQ A;  3KZW A;  4J5Q A;  4ZX8 A;  3V2B A;  3H8F A;  3JRU A;  4K3N A;  4J5R A;  3PEI A;  2RNK A;  4R7M A;  3EJF A;  4ETJ A;  3EWO A;  3JZT A;  5DUS A;  3Q6Z A;  3IIF A;  2EWB A; 
#chains in the Genus database with same CATH homology
 5HIH A;  3EW5 A;  3EWQ A;  4IQY A;  4ZI6 A;  1NJR A;  5CBM A;  2VRI A;  5HOL A;  2DX6 A;  3H8E A;  3GPO A;  2XD7 A;  4K0C A;  1BPN A;  1BLL E;  2J9A A;  2FAV A;  3IJ3 A;  4GVV A;  4ZX9 A;  4J5S A;  1VHU A;  4KSI A;  2FXK A;  4GUA A;  5CMS A;  4ESS A;  4JGK A;  2L8R A;  1LAN A;  3KQZ A;  1LCP A;  5CB5 A;  5FSY A;  3IID A;  3SII A;  3T8W A;  3Q71 A;  4R76 A;  2BFR A;  3SIJ A;  2LGR A;  5FSV A;  3KQX A;  3EJG A;  4JVV A;  4ZYQ A;  4D86 A;  3H8G A;  4R6T A;  3GQO A;  2AFC A;  5FSU A;  3EWR A;  3VFQ A;  1ZR3 A;  1BPM A;  4GVW A;  5D8N A;  4ZY0 A;  2EEE A;  3ETI A;  3GPQ A;  3SIH A;  3V45 A;  5CB3 A;  4ZY1 A;  1SPV A;  5FSZ A;  1ZR5 A;  4ZY2 A;  4J4Z A;  1TY8 A;  4X2T A;  5AIL A;  1YD9 A;  4JCA A;  4ABK A;  3GQE A;  2FG1 A;  3SIG A;  1TXZ A;  3EKE A;  5FSX A;  4JLL A;  1LAM A;  4KYB A;  4ETK A;  3GPG A;  1HJZ A;  3EWP A;  3KR5 A;  5E3B A;  2X47 A;  1GYT A;  3KR4 A;  2ACF A;  4UML A;  4TU0 A;  4ABL A;  1LAP A;  2BFQ A;  3KZW A;  4J5Q A;  4ZX8 A;  3V2B A;  3H8F A;  3JRU A;  4K3N A;  4J5R A;  3PEI A;  4R7M A;  3EJF A;  4ETJ A;  3EWO A;  3JZT A;  5DUS A;  3Q6Z A;  3IIF A;  2EWB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...