4J5SA

Targ1 (c6orf130), terminal adp-ribose glycohydrolase 1 adp-ribose complex
Total Genus 52
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
146
structure length
146
Chain Sequence
GSHMGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Homo sapiens
publication title Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.
pubmed doi rcsb
molecule keywords O-acetyl-ADP-ribose deacetylase 1
total genus 52
structure length 146
sequence length 146
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.-:
pdb deposition date 2013-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4j5sA00
3T8WA 3EWRA 3KQXA 3SIHA 4KSIA 2FG1A 3ETIA 3JRUA 2DX6A 4ETKA 2FXKA 3EJFA 4UMLA 1SPVA 2EEEA 4JCAA 3EKEA 5HIHA 1BPNA 1NJRA 1TXZA 4D86A 5CB5A 3EW5A 3GPQA 4ZY1A 4J5RA 2ACFA 2L8RA 1ZR3A 5FSVA 4R7MA 5E3BA 3H8GA 1TY8A 4GUAA 4X2TA 4ZY2A 3GQEA 5CBMA 3KZWA 3KQZA 3V2BA 2EWBA 3Q71A 4J4ZA 3GPOA 1HJZA 3H8EA 4K3NA 3EWPA 5DUSA 1GYTA 4ETJA 2X47A 4KYBA 3IJ3A 4JVVA 5FSXA 2LGRA 4GVVA 2XD7A 2FAVA 3SIIA 1LAPA 1YD9A 4ABLA 4R6TA 4TU0A 4ABKA 1LANA 4JLLA 4ZY0A 3IIDA 3GQOA 3H8FA 3SIGA 4GVWA 4ZX8A 4R76A 3GPGA 4K0CA 4ZX9A 5AILA 1ZR5A 1BPMA 2BFQA 1VHUA 1BLLE 2J9AA 3KR5A 3Q6ZA 3EJGA 2VRIA 4J5SA 3KR4A 3SIJA 5CB3A 3EWOA 1LAMA 4IQYA 2BFRA 1LCPA 3EWQA 4ZYQA 3PEIA 3V45A 5D8NA 2AFCA 4J5QA 5FSZA 5CMSA 3IIFA 3JZTA 4ZI6A 5FSUA 5HOLA 5FSYA 4JGKA 3VFQA 4ESSA
chains in the Genus database with same CATH superfamily
3T8WA 3EWRA 3KQXA 3SIHA 4KSIA 2FG1A 3ETIA 3JRUA 2DX6A 2JZFA 2FXKA 3EJFA 4UMLA 4ETKA 1SPVA 2EEEA 4JCAA 2JZDA 3EKEA 5HIHA 1BPNA 1NJRA 1TXZA 4D86A 5CB5A 3EW5A 3GPQA 4ZY1A 4J5RA 2ACFA 2L8RA 1ZR3A 5FSVA 4R7MA 5E3BA 3H8GA 1TY8A 4GUAA 4X2TA 4ZY2A 3GQEA 5CBMA 3KZWA 3KQZA 3V2BA 2EWBA 3Q71A 4J4ZA 3GPOA 1HJZA 3H8EA 4K3NA 3EWPA 5DUSA 1GYTA 2KQVA 4ETJA 2X47A 4KYBA 3IJ3A 4JVVA 5FSXA 2LGRA 4GVVA 2XD7A 2FAVA 3SIIA 1LAPA 1YD9A 4ABLA 4R6TA 4TU0A 4ABKA 1LANA 4JLLA 4ZY0A 3IIDA 3GQOA 3H8FA 3SIGA 4GVWA 4ZX8A 2W2GA 4R76A 3GPGA 4K0CA 4ZX9A 5AILA 1ZR5A 1BPMA 2BFQA 1VHUA 1BLLE 2J9AA 3KR5A 3Q6ZA 3EJGA 2VRIA 4J5SA 2WCTA 3KR4A 3SIJA 2JZEA 5CB3A 3EWOA 1LAMA 4IQYA 2BFRA 2RNKA 1LCPA 3EWQA 4ZYQA 3PEIA 3V45A 5D8NA 2AFCA 4J5QA 5FSZA 5CMSA 3IIFA 3JZTA 4ZI6A 5FSUA 5HOLA 5FSYA 4JGKA 3VFQA 4ESSA
chains in the Genus database with same CATH topology
3T8WA 3EWRA 3KQXA 3SIHA 4KSIA 2FG1A 3ETIA 3JRUA 2DX6A 4ETKA 2FXKA 3EJFA 4UMLA 1SPVA 2EEEA 4JCAA 3EKEA 5HIHA 1BPNA 1NJRA 1TXZA 4D86A 5CB5A 3EW5A 3GPQA 4ZY1A 4J5RA 2ACFA 2L8RA 1ZR3A 5FSVA 4R7MA 5E3BA 3H8GA 1TY8A 4GUAA 4X2TA 4ZY2A 3GQEA 5CBMA 3KZWA 3KQZA 3V2BA 2EWBA 3Q71A 4J4ZA 3GPOA 1HJZA 3H8EA 4K3NA 3EWPA 5DUSA 1GYTA 4ETJA 2X47A 4KYBA 3IJ3A 4JVVA 5FSXA 2LGRA 4GVVA 2XD7A 2FAVA 3SIIA 1LAPA 1YD9A 4ABLA 4R6TA 4TU0A 4ABKA 1LANA 4JLLA 4ZY0A 3IIDA 3GQOA 3H8FA 3SIGA 4GVWA 4ZX8A 4R76A 3GPGA 4K0CA 4ZX9A 5AILA 1ZR5A 1BPMA 2BFQA 1VHUA 1BLLE 2J9AA 3KR5A 3Q6ZA 3EJGA 2VRIA 4J5SA 3KR4A 3SIJA 5CB3A 3EWOA 1LAMA 4IQYA 2BFRA 1LCPA 3EWQA 4ZYQA 3PEIA 3V45A 5D8NA 2AFCA 4J5QA 5FSZA 5CMSA 3IIFA 3JZTA 4ZI6A 5FSUA 5HOLA 5FSYA 4JGKA 3VFQA 4ESSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T8W A;  3EWR A;  3KQX A;  3SIH A;  4KSI A;  2FG1 A;  3ETI A;  3JRU A;  2DX6 A;  4ETK A;  2FXK A;  3EJF A;  4UML A;  1SPV A;  2EEE A;  4JCA A;  3EKE A;  5HIH A;  1BPN A;  1NJR A;  1TXZ A;  4D86 A;  5CB5 A;  3EW5 A;  3GPQ A;  4ZY1 A;  4J5R A;  2ACF A;  2L8R A;  1ZR3 A;  5FSV A;  4R7M A;  5E3B A;  3H8G A;  1TY8 A;  4GUA A;  4X2T A;  4ZY2 A;  3GQE A;  5CBM A;  3KZW A;  3KQZ A;  3V2B A;  2EWB A;  3Q71 A;  4J4Z A;  3GPO A;  1HJZ A;  3H8E A;  4K3N A;  3EWP A;  5DUS A;  1GYT A;  4ETJ A;  2X47 A;  4KYB A;  3IJ3 A;  4JVV A;  5FSX A;  2LGR A;  4GVV A;  2XD7 A;  2FAV A;  3SII A;  1LAP A;  1YD9 A;  4ABL A;  4R6T A;  4TU0 A;  4ABK A;  1LAN A;  4JLL A;  4ZY0 A;  3IID A;  3GQO A;  3H8F A;  3SIG A;  4GVW A;  4ZX8 A;  4R76 A;  3GPG A;  4K0C A;  4ZX9 A;  5AIL A;  1ZR5 A;  1BPM A;  2BFQ A;  1VHU A;  1BLL E;  2J9A A;  3KR5 A;  3Q6Z A;  3EJG A;  2VRI A;  4J5S A;  3KR4 A;  3SIJ A;  5CB3 A;  3EWO A;  1LAM A;  4IQY A;  2BFR A;  1LCP A;  3EWQ A;  4ZYQ A;  3PEI A;  3V45 A;  5D8N A;  2AFC A;  4J5Q A;  5FSZ A;  5CMS A;  3IIF A;  3JZT A;  4ZI6 A;  5FSU A;  5HOL A;  5FSY A;  4JGK A;  3VFQ A;  4ESS A; 
#chains in the Genus database with same CATH topology
 3T8W A;  3EWR A;  3KQX A;  3SIH A;  4KSI A;  2FG1 A;  3ETI A;  3JRU A;  2DX6 A;  2JZF A;  2FXK A;  3EJF A;  4UML A;  4ETK A;  1SPV A;  2EEE A;  4JCA A;  2JZD A;  3EKE A;  5HIH A;  1BPN A;  1NJR A;  1TXZ A;  4D86 A;  5CB5 A;  3EW5 A;  3GPQ A;  4ZY1 A;  4J5R A;  2ACF A;  2L8R A;  1ZR3 A;  5FSV A;  4R7M A;  5E3B A;  3H8G A;  1TY8 A;  4GUA A;  4X2T A;  4ZY2 A;  3GQE A;  5CBM A;  3KZW A;  3KQZ A;  3V2B A;  2EWB A;  3Q71 A;  4J4Z A;  3GPO A;  1HJZ A;  3H8E A;  4K3N A;  3EWP A;  5DUS A;  1GYT A;  2KQV A;  4ETJ A;  2X47 A;  4KYB A;  3IJ3 A;  4JVV A;  5FSX A;  2LGR A;  4GVV A;  2XD7 A;  2FAV A;  3SII A;  1LAP A;  1YD9 A;  4ABL A;  4R6T A;  4TU0 A;  4ABK A;  1LAN A;  4JLL A;  4ZY0 A;  3IID A;  3GQO A;  3H8F A;  3SIG A;  4GVW A;  4ZX8 A;  2W2G A;  4R76 A;  3GPG A;  4K0C A;  4ZX9 A;  5AIL A;  1ZR5 A;  1BPM A;  2BFQ A;  1VHU A;  1BLL E;  2J9A A;  3KR5 A;  3Q6Z A;  3EJG A;  2VRI A;  4J5S A;  2WCT A;  3KR4 A;  3SIJ A;  2JZE A;  5CB3 A;  3EWO A;  1LAM A;  4IQY A;  2BFR A;  2RNK A;  1LCP A;  3EWQ A;  4ZYQ A;  3PEI A;  3V45 A;  5D8N A;  2AFC A;  4J5Q A;  5FSZ A;  5CMS A;  3IIF A;  3JZT A;  4ZI6 A;  5FSU A;  5HOL A;  5FSY A;  4JGK A;  3VFQ A;  4ESS A; 
#chains in the Genus database with same CATH homology
 3T8W A;  3EWR A;  3KQX A;  3SIH A;  4KSI A;  2FG1 A;  3ETI A;  3JRU A;  2DX6 A;  4ETK A;  2FXK A;  3EJF A;  4UML A;  1SPV A;  2EEE A;  4JCA A;  3EKE A;  5HIH A;  1BPN A;  1NJR A;  1TXZ A;  4D86 A;  5CB5 A;  3EW5 A;  3GPQ A;  4ZY1 A;  4J5R A;  2ACF A;  2L8R A;  1ZR3 A;  5FSV A;  4R7M A;  5E3B A;  3H8G A;  1TY8 A;  4GUA A;  4X2T A;  4ZY2 A;  3GQE A;  5CBM A;  3KZW A;  3KQZ A;  3V2B A;  2EWB A;  3Q71 A;  4J4Z A;  3GPO A;  1HJZ A;  3H8E A;  4K3N A;  3EWP A;  5DUS A;  1GYT A;  4ETJ A;  2X47 A;  4KYB A;  3IJ3 A;  4JVV A;  5FSX A;  2LGR A;  4GVV A;  2XD7 A;  2FAV A;  3SII A;  1LAP A;  1YD9 A;  4ABL A;  4R6T A;  4TU0 A;  4ABK A;  1LAN A;  4JLL A;  4ZY0 A;  3IID A;  3GQO A;  3H8F A;  3SIG A;  4GVW A;  4ZX8 A;  4R76 A;  3GPG A;  4K0C A;  4ZX9 A;  5AIL A;  1ZR5 A;  1BPM A;  2BFQ A;  1VHU A;  1BLL E;  2J9A A;  3KR5 A;  3Q6Z A;  3EJG A;  2VRI A;  4J5S A;  3KR4 A;  3SIJ A;  5CB3 A;  3EWO A;  1LAM A;  4IQY A;  2BFR A;  1LCP A;  3EWQ A;  4ZYQ A;  3PEI A;  3V45 A;  5D8N A;  2AFC A;  4J5Q A;  5FSZ A;  5CMS A;  3IIF A;  3JZT A;  4ZI6 A;  5FSU A;  5HOL A;  5FSY A;  4JGK A;  3VFQ A;  4ESS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...