2L8RA

Solution structure of human protein c6orf130 in complex with adp-ribose
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
150
structure length
150
Chain Sequence
SSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Uncharacterized protein C6orf130
publication title Orphan Macrodomain Protein (Human C6orf130) Is an O-Acyl-ADP-ribose Deacylase: SOLUTION STRUCTURE AND CATALYTIC PROPERTIES.
pubmed doi rcsb
source organism Homo sapiens
total genus 43
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2011-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 2l8rA01
5HIHA 2FXKA 3PEIA 4ZY0A 4K0CA 5CBMA 3EWQA 3EKEA 1YD9A 1ZR5A 2FG1A 3SIIA 5FSVA 4ZX9A 2AFCA 4ZYQA 2XD7A 1TY8A 4ZI6A 3SIJA 3SIGA 4K3NA 4ABKA 2DX6A 3IIDA 2ACFA 4D86A 3Q6ZA 3IJ3A 4J5RA 3IIFA 2LGRA 5FSUA 1VHUA 5DUSA 4JVVA 3SIHA 3T8WA 3V2BA 2VRIA 3KZWA 1GYTA 5E3BA 5CMSA 3EW5A 4GVVA 3GPGA 3GQOA 4JGKA 2BFRA 3EWPA 5D8NA 1BPNA 3V45A 4R7MA 4ZX8A 2J9AA 4ZY1A 3EJFA 4IQYA 3KR5A 3GQEA 3Q71A 4R76A 1LAPA 4KYBA 5AILA 2EEEA 5FSYA 3KR4A 5CB5A 5HOLA 3GPQA 4J5QA 3JRUA 2EWBA 3EWRA 4KSIA 3KQZA 2BFQA 4UMLA 3JZTA 4ZY2A 3EWOA 2X47A 5FSXA 5FSZA 1BLLE 2L8RA 1HJZA 3H8GA 4R6TA 4J5SA 4X2TA 1SPVA 1TXZA 3KQXA 3VFQA 4JCAA 1NJRA 5CB3A 4ABLA 3H8EA 1BPMA 4TU0A 4ETKA 1LCPA 3GPOA 4ETJA 4JLLA 2FAVA 3ETIA 3EJGA 4GVWA 1LANA 1LAMA 4ESSA 3H8FA 4GUAA 4J4ZA 1ZR3A
chains in the Genus database with same CATH superfamily
5HIHA 2FXKA 3PEIA 4ZY0A 4K0CA 5CBMA 3EWQA 3EKEA 1YD9A 1ZR5A 2FG1A 3SIIA 5FSVA 4ZX9A 2AFCA 4ZYQA 2XD7A 1TY8A 4ZI6A 3SIJA 3SIGA 4K3NA 4ABKA 2DX6A 3IIDA 2KQVA 2ACFA 4D86A 3Q6ZA 3IJ3A 4J5RA 3IIFA 2LGRA 5FSUA 1VHUA 5DUSA 4JVVA 3SIHA 3T8WA 2W2GA 3V2BA 2VRIA 3KZWA 2JZDA 1GYTA 5E3BA 5CMSA 3EW5A 4GVVA 3GPGA 3GQOA 2BFRA 2JZFA 3EWPA 4JGKA 5D8NA 1BPNA 3V45A 4R7MA 4ZX8A 2J9AA 4ZY1A 3EJFA 4IQYA 3KR5A 3GQEA 3Q71A 4R76A 1LAPA 4KYBA 5AILA 2EEEA 5FSYA 3KR4A 5CB5A 5HOLA 3GPQA 4J5QA 3JRUA 2EWBA 3EWRA 4KSIA 3KQZA 2BFQA 4UMLA 3JZTA 4ZY2A 3EWOA 2X47A 5FSXA 5FSZA 1BLLE 2L8RA 1HJZA 3H8GA 4R6TA 4J5SA 2WCTA 4X2TA 1SPVA 1TXZA 3KQXA 3VFQA 4JCAA 1NJRA 5CB3A 4ABLA 3H8EA 1BPMA 4TU0A 4ETKA 1LCPA 2JZEA 3GPOA 4ETJA 4JLLA 2FAVA 3ETIA 3EJGA 4GVWA 1LANA 1LAMA 2RNKA 4ESSA 3H8FA 4GUAA 4J4ZA 1ZR3A
chains in the Genus database with same CATH topology
5HIHA 2FXKA 3PEIA 4ZY0A 4K0CA 5CBMA 3EWQA 3EKEA 1YD9A 1ZR5A 2FG1A 3SIIA 5FSVA 4ZX9A 2AFCA 4ZYQA 2XD7A 1TY8A 4ZI6A 3SIJA 3SIGA 4K3NA 4ABKA 2DX6A 3IIDA 2ACFA 4D86A 3Q6ZA 3IJ3A 4J5RA 3IIFA 2LGRA 5FSUA 1VHUA 5DUSA 4JVVA 3SIHA 3T8WA 3V2BA 2VRIA 3KZWA 1GYTA 5E3BA 5CMSA 3EW5A 4GVVA 3GPGA 3GQOA 4JGKA 2BFRA 3EWPA 5D8NA 1BPNA 3V45A 4R7MA 4ZX8A 2J9AA 4ZY1A 3EJFA 4IQYA 3KR5A 3GQEA 3Q71A 4R76A 1LAPA 4KYBA 5AILA 2EEEA 5FSYA 3KR4A 5CB5A 5HOLA 3GPQA 4J5QA 3JRUA 2EWBA 3EWRA 4KSIA 3KQZA 2BFQA 4UMLA 3JZTA 4ZY2A 3EWOA 2X47A 5FSXA 5FSZA 1BLLE 2L8RA 1HJZA 3H8GA 4R6TA 4J5SA 4X2TA 1SPVA 1TXZA 3KQXA 3VFQA 4JCAA 1NJRA 5CB3A 4ABLA 3H8EA 1BPMA 4TU0A 4ETKA 1LCPA 3GPOA 4ETJA 4JLLA 2FAVA 3ETIA 3EJGA 4GVWA 1LANA 1LAMA 4ESSA 3H8FA 4GUAA 4J4ZA 1ZR3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HIH A;  2FXK A;  3PEI A;  4ZY0 A;  4K0C A;  5CBM A;  3EWQ A;  3EKE A;  1YD9 A;  1ZR5 A;  2FG1 A;  3SII A;  5FSV A;  4ZX9 A;  2AFC A;  4ZYQ A;  2XD7 A;  1TY8 A;  4ZI6 A;  3SIJ A;  3SIG A;  4K3N A;  4ABK A;  2DX6 A;  3IID A;  2ACF A;  4D86 A;  3Q6Z A;  3IJ3 A;  4J5R A;  3IIF A;  2LGR A;  5FSU A;  1VHU A;  5DUS A;  4JVV A;  3SIH A;  3T8W A;  3V2B A;  2VRI A;  3KZW A;  1GYT A;  5E3B A;  5CMS A;  3EW5 A;  4GVV A;  3GPG A;  3GQO A;  4JGK A;  2BFR A;  3EWP A;  5D8N A;  1BPN A;  3V45 A;  4R7M A;  4ZX8 A;  2J9A A;  4ZY1 A;  3EJF A;  4IQY A;  3KR5 A;  3GQE A;  3Q71 A;  4R76 A;  1LAP A;  4KYB A;  5AIL A;  2EEE A;  5FSY A;  3KR4 A;  5CB5 A;  5HOL A;  3GPQ A;  4J5Q A;  3JRU A;  2EWB A;  3EWR A;  4KSI A;  3KQZ A;  2BFQ A;  4UML A;  3JZT A;  4ZY2 A;  3EWO A;  2X47 A;  5FSX A;  5FSZ A;  1BLL E;  2L8R A;  1HJZ A;  3H8G A;  4R6T A;  4J5S A;  4X2T A;  1SPV A;  1TXZ A;  3KQX A;  3VFQ A;  4JCA A;  1NJR A;  5CB3 A;  4ABL A;  3H8E A;  1BPM A;  4TU0 A;  4ETK A;  1LCP A;  3GPO A;  4ETJ A;  4JLL A;  2FAV A;  3ETI A;  3EJG A;  4GVW A;  1LAN A;  1LAM A;  4ESS A;  3H8F A;  4GUA A;  4J4Z A;  1ZR3 A; 
#chains in the Genus database with same CATH topology
 5HIH A;  2FXK A;  3PEI A;  4ZY0 A;  4K0C A;  5CBM A;  3EWQ A;  3EKE A;  1YD9 A;  1ZR5 A;  2FG1 A;  3SII A;  5FSV A;  4ZX9 A;  2AFC A;  4ZYQ A;  2XD7 A;  1TY8 A;  4ZI6 A;  3SIJ A;  3SIG A;  4K3N A;  4ABK A;  2DX6 A;  3IID A;  2KQV A;  2ACF A;  4D86 A;  3Q6Z A;  3IJ3 A;  4J5R A;  3IIF A;  2LGR A;  5FSU A;  1VHU A;  5DUS A;  4JVV A;  3SIH A;  3T8W A;  2W2G A;  3V2B A;  2VRI A;  3KZW A;  2JZD A;  1GYT A;  5E3B A;  5CMS A;  3EW5 A;  4GVV A;  3GPG A;  3GQO A;  2BFR A;  2JZF A;  3EWP A;  4JGK A;  5D8N A;  1BPN A;  3V45 A;  4R7M A;  4ZX8 A;  2J9A A;  4ZY1 A;  3EJF A;  4IQY A;  3KR5 A;  3GQE A;  3Q71 A;  4R76 A;  1LAP A;  4KYB A;  5AIL A;  2EEE A;  5FSY A;  3KR4 A;  5CB5 A;  5HOL A;  3GPQ A;  4J5Q A;  3JRU A;  2EWB A;  3EWR A;  4KSI A;  3KQZ A;  2BFQ A;  4UML A;  3JZT A;  4ZY2 A;  3EWO A;  2X47 A;  5FSX A;  5FSZ A;  1BLL E;  2L8R A;  1HJZ A;  3H8G A;  4R6T A;  4J5S A;  2WCT A;  4X2T A;  1SPV A;  1TXZ A;  3KQX A;  3VFQ A;  4JCA A;  1NJR A;  5CB3 A;  4ABL A;  3H8E A;  1BPM A;  4TU0 A;  4ETK A;  1LCP A;  2JZE A;  3GPO A;  4ETJ A;  4JLL A;  2FAV A;  3ETI A;  3EJG A;  4GVW A;  1LAN A;  1LAM A;  2RNK A;  4ESS A;  3H8F A;  4GUA A;  4J4Z A;  1ZR3 A; 
#chains in the Genus database with same CATH homology
 5HIH A;  2FXK A;  3PEI A;  4ZY0 A;  4K0C A;  5CBM A;  3EWQ A;  3EKE A;  1YD9 A;  1ZR5 A;  2FG1 A;  3SII A;  5FSV A;  4ZX9 A;  2AFC A;  4ZYQ A;  2XD7 A;  1TY8 A;  4ZI6 A;  3SIJ A;  3SIG A;  4K3N A;  4ABK A;  2DX6 A;  3IID A;  2ACF A;  4D86 A;  3Q6Z A;  3IJ3 A;  4J5R A;  3IIF A;  2LGR A;  5FSU A;  1VHU A;  5DUS A;  4JVV A;  3SIH A;  3T8W A;  3V2B A;  2VRI A;  3KZW A;  1GYT A;  5E3B A;  5CMS A;  3EW5 A;  4GVV A;  3GPG A;  3GQO A;  4JGK A;  2BFR A;  3EWP A;  5D8N A;  1BPN A;  3V45 A;  4R7M A;  4ZX8 A;  2J9A A;  4ZY1 A;  3EJF A;  4IQY A;  3KR5 A;  3GQE A;  3Q71 A;  4R76 A;  1LAP A;  4KYB A;  5AIL A;  2EEE A;  5FSY A;  3KR4 A;  5CB5 A;  5HOL A;  3GPQ A;  4J5Q A;  3JRU A;  2EWB A;  3EWR A;  4KSI A;  3KQZ A;  2BFQ A;  4UML A;  3JZT A;  4ZY2 A;  3EWO A;  2X47 A;  5FSX A;  5FSZ A;  1BLL E;  2L8R A;  1HJZ A;  3H8G A;  4R6T A;  4J5S A;  4X2T A;  1SPV A;  1TXZ A;  3KQX A;  3VFQ A;  4JCA A;  1NJR A;  5CB3 A;  4ABL A;  3H8E A;  1BPM A;  4TU0 A;  4ETK A;  1LCP A;  3GPO A;  4ETJ A;  4JLL A;  2FAV A;  3ETI A;  3EJG A;  4GVW A;  1LAN A;  1LAM A;  4ESS A;  3H8F A;  4GUA A;  4J4Z A;  1ZR3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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