2JZEA

Nmr structure of the domain 527-651 of the sars-cov nonstructural protein nsp3, single conformer closest to the mean coordinates of an ensemble of twenty energy minimized conformers
Total Genus 37
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
129
structure length
129
Chain Sequence
GSHMGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Replicase polyprotein 1ab
publication title Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold.
pubmed doi rcsb
source organism Sars coronavirus
total genus 37
structure length 129
sequence length 129
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2008-01-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.20 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E; domain 1 2jzeA01
2JZEA 2KQVA 2W2GA 2WCTA 2JZDA 2RNKA 2JZFA
chains in the Genus database with same CATH superfamily
3Q71A 3EWPA 2KQVA 3H8GA 4ZX8A 4ETKA 4ZY0A 1HJZA 5D8NA 2ACFA 3SIGA 3EJFA 3GPOA 3EKEA 1NJRA 4ZY1A 1ZR5A 4JVVA 2JZDA 5HOLA 5E3BA 5DUSA 5HIHA 3GPQA 2FXKA 2AFCA 4IQYA 5AILA 4ABLA 1LAPA 5CBMA 3PEIA 2EWBA 1TXZA 2WCTA 3IIFA 5FSZA 3GPGA 1BPMA 4R76A 5FSXA 4D86A 4JLLA 5FSYA 4J5SA 4R7MA 4JGKA 3KZWA 3SIHA 4TU0A 1BPNA 3EJGA 2J9AA 3SIIA 4ETJA 4ZI6A 1VHUA 5FSUA 5CB3A 2BFQA 4KYBA 3EWQA 5FSVA 2JZFA 4R6TA 5CMSA 3EWRA 4ZYQA 3EWOA 4K3NA 3ETIA 1YD9A 1SPVA 3KQZA 1BLLE 3IJ3A 2VRIA 3GQOA 1ZR3A 4KSIA 4JCAA 1LCPA 3IIDA 2RNKA 4K0CA 1GYTA 4UMLA 2XD7A 2FAVA 4ESSA 4GVVA 2BFRA 1TY8A 2FG1A 3T8WA 3H8FA 2X47A 4J5RA 3JRUA 3KR4A 4ZY2A 3GQEA 5CB5A 3VFQA 1LAMA 4J5QA 3V45A 3KR5A 2DX6A 4X2TA 4GVWA 2L8RA 3H8EA 3SIJA 2W2GA 3KQXA 2LGRA 3EW5A 2JZEA 4ZX9A 3V2BA 3JZTA 2EEEA 4GUAA 4J4ZA 4ABKA 1LANA 3Q6ZA
chains in the Genus database with same CATH topology
2JZEA 2KQVA 2W2GA 2WCTA 2JZDA 2RNKA 2JZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JZE A;  2KQV A;  2W2G A;  2WCT A;  2JZD A;  2RNK A;  2JZF A; 
#chains in the Genus database with same CATH topology
 3Q71 A;  3EWP A;  2KQV A;  3H8G A;  4ZX8 A;  4ETK A;  4ZY0 A;  1HJZ A;  5D8N A;  2ACF A;  3SIG A;  3EJF A;  3GPO A;  3EKE A;  1NJR A;  4ZY1 A;  1ZR5 A;  4JVV A;  2JZD A;  5HOL A;  5E3B A;  5DUS A;  5HIH A;  3GPQ A;  2FXK A;  2AFC A;  4IQY A;  5AIL A;  4ABL A;  1LAP A;  5CBM A;  3PEI A;  2EWB A;  1TXZ A;  2WCT A;  3IIF A;  5FSZ A;  3GPG A;  1BPM A;  4R76 A;  5FSX A;  4D86 A;  4JLL A;  5FSY A;  4J5S A;  4R7M A;  4JGK A;  3KZW A;  3SIH A;  4TU0 A;  1BPN A;  3EJG A;  2J9A A;  3SII A;  4ETJ A;  4ZI6 A;  1VHU A;  5FSU A;  5CB3 A;  2BFQ A;  4KYB A;  3EWQ A;  5FSV A;  2JZF A;  4R6T A;  5CMS A;  3EWR A;  4ZYQ A;  3EWO A;  4K3N A;  3ETI A;  1YD9 A;  1SPV A;  3KQZ A;  1BLL E;  3IJ3 A;  2VRI A;  3GQO A;  1ZR3 A;  4KSI A;  4JCA A;  1LCP A;  3IID A;  2RNK A;  4K0C A;  1GYT A;  4UML A;  2XD7 A;  2FAV A;  4ESS A;  4GVV A;  2BFR A;  1TY8 A;  2FG1 A;  3T8W A;  3H8F A;  2X47 A;  4J5R A;  3JRU A;  3KR4 A;  4ZY2 A;  3GQE A;  5CB5 A;  3VFQ A;  1LAM A;  4J5Q A;  3V45 A;  3KR5 A;  2DX6 A;  4X2T A;  4GVW A;  2L8R A;  3H8E A;  3SIJ A;  2W2G A;  3KQX A;  2LGR A;  3EW5 A;  2JZE A;  4ZX9 A;  3V2B A;  3JZT A;  2EEE A;  4GUA A;  4J4Z A;  4ABK A;  1LAN A;  3Q6Z A; 
#chains in the Genus database with same CATH homology
 2JZE A;  2KQV A;  2W2G A;  2WCT A;  2JZD A;  2RNK A;  2JZF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...