4J5QA

Targ1 (c6orf130), terminal adp-ribose glycohydrolase 1, apo structure
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
146
structure length
146
Chain Sequence
EDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.
pubmed doi rcsb
molecule tags Hydrolase
source organism Homo sapiens
molecule keywords O-acetyl-ADP-ribose deacetylase 1
total genus 48
structure length 146
sequence length 146
ec nomenclature ec 3.5.1.-:
pdb deposition date 2013-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 4j5qA01
3KR4A 5FSVA 4ZI6A 3SIJA 3GQOA 1BLLE 2VRIA 3Q6ZA 2EEEA 2EWBA 1YD9A 2J9AA 3H8FA 2XD7A 2LGRA 5CB5A 1TXZA 3IIFA 3ETIA 2ACFA 1TY8A 2X47A 4KSIA 3JRUA 1ZR3A 2BFRA 4JLLA 4GUAA 2FXKA 3IIDA 1HJZA 4X2TA 4TU0A 4K0CA 3VFQA 2BFQA 4ETKA 3EWPA 4ZY2A 1BPNA 3H8GA 3V45A 4JVVA 4ZY1A 3SIHA 1LAMA 3T8WA 4ETJA 4J5RA 4GVWA 3SIIA 4ABKA 4R6TA 3GPQA 2AFCA 4ZYQA 3JZTA 4R76A 5CMSA 5HIHA 4ESSA 3GPOA 4D86A 4KYBA 1ZR5A 5E3BA 5FSXA 3Q71A 2DX6A 3EKEA 3KZWA 3H8EA 5AILA 4ZX9A 1NJRA 5HOLA 3SIGA 4J4ZA 3V2BA 3GQEA 5CB3A 4UMLA 3EWQA 5FSUA 4ZY0A 4K3NA 4JGKA 3EWRA 2FAVA 1GYTA 1LAPA 5D8NA 1LANA 3EWOA 3GPGA 3EJGA 4JCAA 4J5QA 3IJ3A 5DUSA 5CBMA 2FG1A 4ZX8A 4R7MA 1VHUA 3PEIA 1LCPA 2L8RA 5FSZA 3KQXA 1BPMA 5FSYA 1SPVA 3EW5A 4GVVA 4IQYA 3KR5A 3KQZA 3EJFA 4J5SA 4ABLA
chains in the Genus database with same CATH superfamily
3KR4A 5FSVA 4ZI6A 3SIJA 3GQOA 1BLLE 2VRIA 3Q6ZA 2EEEA 2EWBA 1YD9A 2J9AA 3H8FA 2XD7A 2LGRA 5CB5A 1TXZA 3IIFA 3ETIA 2ACFA 1TY8A 2X47A 4KSIA 3JRUA 1ZR3A 2BFRA 4JLLA 4GUAA 2FXKA 3IIDA 1HJZA 4X2TA 4TU0A 4K0CA 3VFQA 2BFQA 4ETKA 3EWPA 2JZFA 4ZY2A 1BPNA 3H8GA 3V45A 4JVVA 4ZY1A 3SIHA 1LAMA 3T8WA 4ETJA 4J5RA 4GVWA 3SIIA 4ABKA 4R6TA 3GPQA 2AFCA 4ZYQA 3JZTA 2W2GA 4R76A 2WCTA 5CMSA 5HIHA 4ESSA 3GPOA 4D86A 4KYBA 1ZR5A 5E3BA 5FSXA 3Q71A 2DX6A 3EKEA 2JZDA 3KZWA 3H8EA 5AILA 4ZX9A 1NJRA 5HOLA 2KQVA 3SIGA 4J4ZA 3V2BA 3GQEA 5CB3A 4UMLA 3EWQA 5FSUA 4ZY0A 4K3NA 4JGKA 3EWRA 2RNKA 2FAVA 1GYTA 1LAPA 5D8NA 1LANA 3EWOA 3GPGA 3EJGA 2JZEA 4JCAA 4J5QA 3IJ3A 5DUSA 5CBMA 2FG1A 4ZX8A 4R7MA 1VHUA 3PEIA 1LCPA 2L8RA 5FSZA 3KQXA 1BPMA 5FSYA 1SPVA 3EW5A 4GVVA 4IQYA 3KR5A 3KQZA 3EJFA 4J5SA 4ABLA
chains in the Genus database with same CATH topology
3KR4A 5FSVA 4ZI6A 3SIJA 3GQOA 1BLLE 2VRIA 3Q6ZA 2EEEA 2EWBA 1YD9A 2J9AA 3H8FA 2XD7A 2LGRA 5CB5A 1TXZA 3IIFA 3ETIA 2ACFA 1TY8A 2X47A 4KSIA 3JRUA 1ZR3A 2BFRA 4JLLA 4GUAA 2FXKA 3IIDA 1HJZA 4X2TA 4TU0A 4K0CA 3VFQA 2BFQA 4ETKA 3EWPA 4ZY2A 1BPNA 3H8GA 3V45A 4JVVA 4ZY1A 3SIHA 1LAMA 3T8WA 4ETJA 4J5RA 4GVWA 3SIIA 4ABKA 4R6TA 3GPQA 2AFCA 4ZYQA 3JZTA 4R76A 5CMSA 5HIHA 4ESSA 3GPOA 4D86A 4KYBA 1ZR5A 5E3BA 5FSXA 3Q71A 2DX6A 3EKEA 3KZWA 3H8EA 5AILA 4ZX9A 1NJRA 5HOLA 3SIGA 4J4ZA 3V2BA 3GQEA 5CB3A 4UMLA 3EWQA 5FSUA 4ZY0A 4K3NA 4JGKA 3EWRA 2FAVA 1GYTA 1LAPA 5D8NA 1LANA 3EWOA 3GPGA 3EJGA 4JCAA 4J5QA 3IJ3A 5DUSA 5CBMA 2FG1A 4ZX8A 4R7MA 1VHUA 3PEIA 1LCPA 2L8RA 5FSZA 3KQXA 1BPMA 5FSYA 1SPVA 3EW5A 4GVVA 4IQYA 3KR5A 3KQZA 3EJFA 4J5SA 4ABLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KR4 A;  5FSV A;  4ZI6 A;  3SIJ A;  3GQO A;  1BLL E;  2VRI A;  3Q6Z A;  2EEE A;  2EWB A;  1YD9 A;  2J9A A;  3H8F A;  2XD7 A;  2LGR A;  5CB5 A;  1TXZ A;  3IIF A;  3ETI A;  2ACF A;  1TY8 A;  2X47 A;  4KSI A;  3JRU A;  1ZR3 A;  2BFR A;  4JLL A;  4GUA A;  2FXK A;  3IID A;  1HJZ A;  4X2T A;  4TU0 A;  4K0C A;  3VFQ A;  2BFQ A;  4ETK A;  3EWP A;  4ZY2 A;  1BPN A;  3H8G A;  3V45 A;  4JVV A;  4ZY1 A;  3SIH A;  1LAM A;  3T8W A;  4ETJ A;  4J5R A;  4GVW A;  3SII A;  4ABK A;  4R6T A;  3GPQ A;  2AFC A;  4ZYQ A;  3JZT A;  4R76 A;  5CMS A;  5HIH A;  4ESS A;  3GPO A;  4D86 A;  4KYB A;  1ZR5 A;  5E3B A;  5FSX A;  3Q71 A;  2DX6 A;  3EKE A;  3KZW A;  3H8E A;  5AIL A;  4ZX9 A;  1NJR A;  5HOL A;  3SIG A;  4J4Z A;  3V2B A;  3GQE A;  5CB3 A;  4UML A;  3EWQ A;  5FSU A;  4ZY0 A;  4K3N A;  4JGK A;  3EWR A;  2FAV A;  1GYT A;  1LAP A;  5D8N A;  1LAN A;  3EWO A;  3GPG A;  3EJG A;  4JCA A;  4J5Q A;  3IJ3 A;  5DUS A;  5CBM A;  2FG1 A;  4ZX8 A;  4R7M A;  1VHU A;  3PEI A;  1LCP A;  2L8R A;  5FSZ A;  3KQX A;  1BPM A;  5FSY A;  1SPV A;  3EW5 A;  4GVV A;  4IQY A;  3KR5 A;  3KQZ A;  3EJF A;  4J5S A;  4ABL A; 
#chains in the Genus database with same CATH topology
 3KR4 A;  5FSV A;  4ZI6 A;  3SIJ A;  3GQO A;  1BLL E;  2VRI A;  3Q6Z A;  2EEE A;  2EWB A;  1YD9 A;  2J9A A;  3H8F A;  2XD7 A;  2LGR A;  5CB5 A;  1TXZ A;  3IIF A;  3ETI A;  2ACF A;  1TY8 A;  2X47 A;  4KSI A;  3JRU A;  1ZR3 A;  2BFR A;  4JLL A;  4GUA A;  2FXK A;  3IID A;  1HJZ A;  4X2T A;  4TU0 A;  4K0C A;  3VFQ A;  2BFQ A;  4ETK A;  3EWP A;  2JZF A;  4ZY2 A;  1BPN A;  3H8G A;  3V45 A;  4JVV A;  4ZY1 A;  3SIH A;  1LAM A;  3T8W A;  4ETJ A;  4J5R A;  4GVW A;  3SII A;  4ABK A;  4R6T A;  3GPQ A;  2AFC A;  4ZYQ A;  3JZT A;  2W2G A;  4R76 A;  2WCT A;  5CMS A;  5HIH A;  4ESS A;  3GPO A;  4D86 A;  4KYB A;  1ZR5 A;  5E3B A;  5FSX A;  3Q71 A;  2DX6 A;  3EKE A;  2JZD A;  3KZW A;  3H8E A;  5AIL A;  4ZX9 A;  1NJR A;  5HOL A;  2KQV A;  3SIG A;  4J4Z A;  3V2B A;  3GQE A;  5CB3 A;  4UML A;  3EWQ A;  5FSU A;  4ZY0 A;  4K3N A;  4JGK A;  3EWR A;  2RNK A;  2FAV A;  1GYT A;  1LAP A;  5D8N A;  1LAN A;  3EWO A;  3GPG A;  3EJG A;  2JZE A;  4JCA A;  4J5Q A;  3IJ3 A;  5DUS A;  5CBM A;  2FG1 A;  4ZX8 A;  4R7M A;  1VHU A;  3PEI A;  1LCP A;  2L8R A;  5FSZ A;  3KQX A;  1BPM A;  5FSY A;  1SPV A;  3EW5 A;  4GVV A;  4IQY A;  3KR5 A;  3KQZ A;  3EJF A;  4J5S A;  4ABL A; 
#chains in the Genus database with same CATH homology
 3KR4 A;  5FSV A;  4ZI6 A;  3SIJ A;  3GQO A;  1BLL E;  2VRI A;  3Q6Z A;  2EEE A;  2EWB A;  1YD9 A;  2J9A A;  3H8F A;  2XD7 A;  2LGR A;  5CB5 A;  1TXZ A;  3IIF A;  3ETI A;  2ACF A;  1TY8 A;  2X47 A;  4KSI A;  3JRU A;  1ZR3 A;  2BFR A;  4JLL A;  4GUA A;  2FXK A;  3IID A;  1HJZ A;  4X2T A;  4TU0 A;  4K0C A;  3VFQ A;  2BFQ A;  4ETK A;  3EWP A;  4ZY2 A;  1BPN A;  3H8G A;  3V45 A;  4JVV A;  4ZY1 A;  3SIH A;  1LAM A;  3T8W A;  4ETJ A;  4J5R A;  4GVW A;  3SII A;  4ABK A;  4R6T A;  3GPQ A;  2AFC A;  4ZYQ A;  3JZT A;  4R76 A;  5CMS A;  5HIH A;  4ESS A;  3GPO A;  4D86 A;  4KYB A;  1ZR5 A;  5E3B A;  5FSX A;  3Q71 A;  2DX6 A;  3EKE A;  3KZW A;  3H8E A;  5AIL A;  4ZX9 A;  1NJR A;  5HOL A;  3SIG A;  4J4Z A;  3V2B A;  3GQE A;  5CB3 A;  4UML A;  3EWQ A;  5FSU A;  4ZY0 A;  4K3N A;  4JGK A;  3EWR A;  2FAV A;  1GYT A;  1LAP A;  5D8N A;  1LAN A;  3EWO A;  3GPG A;  3EJG A;  4JCA A;  4J5Q A;  3IJ3 A;  5DUS A;  5CBM A;  2FG1 A;  4ZX8 A;  4R7M A;  1VHU A;  3PEI A;  1LCP A;  2L8R A;  5FSZ A;  3KQX A;  1BPM A;  5FSY A;  1SPV A;  3EW5 A;  4GVV A;  4IQY A;  3KR5 A;  3KQZ A;  3EJF A;  4J5S A;  4ABL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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