2BFQA

Macro domains are adp-ribose binding molecules
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
191
structure length
191
Chain Sequence
b'EVLFEAKVGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFERSL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Macro Domain is an Adp-Ribose Binding Module.
pubmed doi rcsb
molecule keywords HYPOTHETICAL PROTEIN AF1521
source organism Archaeoglobus fulgidus
molecule tags Adp ribose-binding protein
total genus 68
structure length 191
sequence length 191
ec nomenclature
pdb deposition date 2004-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 2bfqA00
3EJGA 3Q6ZA 1BLLE 3GQOA 3KZWA 4ETJA 1LANA 5CB3A 2LGRA 5D8NA 4IQYA 3GPGA 3IIDA 5CB5A 4JGKA 2DX6A 4K3NA 3IIFA 3GQEA 3JRUA 3Q71A 5CBMA 2XD7A 2ACFA 4J5QA 3VFQA 4X2TA 3EKEA 5FSUA 4R6TA 4KSIA 3EWPA 4J5RA 2AFCA 2BFRA 3IJ3A 1ZR5A 4GVVA 4GUAA 1SPVA 3ETIA 4KYBA 3PEIA 2EWBA 3EWQA 4ZI6A 3KR5A 1LCPA 5E3BA 4TU0A 4GVWA 5FSXA 3H8FA 4UMLA 4K0CA 4JCAA 4J5SA 4JVVA 3KQXA 5HIHA 4ABKA 4R76A 3H8EA 3SIGA 5FSVA 4ESSA 4ETKA 5CMSA 1HJZA 4ZY1A 4J4ZA 1ZR3A 4R7MA 3EWRA 1BPNA 1VHUA 1LAMA 4ZY2A 3EW5A 2L8RA 2VRIA 5HOLA 1TXZA 1NJRA 1BPMA 4ZX9A 1LAPA 2EEEA 3V2BA 2FXKA 5AILA 3SIJA 4D86A 3GPQA 3KR4A 3GPOA 3EJFA 3JZTA 2FAVA 5FSYA 2X47A 4ZYQA 4ZY0A 4ABLA 3EWOA 3T8WA 3KQZA 1TY8A 3V45A 5DUSA 5FSZA 2FG1A 1YD9A 1GYTA 3SIHA 2J9AA 2BFQA 3H8GA 4ZX8A 4JLLA 3SIIA
chains in the Genus database with same CATH superfamily
3EJGA 3Q6ZA 1BLLE 3GQOA 3KZWA 4ETJA 1LANA 5CB3A 2LGRA 5D8NA 4IQYA 3GPGA 3IIDA 2KQVA 5CB5A 4JGKA 2DX6A 4K3NA 3IIFA 3GQEA 3JRUA 3Q71A 5CBMA 2XD7A 2ACFA 4J5QA 3VFQA 4X2TA 3EKEA 5FSUA 4R6TA 3EWPA 4KSIA 4J5RA 2AFCA 2BFRA 3IJ3A 1ZR5A 4GVVA 4GUAA 1SPVA 3ETIA 4KYBA 3PEIA 2EWBA 3EWQA 4ZI6A 3KR5A 2W2GA 1LCPA 5E3BA 4TU0A 4GVWA 5FSXA 3H8FA 4UMLA 4K0CA 4JCAA 4J5SA 4JVVA 3KQXA 5HIHA 4ABKA 4R76A 3H8EA 3SIGA 5FSVA 4ESSA 4ETKA 5CMSA 1HJZA 4ZY1A 4J4ZA 1ZR3A 4R7MA 3EWRA 1BPNA 1VHUA 1LAMA 4ZY2A 2JZFA 3EW5A 2L8RA 2VRIA 5HOLA 1TXZA 1NJRA 1BPMA 4ZX9A 1LAPA 2EEEA 3V2BA 2FXKA 5AILA 3SIJA 4D86A 3GPQA 3KR4A 3GPOA 3EJFA 3JZTA 2FAVA 2JZDA 5FSYA 2X47A 4ZYQA 2JZEA 4ZY0A 4ABLA 3EWOA 2WCTA 3T8WA 3KQZA 1TY8A 3V45A 5DUSA 5FSZA 2FG1A 1YD9A 1GYTA 2RNKA 3SIHA 2J9AA 2BFQA 3H8GA 4ZX8A 4JLLA 3SIIA
chains in the Genus database with same CATH topology
3EJGA 3Q6ZA 1BLLE 3GQOA 3KZWA 4ETJA 1LANA 5CB3A 2LGRA 5D8NA 4IQYA 3GPGA 3IIDA 5CB5A 4JGKA 2DX6A 4K3NA 3IIFA 3GQEA 3JRUA 3Q71A 5CBMA 2XD7A 2ACFA 4J5QA 3VFQA 4X2TA 3EKEA 5FSUA 4R6TA 4KSIA 3EWPA 4J5RA 2AFCA 2BFRA 3IJ3A 1ZR5A 4GVVA 4GUAA 1SPVA 3ETIA 4KYBA 3PEIA 2EWBA 3EWQA 4ZI6A 3KR5A 1LCPA 5E3BA 4TU0A 4GVWA 5FSXA 3H8FA 4UMLA 4K0CA 4JCAA 4J5SA 4JVVA 3KQXA 5HIHA 4ABKA 4R76A 3H8EA 3SIGA 5FSVA 4ESSA 4ETKA 5CMSA 1HJZA 4ZY1A 4J4ZA 1ZR3A 4R7MA 3EWRA 1BPNA 1VHUA 1LAMA 4ZY2A 3EW5A 2L8RA 2VRIA 5HOLA 1TXZA 1NJRA 1BPMA 4ZX9A 1LAPA 2EEEA 3V2BA 2FXKA 5AILA 3SIJA 4D86A 3GPQA 3KR4A 3GPOA 3EJFA 3JZTA 2FAVA 5FSYA 2X47A 4ZYQA 4ZY0A 4ABLA 3EWOA 3T8WA 3KQZA 1TY8A 3V45A 5DUSA 5FSZA 2FG1A 1YD9A 1GYTA 3SIHA 2J9AA 2BFQA 3H8GA 4ZX8A 4JLLA 3SIIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EJG A;  3Q6Z A;  1BLL E;  3GQO A;  3KZW A;  4ETJ A;  1LAN A;  5CB3 A;  2LGR A;  5D8N A;  4IQY A;  3GPG A;  3IID A;  5CB5 A;  4JGK A;  2DX6 A;  4K3N A;  3IIF A;  3GQE A;  3JRU A;  3Q71 A;  5CBM A;  2XD7 A;  2ACF A;  4J5Q A;  3VFQ A;  4X2T A;  3EKE A;  5FSU A;  4R6T A;  4KSI A;  3EWP A;  4J5R A;  2AFC A;  2BFR A;  3IJ3 A;  1ZR5 A;  4GVV A;  4GUA A;  1SPV A;  3ETI A;  4KYB A;  3PEI A;  2EWB A;  3EWQ A;  4ZI6 A;  3KR5 A;  1LCP A;  5E3B A;  4TU0 A;  4GVW A;  5FSX A;  3H8F A;  4UML A;  4K0C A;  4JCA A;  4J5S A;  4JVV A;  3KQX A;  5HIH A;  4ABK A;  4R76 A;  3H8E A;  3SIG A;  5FSV A;  4ESS A;  4ETK A;  5CMS A;  1HJZ A;  4ZY1 A;  4J4Z A;  1ZR3 A;  4R7M A;  3EWR A;  1BPN A;  1VHU A;  1LAM A;  4ZY2 A;  3EW5 A;  2L8R A;  2VRI A;  5HOL A;  1TXZ A;  1NJR A;  1BPM A;  4ZX9 A;  1LAP A;  2EEE A;  3V2B A;  2FXK A;  5AIL A;  3SIJ A;  4D86 A;  3GPQ A;  3KR4 A;  3GPO A;  3EJF A;  3JZT A;  2FAV A;  5FSY A;  2X47 A;  4ZYQ A;  4ZY0 A;  4ABL A;  3EWO A;  3T8W A;  3KQZ A;  1TY8 A;  3V45 A;  5DUS A;  5FSZ A;  2FG1 A;  1YD9 A;  1GYT A;  3SIH A;  2J9A A;  2BFQ A;  3H8G A;  4ZX8 A;  4JLL A;  3SII A; 
#chains in the Genus database with same CATH topology
 3EJG A;  3Q6Z A;  1BLL E;  3GQO A;  3KZW A;  4ETJ A;  1LAN A;  5CB3 A;  2LGR A;  5D8N A;  4IQY A;  3GPG A;  3IID A;  2KQV A;  5CB5 A;  4JGK A;  2DX6 A;  4K3N A;  3IIF A;  3GQE A;  3JRU A;  3Q71 A;  5CBM A;  2XD7 A;  2ACF A;  4J5Q A;  3VFQ A;  4X2T A;  3EKE A;  5FSU A;  4R6T A;  3EWP A;  4KSI A;  4J5R A;  2AFC A;  2BFR A;  3IJ3 A;  1ZR5 A;  4GVV A;  4GUA A;  1SPV A;  3ETI A;  4KYB A;  3PEI A;  2EWB A;  3EWQ A;  4ZI6 A;  3KR5 A;  2W2G A;  1LCP A;  5E3B A;  4TU0 A;  4GVW A;  5FSX A;  3H8F A;  4UML A;  4K0C A;  4JCA A;  4J5S A;  4JVV A;  3KQX A;  5HIH A;  4ABK A;  4R76 A;  3H8E A;  3SIG A;  5FSV A;  4ESS A;  4ETK A;  5CMS A;  1HJZ A;  4ZY1 A;  4J4Z A;  1ZR3 A;  4R7M A;  3EWR A;  1BPN A;  1VHU A;  1LAM A;  4ZY2 A;  2JZF A;  3EW5 A;  2L8R A;  2VRI A;  5HOL A;  1TXZ A;  1NJR A;  1BPM A;  4ZX9 A;  1LAP A;  2EEE A;  3V2B A;  2FXK A;  5AIL A;  3SIJ A;  4D86 A;  3GPQ A;  3KR4 A;  3GPO A;  3EJF A;  3JZT A;  2FAV A;  2JZD A;  5FSY A;  2X47 A;  4ZYQ A;  2JZE A;  4ZY0 A;  4ABL A;  3EWO A;  2WCT A;  3T8W A;  3KQZ A;  1TY8 A;  3V45 A;  5DUS A;  5FSZ A;  2FG1 A;  1YD9 A;  1GYT A;  2RNK A;  3SIH A;  2J9A A;  2BFQ A;  3H8G A;  4ZX8 A;  4JLL A;  3SII A; 
#chains in the Genus database with same CATH homology
 3EJG A;  3Q6Z A;  1BLL E;  3GQO A;  3KZW A;  4ETJ A;  1LAN A;  5CB3 A;  2LGR A;  5D8N A;  4IQY A;  3GPG A;  3IID A;  5CB5 A;  4JGK A;  2DX6 A;  4K3N A;  3IIF A;  3GQE A;  3JRU A;  3Q71 A;  5CBM A;  2XD7 A;  2ACF A;  4J5Q A;  3VFQ A;  4X2T A;  3EKE A;  5FSU A;  4R6T A;  4KSI A;  3EWP A;  4J5R A;  2AFC A;  2BFR A;  3IJ3 A;  1ZR5 A;  4GVV A;  4GUA A;  1SPV A;  3ETI A;  4KYB A;  3PEI A;  2EWB A;  3EWQ A;  4ZI6 A;  3KR5 A;  1LCP A;  5E3B A;  4TU0 A;  4GVW A;  5FSX A;  3H8F A;  4UML A;  4K0C A;  4JCA A;  4J5S A;  4JVV A;  3KQX A;  5HIH A;  4ABK A;  4R76 A;  3H8E A;  3SIG A;  5FSV A;  4ESS A;  4ETK A;  5CMS A;  1HJZ A;  4ZY1 A;  4J4Z A;  1ZR3 A;  4R7M A;  3EWR A;  1BPN A;  1VHU A;  1LAM A;  4ZY2 A;  3EW5 A;  2L8R A;  2VRI A;  5HOL A;  1TXZ A;  1NJR A;  1BPM A;  4ZX9 A;  1LAP A;  2EEE A;  3V2B A;  2FXK A;  5AIL A;  3SIJ A;  4D86 A;  3GPQ A;  3KR4 A;  3GPO A;  3EJF A;  3JZT A;  2FAV A;  5FSY A;  2X47 A;  4ZYQ A;  4ZY0 A;  4ABL A;  3EWO A;  3T8W A;  3KQZ A;  1TY8 A;  3V45 A;  5DUS A;  5FSZ A;  2FG1 A;  1YD9 A;  1GYT A;  3SIH A;  2J9A A;  2BFQ A;  3H8G A;  4ZX8 A;  4JLL A;  3SII A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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