2BFQA

Macro domains are adp-ribose binding molecules
Total Genus 68
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
191
structure length
191
Chain Sequence
EVLFEAKVGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFERSL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Adp ribose-binding protein
source organism Archaeoglobus fulgidus
publication title The Macro Domain is an Adp-Ribose Binding Module.
pubmed doi rcsb
molecule keywords HYPOTHETICAL PROTEIN AF1521
total genus 68
structure length 191
sequence length 191
ec nomenclature
pdb deposition date 2004-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 2bfqA00
3SIJA 5FSUA 1LAPA 1BPMA 5CMSA 3KQZA 4ZYQA 1NJRA 1TXZA 3VFQA 4ETKA 2X47A 3PEIA 4JGKA 3KR4A 4J5RA 5HIHA 2XD7A 2FG1A 4ABLA 4ZI6A 4ESSA 4ZY0A 1BPNA 4R76A 3H8GA 4JVVA 4ZX8A 2BFQA 4J5SA 4KSIA 1LANA 2BFRA 3IIFA 4GVVA 3T8WA 4ZX9A 4ZY2A 4JLLA 4K3NA 3EWRA 3H8FA 4ZY1A 5CB5A 4K0CA 4TU0A 5FSYA 3IIDA 3EKEA 5FSXA 1LAMA 4ETJA 3V45A 5FSZA 5HOLA 2EWBA 1SPVA 1TY8A 5FSVA 4J4ZA 1BLLE 3KZWA 1VHUA 5CB3A 3ETIA 2FAVA 3V2BA 4ABKA 4UMLA 3SIGA 2FXKA 4R6TA 3Q71A 5E3BA 5D8NA 5DUSA 1HJZA 4D86A 3IJ3A 3SIIA 3EW5A 4KYBA 3GQOA 1GYTA 3EWOA 3JRUA 3H8EA 2LGRA 2L8RA 3KQXA 4GUAA 2DX6A 5CBMA 1ZR3A 3EWQA 3Q6ZA 4JCAA 3EJGA 5AILA 2ACFA 3SIHA 1YD9A 3GPGA 4R7MA 3EJFA 2J9AA 2AFCA 3GQEA 3EWPA 3GPOA 4IQYA 1LCPA 4X2TA 4GVWA 1ZR5A 2EEEA 3KR5A 2VRIA 4J5QA 3JZTA 3GPQA
chains in the Genus database with same CATH superfamily
3SIJA 5FSUA 1LAPA 1BPMA 5CMSA 3KQZA 4ZYQA 1NJRA 1TXZA 3VFQA 4ETKA 2X47A 3PEIA 4JGKA 3KR4A 4J5RA 5HIHA 2XD7A 2FG1A 4ABLA 4ZI6A 4ESSA 4ZY0A 1BPNA 2RNKA 4R76A 2W2GA 3H8GA 4JVVA 4ZX8A 2BFQA 4J5SA 4KSIA 1LANA 2BFRA 3IIFA 2JZEA 4GVVA 3T8WA 4ZX9A 4ZY2A 4JLLA 4K3NA 3EWRA 3H8FA 4ZY1A 5CB5A 4K0CA 4TU0A 2JZDA 5FSYA 3IIDA 3EKEA 5FSXA 1LAMA 4ETJA 3V45A 5FSZA 5HOLA 2EWBA 1SPVA 1TY8A 5FSVA 4J4ZA 1BLLE 3KZWA 1VHUA 5CB3A 3ETIA 2FAVA 3V2BA 4ABKA 4UMLA 3SIGA 2FXKA 4R6TA 3Q71A 5E3BA 5D8NA 5DUSA 1HJZA 4D86A 3IJ3A 3SIIA 3EW5A 4KYBA 3GQOA 1GYTA 3EWOA 3JRUA 3H8EA 2LGRA 2L8RA 3KQXA 4GUAA 2DX6A 5CBMA 2WCTA 1ZR3A 3EWQA 3Q6ZA 4JCAA 3EJGA 5AILA 2ACFA 3SIHA 1YD9A 3GPGA 4R7MA 3EJFA 2J9AA 2AFCA 3GQEA 2KQVA 3EWPA 3GPOA 4IQYA 1LCPA 4X2TA 4GVWA 1ZR5A 2EEEA 3KR5A 2VRIA 4J5QA 2JZFA 3JZTA 3GPQA
chains in the Genus database with same CATH topology
3SIJA 5FSUA 1LAPA 1BPMA 5CMSA 3KQZA 4ZYQA 1NJRA 1TXZA 3VFQA 4ETKA 2X47A 3PEIA 4JGKA 3KR4A 4J5RA 5HIHA 2XD7A 2FG1A 4ABLA 4ZI6A 4ESSA 4ZY0A 1BPNA 4R76A 3H8GA 4JVVA 4ZX8A 2BFQA 4J5SA 4KSIA 1LANA 2BFRA 3IIFA 4GVVA 3T8WA 4ZX9A 4ZY2A 4JLLA 4K3NA 3EWRA 3H8FA 4ZY1A 5CB5A 4K0CA 4TU0A 5FSYA 3IIDA 3EKEA 5FSXA 1LAMA 4ETJA 3V45A 5FSZA 5HOLA 2EWBA 1SPVA 1TY8A 5FSVA 4J4ZA 1BLLE 3KZWA 1VHUA 5CB3A 3ETIA 2FAVA 3V2BA 4ABKA 4UMLA 3SIGA 2FXKA 4R6TA 3Q71A 5E3BA 5D8NA 5DUSA 1HJZA 4D86A 3IJ3A 3SIIA 3EW5A 4KYBA 3GQOA 1GYTA 3EWOA 3JRUA 3H8EA 2LGRA 2L8RA 3KQXA 4GUAA 2DX6A 5CBMA 1ZR3A 3EWQA 3Q6ZA 4JCAA 3EJGA 5AILA 2ACFA 3SIHA 1YD9A 3GPGA 4R7MA 3EJFA 2J9AA 2AFCA 3GQEA 3EWPA 3GPOA 4IQYA 1LCPA 4X2TA 4GVWA 1ZR5A 2EEEA 3KR5A 2VRIA 4J5QA 3JZTA 3GPQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SIJ A;  5FSU A;  1LAP A;  1BPM A;  5CMS A;  3KQZ A;  4ZYQ A;  1NJR A;  1TXZ A;  3VFQ A;  4ETK A;  2X47 A;  3PEI A;  4JGK A;  3KR4 A;  4J5R A;  5HIH A;  2XD7 A;  2FG1 A;  4ABL A;  4ZI6 A;  4ESS A;  4ZY0 A;  1BPN A;  4R76 A;  3H8G A;  4JVV A;  4ZX8 A;  2BFQ A;  4J5S A;  4KSI A;  1LAN A;  2BFR A;  3IIF A;  4GVV A;  3T8W A;  4ZX9 A;  4ZY2 A;  4JLL A;  4K3N A;  3EWR A;  3H8F A;  4ZY1 A;  5CB5 A;  4K0C A;  4TU0 A;  5FSY A;  3IID A;  3EKE A;  5FSX A;  1LAM A;  4ETJ A;  3V45 A;  5FSZ A;  5HOL A;  2EWB A;  1SPV A;  1TY8 A;  5FSV A;  4J4Z A;  1BLL E;  3KZW A;  1VHU A;  5CB3 A;  3ETI A;  2FAV A;  3V2B A;  4ABK A;  4UML A;  3SIG A;  2FXK A;  4R6T A;  3Q71 A;  5E3B A;  5D8N A;  5DUS A;  1HJZ A;  4D86 A;  3IJ3 A;  3SII A;  3EW5 A;  4KYB A;  3GQO A;  1GYT A;  3EWO A;  3JRU A;  3H8E A;  2LGR A;  2L8R A;  3KQX A;  4GUA A;  2DX6 A;  5CBM A;  1ZR3 A;  3EWQ A;  3Q6Z A;  4JCA A;  3EJG A;  5AIL A;  2ACF A;  3SIH A;  1YD9 A;  3GPG A;  4R7M A;  3EJF A;  2J9A A;  2AFC A;  3GQE A;  3EWP A;  3GPO A;  4IQY A;  1LCP A;  4X2T A;  4GVW A;  1ZR5 A;  2EEE A;  3KR5 A;  2VRI A;  4J5Q A;  3JZT A;  3GPQ A; 
#chains in the Genus database with same CATH topology
 3SIJ A;  5FSU A;  1LAP A;  1BPM A;  5CMS A;  3KQZ A;  4ZYQ A;  1NJR A;  1TXZ A;  3VFQ A;  4ETK A;  2X47 A;  3PEI A;  4JGK A;  3KR4 A;  4J5R A;  5HIH A;  2XD7 A;  2FG1 A;  4ABL A;  4ZI6 A;  4ESS A;  4ZY0 A;  1BPN A;  2RNK A;  4R76 A;  2W2G A;  3H8G A;  4JVV A;  4ZX8 A;  2BFQ A;  4J5S A;  4KSI A;  1LAN A;  2BFR A;  3IIF A;  2JZE A;  4GVV A;  3T8W A;  4ZX9 A;  4ZY2 A;  4JLL A;  4K3N A;  3EWR A;  3H8F A;  4ZY1 A;  5CB5 A;  4K0C A;  4TU0 A;  2JZD A;  5FSY A;  3IID A;  3EKE A;  5FSX A;  1LAM A;  4ETJ A;  3V45 A;  5FSZ A;  5HOL A;  2EWB A;  1SPV A;  1TY8 A;  5FSV A;  4J4Z A;  1BLL E;  3KZW A;  1VHU A;  5CB3 A;  3ETI A;  2FAV A;  3V2B A;  4ABK A;  4UML A;  3SIG A;  2FXK A;  4R6T A;  3Q71 A;  5E3B A;  5D8N A;  5DUS A;  1HJZ A;  4D86 A;  3IJ3 A;  3SII A;  3EW5 A;  4KYB A;  3GQO A;  1GYT A;  3EWO A;  3JRU A;  3H8E A;  2LGR A;  2L8R A;  3KQX A;  4GUA A;  2DX6 A;  5CBM A;  2WCT A;  1ZR3 A;  3EWQ A;  3Q6Z A;  4JCA A;  3EJG A;  5AIL A;  2ACF A;  3SIH A;  1YD9 A;  3GPG A;  4R7M A;  3EJF A;  2J9A A;  2AFC A;  3GQE A;  2KQV A;  3EWP A;  3GPO A;  4IQY A;  1LCP A;  4X2T A;  4GVW A;  1ZR5 A;  2EEE A;  3KR5 A;  2VRI A;  4J5Q A;  2JZF A;  3JZT A;  3GPQ A; 
#chains in the Genus database with same CATH homology
 3SIJ A;  5FSU A;  1LAP A;  1BPM A;  5CMS A;  3KQZ A;  4ZYQ A;  1NJR A;  1TXZ A;  3VFQ A;  4ETK A;  2X47 A;  3PEI A;  4JGK A;  3KR4 A;  4J5R A;  5HIH A;  2XD7 A;  2FG1 A;  4ABL A;  4ZI6 A;  4ESS A;  4ZY0 A;  1BPN A;  4R76 A;  3H8G A;  4JVV A;  4ZX8 A;  2BFQ A;  4J5S A;  4KSI A;  1LAN A;  2BFR A;  3IIF A;  4GVV A;  3T8W A;  4ZX9 A;  4ZY2 A;  4JLL A;  4K3N A;  3EWR A;  3H8F A;  4ZY1 A;  5CB5 A;  4K0C A;  4TU0 A;  5FSY A;  3IID A;  3EKE A;  5FSX A;  1LAM A;  4ETJ A;  3V45 A;  5FSZ A;  5HOL A;  2EWB A;  1SPV A;  1TY8 A;  5FSV A;  4J4Z A;  1BLL E;  3KZW A;  1VHU A;  5CB3 A;  3ETI A;  2FAV A;  3V2B A;  4ABK A;  4UML A;  3SIG A;  2FXK A;  4R6T A;  3Q71 A;  5E3B A;  5D8N A;  5DUS A;  1HJZ A;  4D86 A;  3IJ3 A;  3SII A;  3EW5 A;  4KYB A;  3GQO A;  1GYT A;  3EWO A;  3JRU A;  3H8E A;  2LGR A;  2L8R A;  3KQX A;  4GUA A;  2DX6 A;  5CBM A;  1ZR3 A;  3EWQ A;  3Q6Z A;  4JCA A;  3EJG A;  5AIL A;  2ACF A;  3SIH A;  1YD9 A;  3GPG A;  4R7M A;  3EJF A;  2J9A A;  2AFC A;  3GQE A;  3EWP A;  3GPO A;  4IQY A;  1LCP A;  4X2T A;  4GVW A;  1ZR5 A;  2EEE A;  3KR5 A;  2VRI A;  4J5Q A;  3JZT A;  3GPQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...