2RNKA

Nmr structure of the domain 513-651 of the sars-cov nonstructural protein nsp3
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
143
structure length
143
Chain Sequence
GSHMVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold.
pubmed doi rcsb
molecule tags Viral protein
source organism Sars coronavirus
molecule keywords Replicase polyprotein 1ab
total genus 35
structure length 143
sequence length 143
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2008-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11633 SUD-M Single-stranded poly(A) binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.20 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E; domain 1 2rnkA01
2JZEA 2RNKA 2KQVA 2W2GA 2WCTA 2JZDA 2JZFA
chains in the Genus database with same CATH superfamily
3PEIA 4JGKA 5FSYA 3EWQA 4ZY2A 2WCTA 5FSXA 2EWBA 5CB5A 2RNKA 1BPMA 1ZR3A 2KQVA 4J5QA 3GPGA 5FSVA 2BFRA 3EW5A 2EEEA 1LAPA 4ZX9A 4ZYQA 3EJGA 3ETIA 2FAVA 3IIDA 3JRUA 4D86A 3KR5A 2L8RA 5FSUA 3GPOA 2JZFA 2ACFA 5HIHA 4JLLA 4GVVA 2XD7A 2JZDA 4R76A 5DUSA 3V2BA 2W2GA 4GUAA 4ZI6A 2VRIA 3EWRA 3EWPA 1GYTA 3EJFA 3IIFA 4ETJA 4J5SA 1VHUA 4IQYA 4ABKA 4ETKA 4K3NA 3Q6ZA 2J9AA 4TU0A 3H8GA 2FXKA 4R6TA 3SIJA 4ZY0A 3SIGA 4R7MA 4X2TA 5CBMA 3KQZA 4KSIA 4J5RA 3GQEA 3VFQA 3KR4A 1NJRA 1TY8A 3JZTA 3T8WA 4ZY1A 3H8FA 2X47A 4JVVA 2FG1A 1SPVA 4K0CA 3SIIA 4JCAA 2JZEA 4UMLA 3IJ3A 1LAMA 4KYBA 4ABLA 3EKEA 1YD9A 5CB3A 4GVWA 3GPQA 3EWOA 1TXZA 5D8NA 1LANA 2LGRA 4J4ZA 3H8EA 3V45A 1HJZA 1ZR5A 5E3BA 1LCPA 5AILA 4ZX8A 2AFCA 2DX6A 1BLLE 1BPNA 5CMSA 5HOLA 3GQOA 3SIHA 5FSZA 4ESSA 2BFQA 3Q71A 3KZWA 3KQXA
chains in the Genus database with same CATH topology
2JZEA 2RNKA 2KQVA 2W2GA 2WCTA 2JZDA 2JZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JZE A;  2RNK A;  2KQV A;  2W2G A;  2WCT A;  2JZD A;  2JZF A; 
#chains in the Genus database with same CATH topology
 3PEI A;  4JGK A;  5FSY A;  3EWQ A;  4ZY2 A;  2WCT A;  5FSX A;  2EWB A;  5CB5 A;  2RNK A;  1BPM A;  1ZR3 A;  2KQV A;  4J5Q A;  3GPG A;  5FSV A;  2BFR A;  3EW5 A;  2EEE A;  1LAP A;  4ZX9 A;  4ZYQ A;  3EJG A;  3ETI A;  2FAV A;  3IID A;  3JRU A;  4D86 A;  3KR5 A;  2L8R A;  5FSU A;  3GPO A;  2JZF A;  2ACF A;  5HIH A;  4JLL A;  4GVV A;  2XD7 A;  2JZD A;  4R76 A;  5DUS A;  3V2B A;  2W2G A;  4GUA A;  4ZI6 A;  2VRI A;  3EWR A;  3EWP A;  1GYT A;  3EJF A;  3IIF A;  4ETJ A;  4J5S A;  1VHU A;  4IQY A;  4ABK A;  4ETK A;  4K3N A;  3Q6Z A;  2J9A A;  4TU0 A;  3H8G A;  2FXK A;  4R6T A;  3SIJ A;  4ZY0 A;  3SIG A;  4R7M A;  4X2T A;  5CBM A;  3KQZ A;  4KSI A;  4J5R A;  3GQE A;  3VFQ A;  3KR4 A;  1NJR A;  1TY8 A;  3JZT A;  3T8W A;  4ZY1 A;  3H8F A;  2X47 A;  4JVV A;  2FG1 A;  1SPV A;  4K0C A;  3SII A;  4JCA A;  2JZE A;  4UML A;  3IJ3 A;  1LAM A;  4KYB A;  4ABL A;  3EKE A;  1YD9 A;  5CB3 A;  4GVW A;  3GPQ A;  3EWO A;  1TXZ A;  5D8N A;  1LAN A;  2LGR A;  4J4Z A;  3H8E A;  3V45 A;  1HJZ A;  1ZR5 A;  5E3B A;  1LCP A;  5AIL A;  4ZX8 A;  2AFC A;  2DX6 A;  1BLL E;  1BPN A;  5CMS A;  5HOL A;  3GQO A;  3SIH A;  5FSZ A;  4ESS A;  2BFQ A;  3Q71 A;  3KZW A;  3KQX A; 
#chains in the Genus database with same CATH homology
 2JZE A;  2RNK A;  2KQV A;  2W2G A;  2WCT A;  2JZD A;  2JZF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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