The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
62
|
sequence length |
185
|
structure length |
185
|
Chain Sequence |
ADGFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation.
pubmed doi rcsb |
| molecule tags |
Gene regulation
|
| source organism |
Homo sapiens
|
| molecule keywords |
Core histone macro-H2A.1, Isoform 1
|
| total genus |
62
|
| structure length |
185
|
| sequence length |
185
|
| ec nomenclature | |
| pdb deposition date | 2009-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01661 | Macro | Macro domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Leucine Aminopeptidase, subunit E; domain 1 | Leucine Aminopeptidase, subunit E, domain 1 |
#chains in the Genus database with same CATH superfamily 3GPO A; 2VRI A; 3KZW A; 2ACF A; 3GQO A; 4J4Z A; 1TXZ A; 4ZX9 A; 1LAP A; 1ZR5 A; 2XD7 A; 4ZI6 A; 2X47 A; 5AIL A; 4ZY1 A; 1ZR3 A; 4JVV A; 3VFQ A; 5CB3 A; 3EWO A; 3Q6Z A; 4IQY A; 2FXK A; 3EJG A; 2DX6 A; 2FAV A; 3SIH A; 3T8W A; 3H8E A; 5CMS A; 1HJZ A; 5CB5 A; 1LAN A; 4ABL A; 3H8G A; 4K3N A; 3GPG A; 4J5R A; 3PEI A; 3H8F A; 4ABK A; 3KR4 A; 3V45 A; 4ZY0 A; 1BPM A; 3EW5 A; 5FSU A; 5FSV A; 1VHU A; 3EWR A; 1TY8 A; 4X2T A; 1NJR A; 3SII A; 5D8N A; 4D86 A; 3EKE A; 3KQX A; 4ZYQ A; 2BFR A; 4UML A; 1BPN A; 2L8R A; 2EWB A; 3ETI A; 2EEE A; 5HOL A; 1LCP A; 5FSZ A; 3KR5 A; 4R7M A; 2J9A A; 2LGR A; 4R76 A; 3EWQ A; 3KQZ A; 4ZY2 A; 4ETJ A; 4J5S A; 3Q71 A; 4JCA A; 3SIG A; 5CBM A; 1GYT A; 2AFC A; 5E3B A; 4ZX8 A; 4K0C A; 4GVV A; 4R6T A; 4KSI A; 4GVW A; 5FSX A; 4GUA A; 4J5Q A; 4ESS A; 3JZT A; 4KYB A; 1BLL E; 3EWP A; 3IJ3 A; 5FSY A; 4ETK A; 1LAM A; 3EJF A; 2BFQ A; 1SPV A; 2FG1 A; 3IID A; 3GPQ A; 5HIH A; 4JLL A; 3V2B A; 1YD9 A; 3JRU A; 3SIJ A; 5DUS A; 4TU0 A; 4JGK A; 3IIF A; 3GQE A; #chains in the Genus database with same CATH topology 3GPO A; 2VRI A; 3KZW A; 2ACF A; 3GQO A; 4J4Z A; 1TXZ A; 4ZX9 A; 1LAP A; 1ZR5 A; 2XD7 A; 4ZI6 A; 2X47 A; 5AIL A; 4ZY1 A; 1ZR3 A; 4JVV A; 3VFQ A; 5CB3 A; 3EWO A; 3Q6Z A; 4IQY A; 2FXK A; 3EJG A; 2DX6 A; 2JZF A; 2FAV A; 3SIH A; 2KQV A; 3T8W A; 3H8E A; 5CMS A; 1HJZ A; 5CB5 A; 1LAN A; 4ABL A; 3H8G A; 4K3N A; 3GPG A; 4J5R A; 3PEI A; 3H8F A; 4ABK A; 3KR4 A; 3V45 A; 4ZY0 A; 1BPM A; 3EW5 A; 5FSU A; 5FSV A; 1VHU A; 3EWR A; 1TY8 A; 4X2T A; 1NJR A; 2JZE A; 3SII A; 5D8N A; 4D86 A; 3EKE A; 3KQX A; 4ZYQ A; 2BFR A; 4UML A; 1BPN A; 2L8R A; 2EWB A; 3ETI A; 2EEE A; 5HOL A; 1LCP A; 5FSZ A; 3KR5 A; 4R7M A; 2WCT A; 2J9A A; 2LGR A; 4R76 A; 3EWQ A; 3KQZ A; 4ZY2 A; 4ETJ A; 4J5S A; 3Q71 A; 4JCA A; 3SIG A; 5CBM A; 1GYT A; 2AFC A; 5E3B A; 4ZX8 A; 4K0C A; 4GVV A; 2JZD A; 4R6T A; 4KSI A; 4GVW A; 5FSX A; 4GUA A; 4J5Q A; 4ESS A; 3JZT A; 4KYB A; 1BLL E; 3EWP A; 3IJ3 A; 5FSY A; 2W2G A; 4ETK A; 1LAM A; 3EJF A; 2BFQ A; 1SPV A; 2FG1 A; 3IID A; 3GPQ A; 5HIH A; 4JLL A; 3V2B A; 1YD9 A; 2RNK A; 3JRU A; 3SIJ A; 5DUS A; 4TU0 A; 4JGK A; 3IIF A; 3GQE A; #chains in the Genus database with same CATH homology 3GPO A; 2VRI A; 3KZW A; 2ACF A; 3GQO A; 4J4Z A; 1TXZ A; 4ZX9 A; 1LAP A; 1ZR5 A; 2XD7 A; 4ZI6 A; 2X47 A; 5AIL A; 4ZY1 A; 1ZR3 A; 4JVV A; 3VFQ A; 5CB3 A; 3EWO A; 3Q6Z A; 4IQY A; 2FXK A; 3EJG A; 2DX6 A; 2FAV A; 3SIH A; 3T8W A; 3H8E A; 5CMS A; 1HJZ A; 5CB5 A; 1LAN A; 4ABL A; 3H8G A; 4K3N A; 3GPG A; 4J5R A; 3PEI A; 3H8F A; 4ABK A; 3KR4 A; 3V45 A; 4ZY0 A; 1BPM A; 3EW5 A; 5FSU A; 5FSV A; 1VHU A; 3EWR A; 1TY8 A; 4X2T A; 1NJR A; 3SII A; 5D8N A; 4D86 A; 3EKE A; 3KQX A; 4ZYQ A; 2BFR A; 4UML A; 1BPN A; 2L8R A; 2EWB A; 3ETI A; 2EEE A; 5HOL A; 1LCP A; 5FSZ A; 3KR5 A; 4R7M A; 2J9A A; 2LGR A; 4R76 A; 3EWQ A; 3KQZ A; 4ZY2 A; 4ETJ A; 4J5S A; 3Q71 A; 4JCA A; 3SIG A; 5CBM A; 1GYT A; 2AFC A; 5E3B A; 4ZX8 A; 4K0C A; 4GVV A; 4R6T A; 4KSI A; 4GVW A; 5FSX A; 4GUA A; 4J5Q A; 4ESS A; 3JZT A; 4KYB A; 1BLL E; 3EWP A; 3IJ3 A; 5FSY A; 4ETK A; 1LAM A; 3EJF A; 2BFQ A; 1SPV A; 2FG1 A; 3IID A; 3GPQ A; 5HIH A; 4JLL A; 3V2B A; 1YD9 A; 3JRU A; 3SIJ A; 5DUS A; 4TU0 A; 4JGK A; 3IIF A; 3GQE A;
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