The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
89
|
Knots found |
|
sequence length |
274
|
structure length |
265
|
Chain Sequence |
RHSRRAIAAETVEILERGRYTAPSGRVVPIADHVAQAVRGTRLYRPEKLAVLLEGTRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEAGLARSSGLYASLRAVPQFYAFHHRQRDPLYSDHLIYSPGVPVFRDDAGRLLEEPYRVAFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFAHVVFAVWDTAPGAPRHAAFARRF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The structure and catalytic mechanism of a poly(ADP-ribose) glycohydrolase.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Thermomonospora curvata
|
| molecule keywords |
poly(ADP-ribose) glycohydrolase
|
| total genus |
89
|
| structure length |
265
|
| sequence length |
274
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature |
ec
3.2.1.143: Poly(ADP-ribose) glycohydrolase. |
| pdb deposition date | 2011-06-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10021 | DUF2263 | Uncharacterized protein conserved in bacteria (DUF2263) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Leucine Aminopeptidase, subunit E; domain 1 | Leucine Aminopeptidase, subunit E, domain 1 |
#chains in the Genus database with same CATH superfamily 4X2T A; 1LAM A; 4J5S A; 1ZR5 A; 5CB5 A; 3EJG A; 1LAP A; 2ACF A; 3EWO A; 5FSX A; 2FXK A; 3EW5 A; 3V2B A; 3GQE A; 1BPN A; 2XD7 A; 2LGR A; 4JCA A; 5D8N A; 3IIF A; 3KQX A; 3SII A; 5FSU A; 4JLL A; 5AIL A; 3Q71 A; 3GPO A; 4ETJ A; 3GPQ A; 3VFQ A; 4JGK A; 2FG1 A; 4K3N A; 4ZX9 A; 1YD9 A; 4ETK A; 3SIG A; 2L8R A; 1BPM A; 3EWR A; 4ABL A; 1ZR3 A; 2EWB A; 3Q6Z A; 5CMS A; 5HIH A; 4ZY2 A; 2AFC A; 4ESS A; 3SIJ A; 1NJR A; 3H8F A; 3JZT A; 5DUS A; 3KQZ A; 4K0C A; 4ABK A; 5HOL A; 2BFQ A; 3SIH A; 1TXZ A; 4ZX8 A; 3PEI A; 5FSV A; 4TU0 A; 4ZI6 A; 4KYB A; 1TY8 A; 2BFR A; 4IQY A; 1SPV A; 4UML A; 5CBM A; 3ETI A; 3IJ3 A; 4ZY1 A; 3EWP A; 4GUA A; 4GVW A; 3H8G A; 2DX6 A; 1GYT A; 4KSI A; 3IID A; 3KR5 A; 1BLL E; 3JRU A; 4GVV A; 2FAV A; 4R6T A; 5CB3 A; 1VHU A; 2X47 A; 3GQO A; 1HJZ A; 3EWQ A; 1LAN A; 4ZY0 A; 5FSZ A; 4J5Q A; 5FSY A; 4J5R A; 4JVV A; 4ZYQ A; 1LCP A; 2VRI A; 5E3B A; 3T8W A; 3KR4 A; 2EEE A; 3EKE A; 4D86 A; 3KZW A; 3GPG A; 2J9A A; 3V45 A; 4R7M A; 4R76 A; 3H8E A; 4J4Z A; 3EJF A; #chains in the Genus database with same CATH topology 4X2T A; 1LAM A; 4J5S A; 1ZR5 A; 2JZD A; 5CB5 A; 3EJG A; 2KQV A; 2W2G A; 1LAP A; 2ACF A; 3EWO A; 5FSX A; 2FXK A; 2RNK A; 3EW5 A; 3V2B A; 3GQE A; 1BPN A; 2XD7 A; 2LGR A; 4JCA A; 5D8N A; 3IIF A; 2WCT A; 3KQX A; 3SII A; 5FSU A; 4JLL A; 5AIL A; 3Q71 A; 3GPO A; 4ETJ A; 3GPQ A; 3VFQ A; 4JGK A; 2JZF A; 2FG1 A; 4K3N A; 4ZX9 A; 1YD9 A; 4ETK A; 3SIG A; 2JZE A; 2L8R A; 1BPM A; 3EWR A; 4ABL A; 1ZR3 A; 2EWB A; 3Q6Z A; 5CMS A; 5HIH A; 4ZY2 A; 2AFC A; 4ESS A; 3SIJ A; 1NJR A; 3H8F A; 3JZT A; 5DUS A; 3KQZ A; 4K0C A; 4ABK A; 5HOL A; 2BFQ A; 3SIH A; 1TXZ A; 4ZX8 A; 3PEI A; 5FSV A; 4TU0 A; 4ZI6 A; 4KYB A; 1TY8 A; 2BFR A; 4IQY A; 1SPV A; 4UML A; 5CBM A; 3ETI A; 3IJ3 A; 4ZY1 A; 3EWP A; 4GUA A; 4GVW A; 3H8G A; 2DX6 A; 1GYT A; 4KSI A; 3IID A; 3KR5 A; 1BLL E; 3JRU A; 4GVV A; 2FAV A; 4R6T A; 5CB3 A; 1VHU A; 2X47 A; 3GQO A; 1HJZ A; 3EWQ A; 1LAN A; 4ZY0 A; 5FSZ A; 4J5Q A; 5FSY A; 4J5R A; 4JVV A; 4ZYQ A; 1LCP A; 2VRI A; 5E3B A; 3T8W A; 3KR4 A; 2EEE A; 3EKE A; 4D86 A; 3KZW A; 3GPG A; 2J9A A; 3V45 A; 4R7M A; 4R76 A; 3H8E A; 4J4Z A; 3EJF A; #chains in the Genus database with same CATH homology 4X2T A; 1LAM A; 4J5S A; 1ZR5 A; 5CB5 A; 3EJG A; 1LAP A; 2ACF A; 3EWO A; 5FSX A; 2FXK A; 3EW5 A; 3V2B A; 3GQE A; 1BPN A; 2XD7 A; 2LGR A; 4JCA A; 5D8N A; 3IIF A; 3KQX A; 3SII A; 5FSU A; 4JLL A; 5AIL A; 3Q71 A; 3GPO A; 4ETJ A; 3GPQ A; 3VFQ A; 4JGK A; 2FG1 A; 4K3N A; 4ZX9 A; 1YD9 A; 4ETK A; 3SIG A; 2L8R A; 1BPM A; 3EWR A; 4ABL A; 1ZR3 A; 2EWB A; 3Q6Z A; 5CMS A; 5HIH A; 4ZY2 A; 2AFC A; 4ESS A; 3SIJ A; 1NJR A; 3H8F A; 3JZT A; 5DUS A; 3KQZ A; 4K0C A; 4ABK A; 5HOL A; 2BFQ A; 3SIH A; 1TXZ A; 4ZX8 A; 3PEI A; 5FSV A; 4TU0 A; 4ZI6 A; 4KYB A; 1TY8 A; 2BFR A; 4IQY A; 1SPV A; 4UML A; 5CBM A; 3ETI A; 3IJ3 A; 4ZY1 A; 3EWP A; 4GUA A; 4GVW A; 3H8G A; 2DX6 A; 1GYT A; 4KSI A; 3IID A; 3KR5 A; 1BLL E; 3JRU A; 4GVV A; 2FAV A; 4R6T A; 5CB3 A; 1VHU A; 2X47 A; 3GQO A; 1HJZ A; 3EWQ A; 1LAN A; 4ZY0 A; 5FSZ A; 4J5Q A; 5FSY A; 4J5R A; 4JVV A; 4ZYQ A; 1LCP A; 2VRI A; 5E3B A; 3T8W A; 3KR4 A; 2EEE A; 3EKE A; 4D86 A; 3KZW A; 3GPG A; 2J9A A; 3V45 A; 4R7M A; 4R76 A; 3H8E A; 4J4Z A; 3EJF A;
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