The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
158
|
structure length |
157
|
Chain Sequence |
ARIRHVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFTSWGAWVGGLPAEAVHRVMGEEIKKAPDTLEVTGVHGTEKAEAYRRAS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Design of activated serine-containing catalytic triads with atomic-level accuracy.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Synthetic construct
|
| molecule keywords |
evolved variant of the computationally designed serine hydro
|
| total genus |
50
|
| structure length |
157
|
| sequence length |
158
|
| ec nomenclature | |
| pdb deposition date | 2013-03-26 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Leucine Aminopeptidase, subunit E; domain 1 | Leucine Aminopeptidase, subunit E, domain 1 |
#chains in the Genus database with same CATH superfamily 3GPO A; 2VRI A; 3KZW A; 2ACF A; 3GQO A; 4J4Z A; 1TXZ A; 4ZX9 A; 1LAP A; 1ZR5 A; 2XD7 A; 4ZI6 A; 2X47 A; 5AIL A; 4ZY1 A; 1ZR3 A; 4JVV A; 3VFQ A; 5CB3 A; 3EWO A; 3Q6Z A; 4IQY A; 2FXK A; 3EJG A; 2DX6 A; 2FAV A; 3SIH A; 3T8W A; 3H8E A; 5CMS A; 1HJZ A; 5CB5 A; 1LAN A; 4ABL A; 3H8G A; 4K3N A; 3GPG A; 4J5R A; 3PEI A; 3H8F A; 4ABK A; 3KR4 A; 3V45 A; 4ZY0 A; 1BPM A; 3EW5 A; 5FSU A; 5FSV A; 1VHU A; 3EWR A; 1TY8 A; 4X2T A; 1NJR A; 3SII A; 5D8N A; 4D86 A; 3EKE A; 3KQX A; 4ZYQ A; 2BFR A; 4UML A; 1BPN A; 2L8R A; 2EWB A; 3ETI A; 2EEE A; 5HOL A; 1LCP A; 5FSZ A; 3KR5 A; 4R7M A; 2J9A A; 2LGR A; 4R76 A; 3EWQ A; 3KQZ A; 4ZY2 A; 4ETJ A; 4J5S A; 3Q71 A; 4JCA A; 3SIG A; 5CBM A; 1GYT A; 2AFC A; 5E3B A; 4ZX8 A; 4K0C A; 4GVV A; 4R6T A; 4KSI A; 4GVW A; 5FSX A; 4GUA A; 4J5Q A; 4ESS A; 3JZT A; 4KYB A; 1BLL E; 3EWP A; 3IJ3 A; 5FSY A; 4ETK A; 1LAM A; 3EJF A; 2BFQ A; 1SPV A; 2FG1 A; 3IID A; 3GPQ A; 5HIH A; 4JLL A; 3V2B A; 1YD9 A; 3JRU A; 3SIJ A; 5DUS A; 4TU0 A; 4JGK A; 3IIF A; 3GQE A; #chains in the Genus database with same CATH topology 3GPO A; 2VRI A; 3KZW A; 2ACF A; 3GQO A; 4J4Z A; 1TXZ A; 4ZX9 A; 1LAP A; 1ZR5 A; 2XD7 A; 4ZI6 A; 2X47 A; 5AIL A; 4ZY1 A; 1ZR3 A; 4JVV A; 3VFQ A; 5CB3 A; 3EWO A; 3Q6Z A; 4IQY A; 2FXK A; 3EJG A; 2DX6 A; 2JZF A; 2FAV A; 3SIH A; 2KQV A; 3T8W A; 3H8E A; 5CMS A; 1HJZ A; 5CB5 A; 1LAN A; 4ABL A; 3H8G A; 4K3N A; 3GPG A; 4J5R A; 3PEI A; 3H8F A; 4ABK A; 3KR4 A; 3V45 A; 4ZY0 A; 1BPM A; 3EW5 A; 5FSU A; 5FSV A; 1VHU A; 3EWR A; 1TY8 A; 4X2T A; 1NJR A; 2JZE A; 3SII A; 5D8N A; 4D86 A; 3EKE A; 3KQX A; 4ZYQ A; 2BFR A; 4UML A; 1BPN A; 2L8R A; 2EWB A; 3ETI A; 2EEE A; 5HOL A; 1LCP A; 5FSZ A; 3KR5 A; 4R7M A; 2WCT A; 2J9A A; 2LGR A; 4R76 A; 3EWQ A; 3KQZ A; 4ZY2 A; 4ETJ A; 4J5S A; 3Q71 A; 4JCA A; 3SIG A; 5CBM A; 1GYT A; 2AFC A; 5E3B A; 4ZX8 A; 4K0C A; 4GVV A; 2JZD A; 4R6T A; 4KSI A; 4GVW A; 5FSX A; 4GUA A; 4J5Q A; 4ESS A; 3JZT A; 4KYB A; 1BLL E; 3EWP A; 3IJ3 A; 5FSY A; 2W2G A; 4ETK A; 1LAM A; 3EJF A; 2BFQ A; 1SPV A; 2FG1 A; 3IID A; 3GPQ A; 5HIH A; 4JLL A; 3V2B A; 1YD9 A; 2RNK A; 3JRU A; 3SIJ A; 5DUS A; 4TU0 A; 4JGK A; 3IIF A; 3GQE A; #chains in the Genus database with same CATH homology 3GPO A; 2VRI A; 3KZW A; 2ACF A; 3GQO A; 4J4Z A; 1TXZ A; 4ZX9 A; 1LAP A; 1ZR5 A; 2XD7 A; 4ZI6 A; 2X47 A; 5AIL A; 4ZY1 A; 1ZR3 A; 4JVV A; 3VFQ A; 5CB3 A; 3EWO A; 3Q6Z A; 4IQY A; 2FXK A; 3EJG A; 2DX6 A; 2FAV A; 3SIH A; 3T8W A; 3H8E A; 5CMS A; 1HJZ A; 5CB5 A; 1LAN A; 4ABL A; 3H8G A; 4K3N A; 3GPG A; 4J5R A; 3PEI A; 3H8F A; 4ABK A; 3KR4 A; 3V45 A; 4ZY0 A; 1BPM A; 3EW5 A; 5FSU A; 5FSV A; 1VHU A; 3EWR A; 1TY8 A; 4X2T A; 1NJR A; 3SII A; 5D8N A; 4D86 A; 3EKE A; 3KQX A; 4ZYQ A; 2BFR A; 4UML A; 1BPN A; 2L8R A; 2EWB A; 3ETI A; 2EEE A; 5HOL A; 1LCP A; 5FSZ A; 3KR5 A; 4R7M A; 2J9A A; 2LGR A; 4R76 A; 3EWQ A; 3KQZ A; 4ZY2 A; 4ETJ A; 4J5S A; 3Q71 A; 4JCA A; 3SIG A; 5CBM A; 1GYT A; 2AFC A; 5E3B A; 4ZX8 A; 4K0C A; 4GVV A; 4R6T A; 4KSI A; 4GVW A; 5FSX A; 4GUA A; 4J5Q A; 4ESS A; 3JZT A; 4KYB A; 1BLL E; 3EWP A; 3IJ3 A; 5FSY A; 4ETK A; 1LAM A; 3EJF A; 2BFQ A; 1SPV A; 2FG1 A; 3IID A; 3GPQ A; 5HIH A; 4JLL A; 3V2B A; 1YD9 A; 3JRU A; 3SIJ A; 5DUS A; 4TU0 A; 4JGK A; 3IIF A; 3GQE A;
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