1UAMA

Crystal structure of trna(m1g37)methyltransferase: insight into trna recognition
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
Knots found
sequence length
252
structure length
250
Chain Sequence
SHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNSLEHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of tRNA(m(1)G37)methyltransferase: insights into tRNA recognition
pubmed doi rcsb
molecule tags Transferase
source organism Haemophilus influenzae
molecule keywords tRNA (Guanine-N(1)-)-methyltransferase
total genus 74
structure length 250
sequence length 252
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2003-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 1uamA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1uamA01
3L8UA 4RG1A 4XBOA 4YVGA 2O3AA 4YVKA 4YQTA 5GMCA 4YQ5A 1NS5A 4YQ0A 1V2XA 2CX8A 3N4JA 4J3CA 2YY8A 3E5YA 2Z0YA 1VHKA 4X3LA 1MXIA 1X7OA 4KGNA 1V6ZA 3AIAA 3OIIA 5GM8A 1UAMA 3O7BA 5FAIA 4YQDA 4YQIA 4YQ3A 2EGWA 4YPZA 4YQOA 3QUVA 1VHYA 4YVIA 3KW2A 3ONPA 1ZJRA 4CNFA 1VH0A 4YPYA 5CO4A 3DCMX 4CNEA 4X3MA 4YPXA 2V3JA 4YQ9A 4YQNA 4YQKA 3N4KA 4YQGA 4MCBA 3AI9X 4YVHA 4YQ4A 4MCDA 4PZKA 3BBHA 2EGVA 3OINA 4YQLA 1UAJA 3GYQA 4YQAA 4E8BA 1UALA 4YQBA 1IPAA 4YQRA 5D9FA 3BBEA 4CNGA 3AXZA 3IC6A 1X7PA 1NXZA 4YQ8A 4YQ6A 4YQPA 2HA8A 4JAKA 4YPWA 4KDZA 4FAKA 2QWVA 3OIJA 1P9PA 2V3KA 1UAKA 4CNDA 1O6DA 1GZ0A 1TO0A 1Z85A 3NK7A 4H3YA 3BBDA 1J85A 3IEFA 4YQQA 3ILKA 4MCCA 3KNUA 4H3ZA 3KTYA 5GMBA 4YVJA 3NK6A 4YQ7A 4YQ2A 4JALA 1K3RA 4L69A 4YQCA 4YQJA 2QMMA 2I6DA 4IG6A 4YQ1A 1OY5A 3KY7A 4YQSA
chains in the Genus database with same CATH superfamily
3L8UA 4RG1A 4XBOA 4YVGA 1WRTR 4YVKA 2O3AA 1CO0A 4YQTA 4FMWA 5GMCA 4YQ5A 1NS5A 4YQ0A 1V2XA 2CX8A 3N4JA 4J3CA 2YY8A 3E5YA 2Z0YA 1VHKA 4X3LA 1MXIA 1X7OA 4KGNA 1V6ZA 4JWJA 3AIAA 3OIIA 5GM8A 1UAMA 3O7BA 5FAIA 4YQDA 4YQIA 4YQ3A 2EGWA 4YPZA 4YQOA 3QUVA 1RCSA 1VHYA 4YVIA 3KW2A 3ONPA 1WRSR 1ZJRA 4CNFA 3SSXN 1VH0A 3KORA 4YPYA 5CO4A 3DCMX 4CNEA 4X3MA 4JWFA 4YPXA 2V3JA 4YQ9A 4YQNA 4YQKA 3N4KA 2XDIA 1JHGA 4YQGA 4MCBA 3AI9X 4YVHA 4YQ4A 4MCDA 4PZKA 1WRPR 3FRWA 4JWGA 3BBHA 2EGVA 3OINA 4YQLA 1UAJA 3GYQA 4YQAA 4E8BA 1UALA 4YQBA 1IPAA 4YQRA 5D9FA 3BBEA 4CNGA 3AXZA 2OZ9R 3IC6A 1X7PA 1NXZA 4YQ8A 3G1CA 4YQ6A 4YQPA 2HA8A 4JAKA 4YPWA 4KDZA 4FAKA 2QWVA 3OIJA 1P9PA 2V3KA 1UAKA 4CNDA 1O6DA 1GZ0A 1TO0A 1Z85A 3NK7A 1MI7R 4H3YA 3BBDA 1J85A 3IEFA 4YQQA 3SSWN 1TRRA 3ILKA 4MCCA 4JWHA 3KNUA 4H3ZA 1ZT9A 3KTYA 5GMBA 3WRPA 4YVJA 3NK6A 4YQ7A 4YQ2A 4JALA 1K3RA 4L69A 4YQCA 4YQJA 2QMMA 2I6DA 4IG6A 4YQ1A 1TROA 1OY5A 3KY7A 4YQSA
chains in the Genus database with same CATH topology
3L8UA 4RG1A 4XBOA 4YVGA 2O3AA 4YVKA 4FMWA 4YQTA 5GMCA 4YQ5A 1NS5A 4YQ0A 1V2XA 2CX8A 3N4JA 4J3CA 2YY8A 3E5YA 2Z0YA 1VHKA 4X3LA 1MXIA 1X7OA 4KGNA 1V6ZA 4JWJA 3AIAA 3OIIA 5GM8A 1UAMA 3O7BA 5FAIA 4YQDA 4YQIA 4YQ3A 2EGWA 4YPZA 4YQOA 3QUVA 1VHYA 4YVIA 3KW2A 3ONPA 1ZJRA 4CNFA 1VH0A 4YPYA 5CO4A 3DCMX 4CNEA 4X3MA 4JWFA 4YPXA 2V3JA 4YQ9A 4YQNA 4YQKA 3N4KA 4YQGA 4MCBA 3AI9X 4YVHA 4YQ4A 4MCDA 4PZKA 4JWGA 3BBHA 2EGVA 3OINA 4YQLA 1UAJA 3GYQA 4YQAA 4E8BA 1UALA 4YQBA 1IPAA 4YQRA 5D9FA 3BBEA 4CNGA 3AXZA 3IC6A 1X7PA 1NXZA 4YQ8A 4YQ6A 4YQPA 2HA8A 4JAKA 4YPWA 4KDZA 4FAKA 2QWVA 3OIJA 1P9PA 2V3KA 1UAKA 4CNDA 1O6DA 1GZ0A 1TO0A 1Z85A 3NK7A 4H3YA 3BBDA 1J85A 3IEFA 4YQQA 3ILKA 4MCCA 4JWHA 3KNUA 4H3ZA 3KTYA 5GMBA 4YVJA 3NK6A 4YQ7A 4YQ2A 4JALA 1K3RA 4L69A 4YQCA 4YQJA 2QMMA 2I6DA 4IG6A 4YQ1A 1OY5A 3KY7A 4YQSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L8U A;  4RG1 A;  4XBO A;  4YVG A;  2O3A A;  4YVK A;  4YQT A;  5GMC A;  4YQ5 A;  1NS5 A;  4YQ0 A;  1V2X A;  2CX8 A;  3N4J A;  4J3C A;  2YY8 A;  3E5Y A;  2Z0Y A;  1VHK A;  4X3L A;  1MXI A;  1X7O A;  4KGN A;  1V6Z A;  3AIA A;  3OII A;  5GM8 A;  1UAM A;  3O7B A;  5FAI A;  4YQD A;  4YQI A;  4YQ3 A;  2EGW A;  4YPZ A;  4YQO A;  3QUV A;  1VHY A;  4YVI A;  3KW2 A;  3ONP A;  1ZJR A;  4CNF A;  1VH0 A;  4YPY A;  5CO4 A;  3DCM X;  4CNE A;  4X3M A;  4YPX A;  2V3J A;  4YQ9 A;  4YQN A;  4YQK A;  3N4K A;  4YQG A;  4MCB A;  3AI9 X;  4YVH A;  4YQ4 A;  4MCD A;  4PZK A;  3BBH A;  2EGV A;  3OIN A;  4YQL A;  1UAJ A;  3GYQ A;  4YQA A;  4E8B A;  1UAL A;  4YQB A;  1IPA A;  4YQR A;  5D9F A;  3BBE A;  4CNG A;  3AXZ A;  3IC6 A;  1X7P A;  1NXZ A;  4YQ8 A;  4YQ6 A;  4YQP A;  2HA8 A;  4JAK A;  4YPW A;  4KDZ A;  4FAK A;  2QWV A;  3OIJ A;  1P9P A;  2V3K A;  1UAK A;  4CND A;  1O6D A;  1GZ0 A;  1TO0 A;  1Z85 A;  3NK7 A;  4H3Y A;  3BBD A;  1J85 A;  3IEF A;  4YQQ A;  3ILK A;  4MCC A;  3KNU A;  4H3Z A;  3KTY A;  5GMB A;  4YVJ A;  3NK6 A;  4YQ7 A;  4YQ2 A;  4JAL A;  1K3R A;  4L69 A;  4YQC A;  4YQJ A;  2QMM A;  2I6D A;  4IG6 A;  4YQ1 A;  1OY5 A;  3KY7 A;  4YQS A; 
#chains in the Genus database with same CATH topology
 3L8U A;  4RG1 A;  4XBO A;  4YVG A;  1WRT R;  4YVK A;  2O3A A;  1CO0 A;  4YQT A;  4FMW A;  5GMC A;  4YQ5 A;  1NS5 A;  4YQ0 A;  1V2X A;  2CX8 A;  3N4J A;  4J3C A;  2YY8 A;  3E5Y A;  2Z0Y A;  1VHK A;  4X3L A;  1MXI A;  1X7O A;  4KGN A;  1V6Z A;  4JWJ A;  3AIA A;  3OII A;  5GM8 A;  1UAM A;  3O7B A;  5FAI A;  4YQD A;  4YQI A;  4YQ3 A;  2EGW A;  4YPZ A;  4YQO A;  3QUV A;  1RCS A;  1VHY A;  4YVI A;  3KW2 A;  3ONP A;  1WRS R;  1ZJR A;  4CNF A;  3SSX N;  1VH0 A;  3KOR A;  4YPY A;  5CO4 A;  3DCM X;  4CNE A;  4X3M A;  4JWF A;  4YPX A;  2V3J A;  4YQ9 A;  4YQN A;  4YQK A;  3N4K A;  2XDI A;  1JHG A;  4YQG A;  4MCB A;  3AI9 X;  4YVH A;  4YQ4 A;  4MCD A;  4PZK A;  1WRP R;  3FRW A;  4JWG A;  3BBH A;  2EGV A;  3OIN A;  4YQL A;  1UAJ A;  3GYQ A;  4YQA A;  4E8B A;  1UAL A;  4YQB A;  1IPA A;  4YQR A;  5D9F A;  3BBE A;  4CNG A;  3AXZ A;  2OZ9 R;  3IC6 A;  1X7P A;  1NXZ A;  4YQ8 A;  3G1C A;  4YQ6 A;  4YQP A;  2HA8 A;  4JAK A;  4YPW A;  4KDZ A;  4FAK A;  2QWV A;  3OIJ A;  1P9P A;  2V3K A;  1UAK A;  4CND A;  1O6D A;  1GZ0 A;  1TO0 A;  1Z85 A;  3NK7 A;  1MI7 R;  4H3Y A;  3BBD A;  1J85 A;  3IEF A;  4YQQ A;  3SSW N;  1TRR A;  3ILK A;  4MCC A;  4JWH A;  3KNU A;  4H3Z A;  1ZT9 A;  3KTY A;  5GMB A;  3WRP A;  4YVJ A;  3NK6 A;  4YQ7 A;  4YQ2 A;  4JAL A;  1K3R A;  4L69 A;  4YQC A;  4YQJ A;  2QMM A;  2I6D A;  4IG6 A;  4YQ1 A;  1TRO A;  1OY5 A;  3KY7 A;  4YQS A; 
#chains in the Genus database with same CATH homology
 3L8U A;  4RG1 A;  4XBO A;  4YVG A;  2O3A A;  4YVK A;  4FMW A;  4YQT A;  5GMC A;  4YQ5 A;  1NS5 A;  4YQ0 A;  1V2X A;  2CX8 A;  3N4J A;  4J3C A;  2YY8 A;  3E5Y A;  2Z0Y A;  1VHK A;  4X3L A;  1MXI A;  1X7O A;  4KGN A;  1V6Z A;  4JWJ A;  3AIA A;  3OII A;  5GM8 A;  1UAM A;  3O7B A;  5FAI A;  4YQD A;  4YQI A;  4YQ3 A;  2EGW A;  4YPZ A;  4YQO A;  3QUV A;  1VHY A;  4YVI A;  3KW2 A;  3ONP A;  1ZJR A;  4CNF A;  1VH0 A;  4YPY A;  5CO4 A;  3DCM X;  4CNE A;  4X3M A;  4JWF A;  4YPX A;  2V3J A;  4YQ9 A;  4YQN A;  4YQK A;  3N4K A;  4YQG A;  4MCB A;  3AI9 X;  4YVH A;  4YQ4 A;  4MCD A;  4PZK A;  4JWG A;  3BBH A;  2EGV A;  3OIN A;  4YQL A;  1UAJ A;  3GYQ A;  4YQA A;  4E8B A;  1UAL A;  4YQB A;  1IPA A;  4YQR A;  5D9F A;  3BBE A;  4CNG A;  3AXZ A;  3IC6 A;  1X7P A;  1NXZ A;  4YQ8 A;  4YQ6 A;  4YQP A;  2HA8 A;  4JAK A;  4YPW A;  4KDZ A;  4FAK A;  2QWV A;  3OIJ A;  1P9P A;  2V3K A;  1UAK A;  4CND A;  1O6D A;  1GZ0 A;  1TO0 A;  1Z85 A;  3NK7 A;  4H3Y A;  3BBD A;  1J85 A;  3IEF A;  4YQQ A;  3ILK A;  4MCC A;  4JWH A;  3KNU A;  4H3Z A;  3KTY A;  5GMB A;  4YVJ A;  3NK6 A;  4YQ7 A;  4YQ2 A;  4JAL A;  1K3R A;  4L69 A;  4YQC A;  4YQJ A;  2QMM A;  2I6D A;  4IG6 A;  4YQ1 A;  1OY5 A;  3KY7 A;  4YQS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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