The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
77
|
Knots found |
|
sequence length |
255
|
structure length |
255
|
Chain Sequence |
SMQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDASK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Burkholderia phymatum
|
| molecule keywords |
tRNA (guanine-N(1)-)-methyltransferase
|
| total genus |
77
|
| structure length |
255
|
| sequence length |
255
|
| chains with identical sequence |
B
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature |
ec
2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase. |
| pdb deposition date | 2012-09-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01746 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Trp Operon Repressor; Chain A | tRNA(m1g37)methyltransferase, domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the Genus database with same CATH superfamily 2QWV A; 5D9F A; 1O6D A; 2I6D A; 2V3K A; 4CNG A; 4E8B A; 4IG6 A; 4YQT A; 3O7B A; 4YQ1 A; 1ZJR A; 3ILK A; 4YPX A; 4X3M A; 3AI9 X; 4PZK A; 2YY8 A; 3BBE A; 4YQ6 A; 5GMB A; 4YQC A; 4FAK A; 4MCC A; 4YQR A; 3E5Y A; 4YQI A; 4YQL A; 3KNU A; 4YQG A; 4RG1 A; 4CNF A; 1UAL A; 4YQ4 A; 3QUV A; 4JAK A; 4YQS A; 3NK7 A; 4YVJ A; 4YQA A; 3KTY A; 3BBH A; 3DCM X; 1TO0 A; 2O3A A; 2HA8 A; 5GMC A; 3N4K A; 2V3J A; 4H3Y A; 4YVG A; 4YQK A; 4H3Z A; 2CX8 A; 1V2X A; 1V6Z A; 1X7O A; 3KY7 A; 4YQ0 A; 4YQ5 A; 1J85 A; 1VH0 A; 4JAL A; 1MXI A; 5FAI A; 4YPW A; 4YQB A; 2EGV A; 4YQJ A; 3AXZ A; 5CO4 A; 3IC6 A; 5GM8 A; 4KGN A; 1UAM A; 1P9P A; 4L69 A; 4YQ9 A; 1X7P A; 3N4J A; 1VHY A; 2Z0Y A; 3OIN A; 4YVI A; 2QMM A; 4CNE A; 2EGW A; 4YPZ A; 1OY5 A; 4YQQ A; 4XBO A; 4YQD A; 1UAK A; 3OII A; 4YQ3 A; 3KW2 A; 4KDZ A; 3OIJ A; 3GYQ A; 4YQ7 A; 3ONP A; 4YVK A; 3BBD A; 3NK6 A; 3IEF A; 1GZ0 A; 4X3L A; 4YQ8 A; 4YQP A; 1NS5 A; 1UAJ A; 4YQO A; 1VHK A; 3L8U A; 1NXZ A; 4CND A; 1IPA A; 4YPY A; 4MCB A; 1K3R A; 3AIA A; 4YQN A; 4MCD A; 4J3C A; 4YQ2 A; 1Z85 A; 4YVH A; #chains in the Genus database with same CATH topology 2QWV A; 5D9F A; 1O6D A; 1ZT9 A; 2I6D A; 2V3K A; 1MI7 R; 4CNG A; 4E8B A; 4IG6 A; 4YQT A; 3FRW A; 4YQ1 A; 3O7B A; 1ZJR A; 3ILK A; 4YPX A; 4X3M A; 3AI9 X; 4PZK A; 2YY8 A; 3BBE A; 4YQ6 A; 5GMB A; 4YQC A; 4FAK A; 4MCC A; 3SSW N; 4YQR A; 3E5Y A; 4YQI A; 4YQL A; 3KNU A; 4YQG A; 4RG1 A; 4CNF A; 1UAL A; 4YQ4 A; 3QUV A; 4JAK A; 4YQS A; 3NK7 A; 4YVJ A; 4YQA A; 3KTY A; 3BBH A; 3DCM X; 1TO0 A; 2O3A A; 2HA8 A; 4JWJ A; 5GMC A; 3N4K A; 4JWF A; 2V3J A; 4H3Y A; 4YVG A; 4YQK A; 3G1C A; 4H3Z A; 2CX8 A; 1V2X A; 1V6Z A; 1X7O A; 3KY7 A; 4YQ0 A; 2XDI A; 4YQ5 A; 1J85 A; 1VH0 A; 4JAL A; 1MXI A; 5FAI A; 4YPW A; 4YQB A; 2EGV A; 4YQJ A; 3AXZ A; 5CO4 A; 1TRO A; 3IC6 A; 5GM8 A; 4KGN A; 1UAM A; 1P9P A; 4L69 A; 4YQ9 A; 1X7P A; 1WRS R; 3N4J A; 1VHY A; 2Z0Y A; 3OIN A; 4YVI A; 1RCS A; 2QMM A; 4CNE A; 1Z85 A; 1WRT R; 2EGW A; 4YPZ A; 1OY5 A; 4YQQ A; 4XBO A; 4YQD A; 1UAK A; 1WRP R; 2OZ9 R; 3OII A; 4YQ3 A; 3KOR A; 3KW2 A; 4KDZ A; 3OIJ A; 4JWG A; 3GYQ A; 4YQ7 A; 3ONP A; 4YVK A; 3BBD A; 4JWH A; 1CO0 A; 3WRP A; 3NK6 A; 3IEF A; 1GZ0 A; 4X3L A; 4YQ8 A; 4YQP A; 1NS5 A; 1UAJ A; 4YQO A; 1VHK A; 3L8U A; 4FMW A; 1NXZ A; 4CND A; 1IPA A; 3SSX N; 4YPY A; 4MCB A; 1K3R A; 1TRR A; 3AIA A; 4YQN A; 4MCD A; 4J3C A; 4YQ2 A; 1JHG A; 4YVH A; #chains in the Genus database with same CATH homology 2QWV A; 5D9F A; 1O6D A; 2I6D A; 2V3K A; 4CNG A; 4E8B A; 4IG6 A; 4YQT A; 3O7B A; 4YQ1 A; 1ZJR A; 3ILK A; 4YPX A; 4X3M A; 3AI9 X; 4PZK A; 2YY8 A; 3BBE A; 4YQ6 A; 5GMB A; 4YQC A; 4FAK A; 4MCC A; 4YQR A; 3E5Y A; 4YQI A; 4YQL A; 3KNU A; 4YQG A; 4RG1 A; 4CNF A; 1UAL A; 4YQ4 A; 3QUV A; 4JAK A; 4YQS A; 3NK7 A; 4YVJ A; 4YQA A; 3KTY A; 3BBH A; 3DCM X; 1TO0 A; 2O3A A; 2HA8 A; 4JWJ A; 5GMC A; 3N4K A; 4JWF A; 2V3J A; 4H3Y A; 4YVG A; 4YQK A; 4H3Z A; 2CX8 A; 1V2X A; 1V6Z A; 1X7O A; 3KY7 A; 4YQ0 A; 4YQ5 A; 1J85 A; 1VH0 A; 4JAL A; 1MXI A; 5FAI A; 4YPW A; 4YQB A; 2EGV A; 4YQJ A; 3AXZ A; 5CO4 A; 3IC6 A; 5GM8 A; 4KGN A; 1UAM A; 1P9P A; 4L69 A; 4YQ9 A; 1X7P A; 3N4J A; 1VHY A; 2Z0Y A; 3OIN A; 4YVI A; 2QMM A; 4CNE A; 2EGW A; 4YPZ A; 1OY5 A; 4YQQ A; 4XBO A; 4YQD A; 1UAK A; 3OII A; 4YQ3 A; 3KW2 A; 4KDZ A; 3OIJ A; 4JWG A; 3GYQ A; 4YQ7 A; 3ONP A; 4YVK A; 3BBD A; 4JWH A; 3NK6 A; 3IEF A; 1GZ0 A; 4X3L A; 4YQ8 A; 4YQP A; 1NS5 A; 1UAJ A; 4YQO A; 1VHK A; 3L8U A; 4FMW A; 1NXZ A; 4CND A; 1IPA A; 4YPY A; 4MCB A; 1K3R A; 3AIA A; 4YQN A; 4MCD A; 4J3C A; 4YQ2 A; 1Z85 A; 4YVH A;
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