4H3YA

Crystal structure of an asymmetric dimer of a trna (guanine-(n(1)-)-methyltransferase from burkholderia phymatum bound to s-adenosyl homocystein in one half-site
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
Knots found
sequence length
255
structure length
255
Chain Sequence
SMQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDASK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb
source organism Burkholderia phymatum
total genus 77
structure length 255
sequence length 255
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2012-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4h3yA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4h3yA01
4IG6A 3L8UA 4CNGA 2HA8A 4CNEA 1ZJRA 4J3CA 3ONPA 4YQ4A 4YQGA 4YPYA 1TO0A 2CX8A 4YQKA 5GMBA 1NXZA 4YVKA 5FAIA 1K3RA 4YQ6A 3AXZA 5CO4A 1Z85A 1V6ZA 4MCCA 4YQ2A 3E5YA 1VH0A 4YQPA 5GM8A 4YQCA 1IPAA 3NK7A 4YQAA 1VHKA 4YQ9A 3DCMX 4YQ5A 3OINA 4YQ1A 1GZ0A 1X7OA 2QWVA 4X3MA 4CNFA 4MCDA 1NS5A 4YQ0A 4YPZA 2QMMA 4YQTA 4YQNA 3NK6A 1OY5A 3IC6A 1O6DA 4X3LA 4YVJA 4YQOA 4H3ZA 4YVIA 5GMCA 3IEFA 3BBDA 3BBHA 4XBOA 4YQRA 4MCBA 4E8BA 3KY7A 1UAKA 1V2XA 3BBEA 4L69A 4YPWA 1VHYA 4JALA 3GYQA 4YVHA 4YQ3A 1X7PA 4FAKA 2Z0YA 2EGVA 1J85A 3O7BA 4YQ8A 3KTYA 4YQDA 2O3AA 2YY8A 5D9FA 4YQBA 2V3KA 3N4JA 2I6DA 4RG1A 1UALA 3AI9X 3KW2A 4CNDA 3QUVA 3ILKA 3AIAA 4PZKA 4JAKA 1P9PA 4KDZA 4YQJA 4YQSA 1UAJA 4KGNA 4YVGA 2EGWA 4H3YA 3OIIA 4YQQA 4YQ7A 3OIJA 4YQLA 2V3JA 4YQIA 1UAMA 3N4KA 1MXIA 4YPXA 3KNUA
chains in the Genus database with same CATH superfamily
4IG6A 3SSWN 3L8UA 4CNGA 2HA8A 3WRPA 4CNEA 1WRTR 1ZJRA 4J3CA 1WRSR 3ONPA 4YQ4A 4YQGA 4YPYA 1TO0A 2CX8A 4YQKA 5GMBA 1MI7R 1NXZA 4YVKA 5FAIA 1K3RA 4YQ6A 3AXZA 5CO4A 1Z85A 1V6ZA 4MCCA 4YQ2A 3E5YA 1ZT9A 1VH0A 4JWHA 4YQPA 5GM8A 4YQCA 1IPAA 3NK7A 4YQAA 4JWJA 1VHKA 1CO0A 4YQ9A 3DCMX 4YQ5A 3OINA 4YQ1A 1GZ0A 4JWGA 1X7OA 2QWVA 4X3MA 4CNFA 4MCDA 1NS5A 4YQ0A 4YPZA 2QMMA 4YQTA 4YQNA 3NK6A 1OY5A 3IC6A 1O6DA 3KORA 4X3LA 4YVJA 4YQOA 4H3ZA 4YVIA 5GMCA 3IEFA 3BBDA 3G1CA 3BBHA 4YQRA 4XBOA 4MCBA 4FMWA 4E8BA 3KY7A 1RCSA 1UAKA 1V2XA 3BBEA 1JHGA 4L69A 4YPWA 1VHYA 4JALA 3GYQA 4YVHA 4YQ3A 1X7PA 1TROA 4FAKA 2Z0YA 2EGVA 3FRWA 1J85A 3O7BA 4YQ8A 3KTYA 4JWFA 4YQDA 2O3AA 2YY8A 5D9FA 4YQBA 2V3KA 2OZ9R 3N4JA 2I6DA 4RG1A 1UALA 3AI9X 1WRPR 3KW2A 3SSXN 4CNDA 3QUVA 3ILKA 3AIAA 4PZKA 4JAKA 1P9PA 4KDZA 4YQJA 4YQSA 1TRRA 1UAJA 4KGNA 4YVGA 2EGWA 4H3YA 3OIIA 4YQQA 4YQ7A 3OIJA 4YQLA 2V3JA 2XDIA 4YQIA 1UAMA 3N4KA 1MXIA 4YPXA 3KNUA
chains in the Genus database with same CATH topology
4IG6A 3L8UA 4CNGA 2HA8A 4CNEA 1ZJRA 4J3CA 3ONPA 4YQ4A 4YQGA 4YPYA 1TO0A 2CX8A 4YQKA 5GMBA 1NXZA 4YVKA 5FAIA 1K3RA 4YQ6A 3AXZA 5CO4A 1Z85A 1V6ZA 4MCCA 4YQ2A 3E5YA 1VH0A 4JWHA 4YQPA 5GM8A 4YQCA 1IPAA 3NK7A 4YQAA 4JWJA 1VHKA 4YQ9A 3DCMX 4YQ5A 3OINA 4YQ1A 1GZ0A 4JWGA 1X7OA 2QWVA 4X3MA 4CNFA 4MCDA 1NS5A 4YQ0A 4YPZA 2QMMA 4YQTA 4YQNA 3NK6A 1OY5A 3IC6A 1O6DA 4X3LA 4YVJA 4YQOA 4H3ZA 4YVIA 5GMCA 3IEFA 3BBDA 3BBHA 4XBOA 4YQRA 4MCBA 4FMWA 4E8BA 3KY7A 1UAKA 1V2XA 3BBEA 4L69A 4YPWA 1VHYA 4JALA 3GYQA 4YVHA 4YQ3A 1X7PA 4FAKA 2Z0YA 2EGVA 1J85A 3O7BA 4YQ8A 3KTYA 4JWFA 4YQDA 2O3AA 2YY8A 5D9FA 4YQBA 2V3KA 3N4JA 2I6DA 4RG1A 1UALA 3AI9X 3KW2A 4CNDA 3QUVA 3ILKA 3AIAA 4PZKA 4JAKA 1P9PA 4KDZA 4YQJA 4YQSA 1UAJA 4KGNA 4YVGA 2EGWA 4H3YA 3OIIA 4YQQA 4YQ7A 3OIJA 4YQLA 2V3JA 4YQIA 1UAMA 3N4KA 1MXIA 4YPXA 3KNUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IG6 A;  3L8U A;  4CNG A;  2HA8 A;  4CNE A;  1ZJR A;  4J3C A;  3ONP A;  4YQ4 A;  4YQG A;  4YPY A;  1TO0 A;  2CX8 A;  4YQK A;  5GMB A;  1NXZ A;  4YVK A;  5FAI A;  1K3R A;  4YQ6 A;  3AXZ A;  5CO4 A;  1Z85 A;  1V6Z A;  4MCC A;  4YQ2 A;  3E5Y A;  1VH0 A;  4YQP A;  5GM8 A;  4YQC A;  1IPA A;  3NK7 A;  4YQA A;  1VHK A;  4YQ9 A;  3DCM X;  4YQ5 A;  3OIN A;  4YQ1 A;  1GZ0 A;  1X7O A;  2QWV A;  4X3M A;  4CNF A;  4MCD A;  1NS5 A;  4YQ0 A;  4YPZ A;  2QMM A;  4YQT A;  4YQN A;  3NK6 A;  1OY5 A;  3IC6 A;  1O6D A;  4X3L A;  4YVJ A;  4YQO A;  4H3Z A;  4YVI A;  5GMC A;  3IEF A;  3BBD A;  3BBH A;  4XBO A;  4YQR A;  4MCB A;  4E8B A;  3KY7 A;  1UAK A;  1V2X A;  3BBE A;  4L69 A;  4YPW A;  1VHY A;  4JAL A;  3GYQ A;  4YVH A;  4YQ3 A;  1X7P A;  4FAK A;  2Z0Y A;  2EGV A;  1J85 A;  3O7B A;  4YQ8 A;  3KTY A;  4YQD A;  2O3A A;  2YY8 A;  5D9F A;  4YQB A;  2V3K A;  3N4J A;  2I6D A;  4RG1 A;  1UAL A;  3AI9 X;  3KW2 A;  4CND A;  3QUV A;  3ILK A;  3AIA A;  4PZK A;  4JAK A;  1P9P A;  4KDZ A;  4YQJ A;  4YQS A;  1UAJ A;  4KGN A;  4YVG A;  2EGW A;  4H3Y A;  3OII A;  4YQQ A;  4YQ7 A;  3OIJ A;  4YQL A;  2V3J A;  4YQI A;  1UAM A;  3N4K A;  1MXI A;  4YPX A;  3KNU A; 
#chains in the Genus database with same CATH topology
 4IG6 A;  3SSW N;  3L8U A;  4CNG A;  2HA8 A;  3WRP A;  4CNE A;  1WRT R;  1ZJR A;  4J3C A;  1WRS R;  3ONP A;  4YQ4 A;  4YQG A;  4YPY A;  1TO0 A;  2CX8 A;  4YQK A;  5GMB A;  1MI7 R;  1NXZ A;  4YVK A;  5FAI A;  1K3R A;  4YQ6 A;  3AXZ A;  5CO4 A;  1Z85 A;  1V6Z A;  4MCC A;  4YQ2 A;  3E5Y A;  1ZT9 A;  1VH0 A;  4JWH A;  4YQP A;  5GM8 A;  4YQC A;  1IPA A;  3NK7 A;  4YQA A;  4JWJ A;  1VHK A;  1CO0 A;  4YQ9 A;  3DCM X;  4YQ5 A;  3OIN A;  4YQ1 A;  1GZ0 A;  4JWG A;  1X7O A;  2QWV A;  4X3M A;  4CNF A;  4MCD A;  1NS5 A;  4YQ0 A;  4YPZ A;  2QMM A;  4YQT A;  4YQN A;  3NK6 A;  1OY5 A;  3IC6 A;  1O6D A;  3KOR A;  4X3L A;  4YVJ A;  4YQO A;  4H3Z A;  4YVI A;  5GMC A;  3IEF A;  3BBD A;  3G1C A;  3BBH A;  4YQR A;  4XBO A;  4MCB A;  4FMW A;  4E8B A;  3KY7 A;  1RCS A;  1UAK A;  1V2X A;  3BBE A;  1JHG A;  4L69 A;  4YPW A;  1VHY A;  4JAL A;  3GYQ A;  4YVH A;  4YQ3 A;  1X7P A;  1TRO A;  4FAK A;  2Z0Y A;  2EGV A;  3FRW A;  1J85 A;  3O7B A;  4YQ8 A;  3KTY A;  4JWF A;  4YQD A;  2O3A A;  2YY8 A;  5D9F A;  4YQB A;  2V3K A;  2OZ9 R;  3N4J A;  2I6D A;  4RG1 A;  1UAL A;  3AI9 X;  1WRP R;  3KW2 A;  3SSX N;  4CND A;  3QUV A;  3ILK A;  3AIA A;  4PZK A;  4JAK A;  1P9P A;  4KDZ A;  4YQJ A;  4YQS A;  1TRR A;  1UAJ A;  4KGN A;  4YVG A;  2EGW A;  4H3Y A;  3OII A;  4YQQ A;  4YQ7 A;  3OIJ A;  4YQL A;  2V3J A;  2XDI A;  4YQI A;  1UAM A;  3N4K A;  1MXI A;  4YPX A;  3KNU A; 
#chains in the Genus database with same CATH homology
 4IG6 A;  3L8U A;  4CNG A;  2HA8 A;  4CNE A;  1ZJR A;  4J3C A;  3ONP A;  4YQ4 A;  4YQG A;  4YPY A;  1TO0 A;  2CX8 A;  4YQK A;  5GMB A;  1NXZ A;  4YVK A;  5FAI A;  1K3R A;  4YQ6 A;  3AXZ A;  5CO4 A;  1Z85 A;  1V6Z A;  4MCC A;  4YQ2 A;  3E5Y A;  1VH0 A;  4JWH A;  4YQP A;  5GM8 A;  4YQC A;  1IPA A;  3NK7 A;  4YQA A;  4JWJ A;  1VHK A;  4YQ9 A;  3DCM X;  4YQ5 A;  3OIN A;  4YQ1 A;  1GZ0 A;  4JWG A;  1X7O A;  2QWV A;  4X3M A;  4CNF A;  4MCD A;  1NS5 A;  4YQ0 A;  4YPZ A;  2QMM A;  4YQT A;  4YQN A;  3NK6 A;  1OY5 A;  3IC6 A;  1O6D A;  4X3L A;  4YVJ A;  4YQO A;  4H3Z A;  4YVI A;  5GMC A;  3IEF A;  3BBD A;  3BBH A;  4XBO A;  4YQR A;  4MCB A;  4FMW A;  4E8B A;  3KY7 A;  1UAK A;  1V2X A;  3BBE A;  4L69 A;  4YPW A;  1VHY A;  4JAL A;  3GYQ A;  4YVH A;  4YQ3 A;  1X7P A;  4FAK A;  2Z0Y A;  2EGV A;  1J85 A;  3O7B A;  4YQ8 A;  3KTY A;  4JWF A;  4YQD A;  2O3A A;  2YY8 A;  5D9F A;  4YQB A;  2V3K A;  3N4J A;  2I6D A;  4RG1 A;  1UAL A;  3AI9 X;  3KW2 A;  4CND A;  3QUV A;  3ILK A;  3AIA A;  4PZK A;  4JAK A;  1P9P A;  4KDZ A;  4YQJ A;  4YQS A;  1UAJ A;  4KGN A;  4YVG A;  2EGW A;  4H3Y A;  3OII A;  4YQQ A;  4YQ7 A;  3OIJ A;  4YQL A;  2V3J A;  4YQI A;  1UAM A;  3N4K A;  1MXI A;  4YPX A;  3KNU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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