1GQ6 | Genus

Total Genus 109

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	109
Knots found	KnotProt 2.0: S +3₁ +3₁ +3₁
sequence length	301
structure length	295
Chain Sequence	SPRYAQIPTFMRLPHDPQPRGYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRGPGTFDLINCVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHGPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCVGDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQYARAH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 295 atoms

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295 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Streptomyces clavuligerus
publication title	Oligomeric Structure of Proclavaminic Acid Amidino Hydrolase: Evolution of a Hydrolytic Enzyme in Clavulanic Acid Biosynthesis pubmed doi rcsb
molecule keywords	PROCLAVAMINATE AMIDINO HYDROLASE
total genus	109
structure length	295
sequence length	301
chains with identical sequence	B, C
other databases	KnotProt 2.0: S +3₁ +3₁ +3₁
ec nomenclature	ec 3.5.3.22: Proclavaminate amidinohydrolase.
pdb deposition date	2001-11-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00491	Arginase	Arginase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.800.10	Alpha Beta	3-Layer(aba) Sandwich	Arginase; Chain A	Ureohydrolase domain	1gq6A00

4IU1A 1WOIA 4Q3TA 3MFVA 1HQ5A 4RLAA 2A0MA 2EIVA 1HQGA 4Q3UA 1P8MA 4Q3RA 3SKKA 3F80A 3NIPA 4Q42A 3LHLA 4IU5A 4I06A 4IXUA 3E6VA 4MYFA 3LP7A 3MJLA 4FCKA 1P8SA 1GQ7A 3RLAA 3E9BA 2PLLA 1TA1A 4GWDA 4Q3VA 4FCIA 1P8NA 3KV2A 2EF5A 1HQFA 2PHAA 4GSVA 4MXRA 3SJTA 4DZ4A 4IE3A 5CEVA 1T4RA 1ZPEA 1T5GA 1XFKA 5RLAA 3E8QA 1P8QA 1T4SA 3PZLA 4RHLA 2RLAA 1TBJA 3E6KA 4IE1A 1T4PA 1D3VA 4Q3QA 1TBLA 3GMZA 1ZPGA 4Q3RC 4GSMA 4IXVA 1WOGA 4RHJA 2CEVA 1WVBA 1T5FA 3DJ8A 4HWWA 3TF3A 2EF4A 2ZAVA 1RLAA 4IU4A 3GN0A 1TBHA 1P8RA 5HJ9A 1WVAA 3THJA 3M1RA 4G3HA 1GQ6A 4GWCA 3SL1A 3MMRA 4Q40A 4RHKA 3THHA 3CEVA 3LP4A 4HXQA 2PHOA 3NIOA 1HQHA 4GSZA 1T4TA 4ITYA 4MYLA 4Q3SA 5HJAA 3SL0A 1P8OA 3MFWA 1CEVA 4MYNA 4IU0A 4Q41A 1WOHA 3THEA 2AEBA 1PQ3A 4Q3PA 1R1OA 4RHQA 4RHMA 1HQXA 3NIQA 4MYKA 4HZEA 4CEVA 4IE2A 3E8ZA 3TH7A 1P8PA 4RHIA
chains in the Genus database with same CATH superfamily

4IU1A 1WOIA 4Q3TA 4RN0A 3MFVA 5EFGA 5EEFA 1HQ5A 1ZZ3A 4RLAA 2A0MA 3EWFA 5G0XA 2EIVA 1HQGA 4RN1A 4Q3UA 5ICNB 1P8MA 4Q3RA 1T69A 3SKKA 4QA3A 2VQJA 3F80A 2VQWG 3LHLA 3NIPA 3Q9EA 4Q42A 3RQDA 5A2SA 4IU5A 5DC5A 2GH6A 4I06A 4IXUA 4ZURA 3E6VA 5EFKB 4QA5A 4QA7A 4MYFA 4CQFA 3MAXA 3LP7A 3MJLA 4BZ9A 4FCKA 1P8SA 1GQ7A 3RLAA 4LY1A 3E9BA 5FUEA 2PLLA 4ZUNA 4QA4A 1TA1A 5EFJD 3MZ7A 4GWDA 3EZPA 4Q3VA 1P8NA 4FCIA 3KV2A 2EF5A 1HQFA 2PHAA 4GSVA 4MXRA 3F06A 5D1BA 4QA0A 5THTA 5DC7A 3SJTA 4DZ4A 5EFBD 4IE3A 5CEVA 1T4RA 1ZPEA 4BZ8A 1T5GA 1XFKA 5RLAA 3E8QA 5THVA 4BZ5A 1P8QA 2VCGA 3MZ3A 1T4SA 3PZLA 4RHLA 3F0RA 2RLAA 1VKGA 2VQQA 4A69A 2VQMA 1TBJA 3E6KA 1C3PA 4IE1A 3Q9FA 5G1AA 1T4PA 5G0JA 1D3VA 3Q9CA 4Q3QA 5THUA 1TBLA 3F07A 5LI3A 3GMZA 5G13A 3EW8A 5JI5A 1ZPGA 4Q3RC 4QA1A 5IX0A 4GSMA 4LXZA 3MZ6A 5IWGA 5G3WA 4IXVA 5EEKA 1WOGA 4RHJA 2CEVA 1WVBA 1T5FA 5EF8A 5G10A 3DJ8A 4HWWA 4ZUOA 3TF3A 3MZ4A 1ZZ1A 4QA6A 2EF4A 1C3SA 4ZUQA 3SFHA 4ZUPA 2ZAVA 5D1CA 1RLAA 4IU4A 5EFHA 5EENA 3GN0A 4BKXB 1TBHA 4QA2A 1P8RA 1C3RA 5HJ9A 1WVAA 3ZNRA 2VQVA 5EEMA 5G0GA 2V5WA 3THJA 3M1RA 4ZUMA 4G3HA 5G0YA 1GQ6A 4GWCA 3SL1A 5G1CA 3MMRA 3EZTA 3ZNSA 5DC6A 5EEIA 4Q40A 4RHKA 5EFNA 3THHA 4BZ7A 3CEVA 3LP4A 1T67A 1T64A 3MENA 5G11A 5THSA 5G12A 4HXQA 2PHOA 1W22A 1HQHA 3NIOA 1T4TA 3Q9BA 4GSZA 4ITYA 4MYLA 4Q3SA 5HJAA 5G17A 3SL0A 1P8OA 3MFWA 1CEVA 4MYNA 5BWZA 3C0ZA 3C0YA 2V5XA 5G1BA 4IU0A 5G0HA 4Q41A 1WOHA 5FCWA 3THEA 2AEBA 5DC8A 1PQ3A 4CBYA 4Q3PA 1R1OA 4RHQA 4RHMA 1ZZ0A 4BZ6A 1HQXA 3NIQA 4MYKA 3C10A 4HZEA 5EF7A 5G0IA 4CEVA 4IE2A 5D1DA 3E8ZA 4RN2A 3TH7A 2VQOA 4CBTA 1P8PA 4RHIA 3SFFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4IU1 A;  1WOI A;  4Q3T A;  3MFV A;  1HQ5 A;  4RLA A;  2A0M A;  2EIV A;  1HQG A;  4Q3U A;  1P8M A;  4Q3R A;  3SKK A;  3F80 A;  3NIP A;  4Q42 A;  3LHL A;  4IU5 A;  4I06 A;  4IXU A;  3E6V A;  4MYF A;  3LP7 A;  3MJL A;  4FCK A;  1P8S A;  1GQ7 A;  3RLA A;  3E9B A;  2PLL A;  1TA1 A;  4GWD A;  4Q3V A;  4FCI A;  1P8N A;  3KV2 A;  2EF5 A;  1HQF A;  2PHA A;  4GSV A;  4MXR A;  3SJT A;  4DZ4 A;  4IE3 A;  5CEV A;  1T4R A;  1ZPE A;  1T5G A;  1XFK A;  5RLA A;  3E8Q A;  1P8Q A;  1T4S A;  3PZL A;  4RHL A;  2RLA A;  1TBJ A;  3E6K A;  4IE1 A;  1T4P A;  1D3V A;  4Q3Q A;  1TBL A;  3GMZ A;  1ZPG A;  4Q3R C;  4GSM A;  4IXV A;  1WOG A;  4RHJ A;  2CEV A;  1WVB A;  1T5F A;  3DJ8 A;  4HWW A;  3TF3 A;  2EF4 A;  2ZAV A;  1RLA A;  4IU4 A;  3GN0 A;  1TBH A;  1P8R A;  5HJ9 A;  1WVA A;  3THJ A;  3M1R A;  4G3H A;  1GQ6 A;  4GWC A;  3SL1 A;  3MMR A;  4Q40 A;  4RHK A;  3THH A;  3CEV A;  3LP4 A;  4HXQ A;  2PHO A;  3NIO A;  1HQH A;  4GSZ A;  1T4T A;  4ITY A;  4MYL A;  4Q3S A;  5HJA A;  3SL0 A;  1P8O A;  3MFW A;  1CEV A;  4MYN A;  4IU0 A;  4Q41 A;  1WOH A;  3THE A;  2AEB A;  1PQ3 A;  4Q3P A;  1R1O A;  4RHQ A;  4RHM A;  1HQX A;  3NIQ A;  4MYK A;  4HZE A;  4CEV A;  4IE2 A;  3E8Z A;  3TH7 A;  1P8P A;  4RHI A; 
#chains in the Genus database with same CATH topology
 4IU1 A;  1WOI A;  4Q3T A;  4RN0 A;  3MFV A;  5EFG A;  5EEF A;  1HQ5 A;  1ZZ3 A;  4RLA A;  2A0M A;  3EWF A;  5G0X A;  2EIV A;  1HQG A;  4RN1 A;  4Q3U A;  5ICN B;  1P8M A;  4Q3R A;  1T69 A;  3SKK A;  4QA3 A;  2VQJ A;  3F80 A;  2VQW G;  3LHL A;  3NIP A;  3Q9E A;  4Q42 A;  3RQD A;  5A2S A;  4IU5 A;  5DC5 A;  2GH6 A;  4I06 A;  4IXU A;  4ZUR A;  3E6V A;  5EFK B;  4QA5 A;  4QA7 A;  4MYF A;  4CQF A;  3MAX A;  3LP7 A;  3MJL A;  4BZ9 A;  4FCK A;  1P8S A;  1GQ7 A;  3RLA A;  4LY1 A;  3E9B A;  5FUE A;  2PLL A;  4ZUN A;  4QA4 A;  1TA1 A;  5EFJ D;  3MZ7 A;  4GWD A;  3EZP A;  4Q3V A;  1P8N A;  4FCI A;  3KV2 A;  2EF5 A;  1HQF A;  2PHA A;  4GSV A;  4MXR A;  3F06 A;  5D1B A;  4QA0 A;  5THT A;  5DC7 A;  3SJT A;  4DZ4 A;  5EFB D;  4IE3 A;  5CEV A;  1T4R A;  1ZPE A;  4BZ8 A;  1T5G A;  1XFK A;  5RLA A;  3E8Q A;  5THV A;  4BZ5 A;  1P8Q A;  2VCG A;  3MZ3 A;  1T4S A;  3PZL A;  4RHL A;  3F0R A;  2RLA A;  1VKG A;  2VQQ A;  4A69 A;  2VQM A;  1TBJ A;  3E6K A;  1C3P A;  4IE1 A;  3Q9F A;  5G1A A;  1T4P A;  5G0J A;  1D3V A;  3Q9C A;  4Q3Q A;  5THU A;  1TBL A;  3F07 A;  5LI3 A;  3GMZ A;  5G13 A;  3EW8 A;  5JI5 A;  1ZPG A;  4Q3R C;  4QA1 A;  5IX0 A;  4GSM A;  4LXZ A;  3MZ6 A;  5IWG A;  5G3W A;  4IXV A;  5EEK A;  1WOG A;  4RHJ A;  2CEV A;  1WVB A;  1T5F A;  5EF8 A;  5G10 A;  3DJ8 A;  4HWW A;  4ZUO A;  3TF3 A;  3MZ4 A;  1ZZ1 A;  4QA6 A;  2EF4 A;  1C3S A;  4ZUQ A;  3SFH A;  4ZUP A;  2ZAV A;  5D1C A;  1RLA A;  4IU4 A;  5EFH A;  5EEN A;  3GN0 A;  4BKX B;  1TBH A;  4QA2 A;  1P8R A;  1C3R A;  5HJ9 A;  1WVA A;  3ZNR A;  2VQV A;  5EEM A;  5G0G A;  2V5W A;  3THJ A;  3M1R A;  4ZUM A;  4G3H A;  5G0Y A;  1GQ6 A;  4GWC A;  3SL1 A;  5G1C A;  3MMR A;  3EZT A;  3ZNS A;  5DC6 A;  5EEI A;  4Q40 A;  4RHK A;  5EFN A;  3THH A;  4BZ7 A;  3CEV A;  3LP4 A;  1T67 A;  1T64 A;  3MEN A;  5G11 A;  5THS A;  5G12 A;  4HXQ A;  2PHO A;  1W22 A;  1HQH A;  3NIO A;  1T4T A;  3Q9B A;  4GSZ A;  4ITY A;  4MYL A;  4Q3S A;  5HJA A;  5G17 A;  3SL0 A;  1P8O A;  3MFW A;  1CEV A;  4MYN A;  5BWZ A;  3C0Z A;  3C0Y A;  2V5X A;  5G1B A;  4IU0 A;  5G0H A;  4Q41 A;  1WOH A;  5FCW A;  3THE A;  2AEB A;  5DC8 A;  1PQ3 A;  4CBY A;  4Q3P A;  1R1O A;  4RHQ A;  4RHM A;  1ZZ0 A;  4BZ6 A;  1HQX A;  3NIQ A;  4MYK A;  3C10 A;  4HZE A;  5EF7 A;  5G0I A;  4CEV A;  4IE2 A;  5D1D A;  3E8Z A;  4RN2 A;  3TH7 A;  2VQO A;  4CBT A;  1P8P A;  4RHI A;  3SFF A; 
#chains in the Genus database with same CATH homology
 4IU1 A;  1WOI A;  4Q3T A;  3MFV A;  1HQ5 A;  4RLA A;  2A0M A;  2EIV A;  1HQG A;  4Q3U A;  1P8M A;  4Q3R A;  3SKK A;  3F80 A;  3NIP A;  4Q42 A;  3LHL A;  4IU5 A;  4I06 A;  4IXU A;  3E6V A;  4MYF A;  3LP7 A;  3MJL A;  4FCK A;  1P8S A;  1GQ7 A;  3RLA A;  3E9B A;  2PLL A;  1TA1 A;  4GWD A;  4Q3V A;  4FCI A;  1P8N A;  3KV2 A;  2EF5 A;  1HQF A;  2PHA A;  4GSV A;  4MXR A;  3SJT A;  4DZ4 A;  4IE3 A;  5CEV A;  1T4R A;  1ZPE A;  1T5G A;  1XFK A;  5RLA A;  3E8Q A;  1P8Q A;  1T4S A;  3PZL A;  4RHL A;  2RLA A;  1TBJ A;  3E6K A;  4IE1 A;  1T4P A;  1D3V A;  4Q3Q A;  1TBL A;  3GMZ A;  1ZPG A;  4Q3R C;  4GSM A;  4IXV A;  1WOG A;  4RHJ A;  2CEV A;  1WVB A;  1T5F A;  3DJ8 A;  4HWW A;  3TF3 A;  2EF4 A;  2ZAV A;  1RLA A;  4IU4 A;  3GN0 A;  1TBH A;  1P8R A;  5HJ9 A;  1WVA A;  3THJ A;  3M1R A;  4G3H A;  1GQ6 A;  4GWC A;  3SL1 A;  3MMR A;  4Q40 A;  4RHK A;  3THH A;  3CEV A;  3LP4 A;  4HXQ A;  2PHO A;  3NIO A;  1HQH A;  4GSZ A;  1T4T A;  4ITY A;  4MYL A;  4Q3S A;  5HJA A;  3SL0 A;  1P8O A;  3MFW A;  1CEV A;  4MYN A;  4IU0 A;  4Q41 A;  1WOH A;  3THE A;  2AEB A;  1PQ3 A;  4Q3P A;  1R1O A;  4RHQ A;  4RHM A;  1HQX A;  3NIQ A;  4MYK A;  4HZE A;  4CEV A;  4IE2 A;  3E8Z A;  3TH7 A;  1P8P A;  4RHI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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1GQ6A

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations