3Q9FA

Crystal structure of apah complexed with caps
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
341
structure length
341
Chain Sequence
b'MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Acetylpolyamine amidohydrolase
publication title Structure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases .
pubmed doi rcsb
source organism Mycoplana ramosa
molecule tags Hydrolase
total genus 113
structure length 341
sequence length 341
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 3.5.1.48: Acetylspermidine deacetylase.
pdb deposition date 2011-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3q9fA00
4QA3A 5IX0A 3MZ4A 5G1CA 3Q9CA 4BZ9A 5G17A 4BZ8A 3MAXA 3MZ7A 3MZ3A 3F0RA 4CBYA 5EFGA 5THTA 5DC7A 3MZ6A 4ZUQA 4ZUOA 5ICNB 4BZ6A 4ZUNA 5JI5A 1ZZ3A 4BKXB 4RN1A 5DC5A 5G1BA 3EWFA 1ZZ0A 5D1BA 5FUEA 3C0ZA 1C3SA 5G12A 3ZNRA 5EFHA 3C0YA 2VQOA 2VQQA 5IWGA 4QA0A 5THUA 3RQDA 3EW8A 4QA4A 1C3RA 5G0IA 2VQMA 5EF7A 2VCGA 1ZZ1A 5THVA 5EEKA 5G0HA 5LI3A 2GH6A 4ZURA 1T64A 4QA1A 3SFHA 4RN2A 4QA7A 4CQFA 5G3WA 3EZTA 5A2SA 4QA5A 4LY1A 5EFJD 3MENA 4BZ7A 5EFKB 5G0GA 5DC8A 1W22A 5EEMA 4QA2A 5EFNA 3Q9FA 5EEIA 5G10A 1VKGA 5G0JA 4LXZA 3F06A 2V5WA 5EFBD 3EZPA 5D1CA 5EEFA 2VQJA 5G13A 5EENA 4A69A 3SFFA 5FCWA 5THSA 2VQVA 4RN0A 5D1DA 1C3PA 5G1AA 3Q9EA 4QA6A 5G0XA 3Q9BA 5G11A 5G0YA 4CBTA 5BWZA 1T69A 2V5XA 5DC6A 5EF8A 3F07A 3C10A 3ZNSA 2VQWG 4BZ5A 1T67A 4ZUMA 4ZUPA
chains in the Genus database with same CATH superfamily
4RHQA 4QA3A 3E8ZA 5IX0A 3MZ4A 5G1CA 3Q9CA 1T4RA 4BZ9A 4MYKA 1TA1A 5G17A 3GN0A 3MFWA 4IE1A 4BZ8A 3MAXA 2EF4A 1ZPEA 3MZ7A 4G3HA 3MZ3A 4Q3VA 3F0RA 4CBYA 5EFGA 5THTA 5DC7A 3MZ6A 3DJ8A 2AEBA 4RHKA 5CEVA 4Q3RC 4ZUQA 3SKKA 4ZUOA 5ICNB 4BZ6A 3RLAA 3E6VA 3LP7A 4ZUNA 5HJ9A 5JI5A 1ZZ3A 1RLAA 4HXQA 1P8NA 1PQ3A 4CEVA 4BKXB 4RN1A 5DC5A 5G1BA 1D3VA 3TH7A 4MYNA 3EWFA 1ZZ0A 3GMZA 4IU4A 3CEVA 4Q42A 5D1BA 3C0ZA 5FUEA 4HWWA 1C3SA 5G12A 3LP4A 3ZNRA 2ZAVA 5EFHA 3THHA 1HQHA 3MMRA 3C0YA 2VQQA 2VQOA 2A0MA 4IE2A 4ITYA 4IXUA 3NIOA 4QA0A 5IWGA 4Q3QA 1HQ5A 4IU5A 5THUA 3RQDA 3THJA 4GSMA 4Q41A 1WVAA 3F80A 3KV2A 1WOIA 1WOHA 3EW8A 4RHMA 4QA4A 1C3RA 3SJTA 5G0IA 2VQMA 1T4SA 2VCGA 1ZZ1A 5EF7A 1P8PA 5THVA 5EEKA 3E8QA 5G0HA 1T5FA 2CEVA 2GH6A 1T64A 4ZURA 5LI3A 4RHLA 1R1OA 3THEA 4IE3A 1P8MA 4QA1A 1P8RA 3TF3A 4MYFA 3SL1A 3SFHA 2PHOA 1P8OA 1HQFA 4RN2A 4Q3TA 4DZ4A 4QA7A 4CQFA 5G3WA 1XFKA 3MJLA 3EZTA 3MFVA 4I06A 1TBLA 5A2SA 4IXVA 4Q3UA 4GSVA 3NIPA 4QA5A 4LY1A 4FCKA 4RHJA 3MENA 4FCIA 5EFJD 4RLAA 4BZ7A 5EFKB 5G0GA 1CEVA 4Q3PA 2PLLA 5DC8A 3M1RA 1W22A 5EEMA 5RLAA 2RLAA 4MXRA 4QA2A 5EFNA 3Q9FA 5EEIA 5G10A 1VKGA 5G0JA 1T4PA 4LXZA 3F06A 2V5WA 5EFBD 3EZPA 4GWDA 3LHLA 5D1CA 5EEFA 2EIVA 2VQJA 1WVBA 3SL0A 5G13A 5EENA 3E6KA 4A69A 3SFFA 1T4TA 1T5GA 1ZPGA 2EF5A 1WOGA 4MYLA 5FCWA 5THSA 2VQVA 4RN0A 5D1DA 1C3PA 4Q3SA 1TBHA 3Q9EA 5G1AA 4RHIA 5HJAA 3E9BA 4HZEA 4QA6A 5G0XA 3Q9BA 5G11A 3PZLA 1GQ7A 5G0YA 4CBTA 1TBJA 4IU0A 5BWZA 1HQXA 1T69A 2V5XA 1P8QA 1GQ6A 4GWCA 5DC6A 4Q40A 1HQGA 3F07A 5EF8A 3C10A 1P8SA 3ZNSA 2VQWG 4BZ5A 1T67A 2PHAA 4IU1A 4ZUMA 4ZUPA 4Q3RA 4GSZA 3NIQA
chains in the Genus database with same CATH topology
4QA3A 5IX0A 3MZ4A 5G1CA 3Q9CA 4BZ9A 5G17A 4BZ8A 3MAXA 3MZ7A 3MZ3A 3F0RA 4CBYA 5EFGA 5THTA 5DC7A 3MZ6A 4ZUQA 4ZUOA 5ICNB 4BZ6A 4ZUNA 5JI5A 1ZZ3A 4BKXB 4RN1A 5DC5A 5G1BA 3EWFA 1ZZ0A 5D1BA 5FUEA 3C0ZA 1C3SA 5G12A 3ZNRA 5EFHA 3C0YA 2VQOA 2VQQA 5IWGA 4QA0A 5THUA 3RQDA 3EW8A 4QA4A 1C3RA 5G0IA 2VQMA 5EF7A 2VCGA 1ZZ1A 5THVA 5EEKA 5G0HA 5LI3A 2GH6A 4ZURA 1T64A 4QA1A 3SFHA 4RN2A 4QA7A 4CQFA 5G3WA 3EZTA 5A2SA 4QA5A 4LY1A 5EFJD 3MENA 4BZ7A 5EFKB 5G0GA 5DC8A 1W22A 5EEMA 4QA2A 5EFNA 3Q9FA 5EEIA 5G10A 1VKGA 5G0JA 4LXZA 3F06A 2V5WA 5EFBD 3EZPA 5D1CA 5EEFA 2VQJA 5G13A 5EENA 4A69A 3SFFA 5FCWA 5THSA 2VQVA 4RN0A 5D1DA 1C3PA 5G1AA 3Q9EA 4QA6A 5G0XA 3Q9BA 5G11A 5G0YA 4CBTA 5BWZA 1T69A 2V5XA 5DC6A 5EF8A 3F07A 3C10A 3ZNSA 2VQWG 4BZ5A 1T67A 4ZUMA 4ZUPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QA3 A;  5IX0 A;  3MZ4 A;  5G1C A;  3Q9C A;  4BZ9 A;  5G17 A;  4BZ8 A;  3MAX A;  3MZ7 A;  3MZ3 A;  3F0R A;  4CBY A;  5EFG A;  5THT A;  5DC7 A;  3MZ6 A;  4ZUQ A;  4ZUO A;  5ICN B;  4BZ6 A;  4ZUN A;  5JI5 A;  1ZZ3 A;  4BKX B;  4RN1 A;  5DC5 A;  5G1B A;  3EWF A;  1ZZ0 A;  5D1B A;  5FUE A;  3C0Z A;  1C3S A;  5G12 A;  3ZNR A;  5EFH A;  3C0Y A;  2VQO A;  2VQQ A;  5IWG A;  4QA0 A;  5THU A;  3RQD A;  3EW8 A;  4QA4 A;  1C3R A;  5G0I A;  2VQM A;  5EF7 A;  2VCG A;  1ZZ1 A;  5THV A;  5EEK A;  5G0H A;  5LI3 A;  2GH6 A;  4ZUR A;  1T64 A;  4QA1 A;  3SFH A;  4RN2 A;  4QA7 A;  4CQF A;  5G3W A;  3EZT A;  5A2S A;  4QA5 A;  4LY1 A;  5EFJ D;  3MEN A;  4BZ7 A;  5EFK B;  5G0G A;  5DC8 A;  1W22 A;  5EEM A;  4QA2 A;  5EFN A;  3Q9F A;  5EEI A;  5G10 A;  1VKG A;  5G0J A;  4LXZ A;  3F06 A;  2V5W A;  5EFB D;  3EZP A;  5D1C A;  5EEF A;  2VQJ A;  5G13 A;  5EEN A;  4A69 A;  3SFF A;  5FCW A;  5THS A;  2VQV A;  4RN0 A;  5D1D A;  1C3P A;  5G1A A;  3Q9E A;  4QA6 A;  5G0X A;  3Q9B A;  5G11 A;  5G0Y A;  4CBT A;  5BWZ A;  1T69 A;  2V5X A;  5DC6 A;  5EF8 A;  3F07 A;  3C10 A;  3ZNS A;  2VQW G;  4BZ5 A;  1T67 A;  4ZUM A;  4ZUP A; 
#chains in the Genus database with same CATH topology
 4RHQ A;  4QA3 A;  3E8Z A;  5IX0 A;  3MZ4 A;  5G1C A;  3Q9C A;  1T4R A;  4BZ9 A;  4MYK A;  1TA1 A;  5G17 A;  3GN0 A;  3MFW A;  4IE1 A;  4BZ8 A;  3MAX A;  2EF4 A;  1ZPE A;  3MZ7 A;  4G3H A;  3MZ3 A;  4Q3V A;  3F0R A;  4CBY A;  5EFG A;  5THT A;  5DC7 A;  3MZ6 A;  3DJ8 A;  2AEB A;  4RHK A;  5CEV A;  4Q3R C;  4ZUQ A;  3SKK A;  4ZUO A;  5ICN B;  4BZ6 A;  3RLA A;  3E6V A;  3LP7 A;  4ZUN A;  5HJ9 A;  5JI5 A;  1ZZ3 A;  1RLA A;  4HXQ A;  1P8N A;  1PQ3 A;  4CEV A;  4BKX B;  4RN1 A;  5DC5 A;  5G1B A;  1D3V A;  3TH7 A;  4MYN A;  3EWF A;  1ZZ0 A;  3GMZ A;  4IU4 A;  3CEV A;  4Q42 A;  5D1B A;  3C0Z A;  5FUE A;  4HWW A;  1C3S A;  5G12 A;  3LP4 A;  3ZNR A;  2ZAV A;  5EFH A;  3THH A;  1HQH A;  3MMR A;  3C0Y A;  2VQQ A;  2VQO A;  2A0M A;  4IE2 A;  4ITY A;  4IXU A;  3NIO A;  4QA0 A;  5IWG A;  4Q3Q A;  1HQ5 A;  4IU5 A;  5THU A;  3RQD A;  3THJ A;  4GSM A;  4Q41 A;  1WVA A;  3F80 A;  3KV2 A;  1WOI A;  1WOH A;  3EW8 A;  4RHM A;  4QA4 A;  1C3R A;  3SJT A;  5G0I A;  2VQM A;  1T4S A;  2VCG A;  1ZZ1 A;  5EF7 A;  1P8P A;  5THV A;  5EEK A;  3E8Q A;  5G0H A;  1T5F A;  2CEV A;  2GH6 A;  1T64 A;  4ZUR A;  5LI3 A;  4RHL A;  1R1O A;  3THE A;  4IE3 A;  1P8M A;  4QA1 A;  1P8R A;  3TF3 A;  4MYF A;  3SL1 A;  3SFH A;  2PHO A;  1P8O A;  1HQF A;  4RN2 A;  4Q3T A;  4DZ4 A;  4QA7 A;  4CQF A;  5G3W A;  1XFK A;  3MJL A;  3EZT A;  3MFV A;  4I06 A;  1TBL A;  5A2S A;  4IXV A;  4Q3U A;  4GSV A;  3NIP A;  4QA5 A;  4LY1 A;  4FCK A;  4RHJ A;  3MEN A;  4FCI A;  5EFJ D;  4RLA A;  4BZ7 A;  5EFK B;  5G0G A;  1CEV A;  4Q3P A;  2PLL A;  5DC8 A;  3M1R A;  1W22 A;  5EEM A;  5RLA A;  2RLA A;  4MXR A;  4QA2 A;  5EFN A;  3Q9F A;  5EEI A;  5G10 A;  1VKG A;  5G0J A;  1T4P A;  4LXZ A;  3F06 A;  2V5W A;  5EFB D;  3EZP A;  4GWD A;  3LHL A;  5D1C A;  5EEF A;  2EIV A;  2VQJ A;  1WVB A;  3SL0 A;  5G13 A;  5EEN A;  3E6K A;  4A69 A;  3SFF A;  1T4T A;  1T5G A;  1ZPG A;  2EF5 A;  1WOG A;  4MYL A;  5FCW A;  5THS A;  2VQV A;  4RN0 A;  5D1D A;  1C3P A;  4Q3S A;  1TBH A;  3Q9E A;  5G1A A;  4RHI A;  5HJA A;  3E9B A;  4HZE A;  4QA6 A;  5G0X A;  3Q9B A;  5G11 A;  3PZL A;  1GQ7 A;  5G0Y A;  4CBT A;  1TBJ A;  4IU0 A;  5BWZ A;  1HQX A;  1T69 A;  2V5X A;  1P8Q A;  1GQ6 A;  4GWC A;  5DC6 A;  4Q40 A;  1HQG A;  3F07 A;  5EF8 A;  3C10 A;  1P8S A;  3ZNS A;  2VQW G;  4BZ5 A;  1T67 A;  2PHA A;  4IU1 A;  4ZUM A;  4ZUP A;  4Q3R A;  4GSZ A;  3NIQ A; 
#chains in the Genus database with same CATH homology
 4QA3 A;  5IX0 A;  3MZ4 A;  5G1C A;  3Q9C A;  4BZ9 A;  5G17 A;  4BZ8 A;  3MAX A;  3MZ7 A;  3MZ3 A;  3F0R A;  4CBY A;  5EFG A;  5THT A;  5DC7 A;  3MZ6 A;  4ZUQ A;  4ZUO A;  5ICN B;  4BZ6 A;  4ZUN A;  5JI5 A;  1ZZ3 A;  4BKX B;  4RN1 A;  5DC5 A;  5G1B A;  3EWF A;  1ZZ0 A;  5D1B A;  5FUE A;  3C0Z A;  1C3S A;  5G12 A;  3ZNR A;  5EFH A;  3C0Y A;  2VQO A;  2VQQ A;  5IWG A;  4QA0 A;  5THU A;  3RQD A;  3EW8 A;  4QA4 A;  1C3R A;  5G0I A;  2VQM A;  5EF7 A;  2VCG A;  1ZZ1 A;  5THV A;  5EEK A;  5G0H A;  5LI3 A;  2GH6 A;  4ZUR A;  1T64 A;  4QA1 A;  3SFH A;  4RN2 A;  4QA7 A;  4CQF A;  5G3W A;  3EZT A;  5A2S A;  4QA5 A;  4LY1 A;  5EFJ D;  3MEN A;  4BZ7 A;  5EFK B;  5G0G A;  5DC8 A;  1W22 A;  5EEM A;  4QA2 A;  5EFN A;  3Q9F A;  5EEI A;  5G10 A;  1VKG A;  5G0J A;  4LXZ A;  3F06 A;  2V5W A;  5EFB D;  3EZP A;  5D1C A;  5EEF A;  2VQJ A;  5G13 A;  5EEN A;  4A69 A;  3SFF A;  5FCW A;  5THS A;  2VQV A;  4RN0 A;  5D1D A;  1C3P A;  5G1A A;  3Q9E A;  4QA6 A;  5G0X A;  3Q9B A;  5G11 A;  5G0Y A;  4CBT A;  5BWZ A;  1T69 A;  2V5X A;  5DC6 A;  5EF8 A;  3F07 A;  3C10 A;  3ZNS A;  2VQW G;  4BZ5 A;  1T67 A;  4ZUM A;  4ZUP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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