1P8PA

Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase i.
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDNSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGNHKPETDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase I
pubmed doi rcsb
molecule keywords Arginase 1
molecule tags Hydrolase
source organism Rattus norvegicus
total genus 105
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1p8pA00
1RLAA 3E9BA 1P8OA 1HQGA 1WOIA 4IE2A 4Q3TA 3DJ8A 4GSMA 4I06A 1HQ5A 4IU5A 5HJAA 3LHLA 4Q3PA 3NIQA 3NIOA 1GQ6A 1TBLA 4RHMA 3E6KA 4RLAA 4IXVA 3CEVA 5RLAA 4FCIA 1CEVA 3THEA 1T4SA 1D3VA 2ZAVA 1TBHA 2A0MA 4GSZA 4CEVA 4GWCA 3SL0A 3PZLA 3LP7A 4RHQA 1HQFA 4HWWA 4HXQA 4RHKA 1HQXA 4MYFA 3THHA 1ZPGA 1P8SA 3TF3A 4Q3SA 3MFVA 1XFKA 3SL1A 3SKKA 2PHOA 2EIVA 4MXRA 4Q42A 3GN0A 3M1RA 3NIPA 4MYNA 1P8QA 4Q40A 4IXUA 4RHJA 1R1OA 4GWDA 1ZPEA 3GMZA 1T5FA 2PLLA 1WOHA 2RLAA 1TBJA 4G3HA 2PHAA 3MJLA 3THJA 3E6VA 4MYLA 4Q3RA 3SJTA 1T4RA 2EF5A 2CEVA 4Q41A 1T4TA 3TH7A 5CEVA 3RLAA 3MMRA 1P8RA 4GSVA 4IE3A 4RHIA 4MYKA 1WVBA 3F80A 3KV2A 1TA1A 3E8ZA 2EF4A 3LP4A 4FCKA 1P8PA 4HZEA 4Q3UA 1T4PA 3MFWA 4Q3RC 4DZ4A 1WOGA 1PQ3A 4Q3VA 4IU4A 5HJ9A 4ITYA 3E8QA 1P8NA 4IU0A 2AEBA 4RHLA 1WVAA 4IE1A 1GQ7A 1HQHA 4IU1A 4Q3QA 1P8MA 1T5GA
chains in the Genus database with same CATH superfamily
1RLAA 3E9BA 5THTA 1P8OA 5G0JA 5THSA 1HQGA 1WOIA 4IE2A 4Q3TA 1C3SA 4ZURA 3EZPA 3SFFA 3DJ8A 5EFKB 4CBYA 4GSMA 2V5XA 4I06A 1HQ5A 4IU5A 2VQWG 5G13A 5HJAA 4LXZA 3LHLA 4Q3PA 3NIQA 3NIOA 1GQ6A 1TBLA 4RHMA 3E6KA 1T69A 5G1CA 4RN1A 5G12A 5DC6A 4QA3A 5ICNB 4RLAA 3C10A 4IXVA 3CEVA 5RLAA 3Q9BA 4FCIA 4BZ6A 1CEVA 5G3WA 3THEA 1T4SA 1D3VA 4A69A 5IX0A 5A2SA 2ZAVA 5DC5A 1TBHA 2A0MA 5EEMA 4GSZA 4CEVA 4ZUPA 1C3PA 5G0IA 4GWCA 3ZNSA 4CQFA 3SL0A 3PZLA 3LP7A 5EF8A 5EENA 5EFNA 5THUA 4QA5A 4RHQA 1HQFA 3MZ6A 5G10A 4HWWA 1W22A 4HXQA 4RHKA 1HQXA 4MYFA 3THHA 4LY1A 5EFHA 1ZPGA 1P8SA 5D1CA 4BZ5A 3TF3A 4Q3SA 3MFVA 4RN2A 3Q9EA 3RQDA 2VCGA 1XFKA 3SL1A 2V5WA 3MAXA 3SKKA 2PHOA 3MZ4A 5G0GA 2EIVA 5EFBD 4MXRA 4Q42A 3GN0A 3C0ZA 4ZUQA 5EEIA 3M1RA 3NIPA 4MYNA 1P8QA 4BZ9A 4Q40A 4IXUA 4QA2A 5G0YA 4RHJA 1R1OA 4QA6A 4GWDA 1ZPEA 1ZZ0A 3GMZA 1C3RA 1T5FA 2PLLA 5G1BA 1WOHA 2RLAA 1TBJA 4CBTA 4G3HA 2PHAA 3MENA 5EFJD 3MJLA 5EEKA 3THJA 3E6VA 3F07A 4MYLA 4Q3RA 2VQJA 3SJTA 1T4RA 2EF5A 4RN0A 2CEVA 4Q41A 1T4TA 5FCWA 3TH7A 5CEVA 3Q9FA 4BZ8A 3RLAA 3MMRA 1P8RA 5IWGA 4GSVA 5EEFA 3EW8A 5G0XA 5THVA 3C0YA 4QA7A 3Q9CA 2VQQA 1ZZ1A 4IE3A 4ZUNA 4RHIA 4MYKA 1WVBA 3F06A 3F80A 1TA1A 3KV2A 1VKGA 3E8ZA 2EF4A 3EWFA 3MZ3A 5G17A 3LP4A 5EF7A 4FCKA 1P8PA 4HZEA 4ZUMA 4Q3UA 3ZNRA 5JI5A 1T4PA 2VQOA 1T67A 2VQMA 3MFWA 3F0RA 4Q3RC 3SFHA 1ZZ3A 1WOGA 1PQ3A 4QA0A 4DZ4A 4Q3VA 2VQVA 4IU4A 5LI3A 5HJ9A 4ITYA 4BKXB 5G0HA 3E8QA 1P8NA 4IU0A 2AEBA 4RHLA 1WVAA 4IE1A 4BZ7A 4QA4A 1GQ7A 5DC7A 1T64A 3MZ7A 1HQHA 5G1AA 5EFGA 4IU1A 4QA1A 3EZTA 4Q3QA 2GH6A 5DC8A 1P8MA 5FUEA 5D1DA 5G11A 4ZUOA 1T5GA 5BWZA 5D1BA
chains in the Genus database with same CATH topology
1RLAA 3E9BA 1P8OA 1HQGA 1WOIA 4IE2A 4Q3TA 3DJ8A 4GSMA 4I06A 1HQ5A 4IU5A 5HJAA 3LHLA 4Q3PA 3NIQA 3NIOA 1GQ6A 1TBLA 4RHMA 3E6KA 4RLAA 4IXVA 3CEVA 5RLAA 4FCIA 1CEVA 3THEA 1T4SA 1D3VA 2ZAVA 1TBHA 2A0MA 4GSZA 4CEVA 4GWCA 3SL0A 3PZLA 3LP7A 4RHQA 1HQFA 4HWWA 4HXQA 4RHKA 1HQXA 4MYFA 3THHA 1ZPGA 1P8SA 3TF3A 4Q3SA 3MFVA 1XFKA 3SL1A 3SKKA 2PHOA 2EIVA 4MXRA 4Q42A 3GN0A 3M1RA 3NIPA 4MYNA 1P8QA 4Q40A 4IXUA 4RHJA 1R1OA 4GWDA 1ZPEA 3GMZA 1T5FA 2PLLA 1WOHA 2RLAA 1TBJA 4G3HA 2PHAA 3MJLA 3THJA 3E6VA 4MYLA 4Q3RA 3SJTA 1T4RA 2EF5A 2CEVA 4Q41A 1T4TA 3TH7A 5CEVA 3RLAA 3MMRA 1P8RA 4GSVA 4IE3A 4RHIA 4MYKA 1WVBA 3F80A 3KV2A 1TA1A 3E8ZA 2EF4A 3LP4A 4FCKA 1P8PA 4HZEA 4Q3UA 1T4PA 3MFWA 4Q3RC 4DZ4A 1WOGA 1PQ3A 4Q3VA 4IU4A 5HJ9A 4ITYA 3E8QA 1P8NA 4IU0A 2AEBA 4RHLA 1WVAA 4IE1A 1GQ7A 1HQHA 4IU1A 4Q3QA 1P8MA 1T5GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RLA A;  3E9B A;  1P8O A;  1HQG A;  1WOI A;  4IE2 A;  4Q3T A;  3DJ8 A;  4GSM A;  4I06 A;  1HQ5 A;  4IU5 A;  5HJA A;  3LHL A;  4Q3P A;  3NIQ A;  3NIO A;  1GQ6 A;  1TBL A;  4RHM A;  3E6K A;  4RLA A;  4IXV A;  3CEV A;  5RLA A;  4FCI A;  1CEV A;  3THE A;  1T4S A;  1D3V A;  2ZAV A;  1TBH A;  2A0M A;  4GSZ A;  4CEV A;  4GWC A;  3SL0 A;  3PZL A;  3LP7 A;  4RHQ A;  1HQF A;  4HWW A;  4HXQ A;  4RHK A;  1HQX A;  4MYF A;  3THH A;  1ZPG A;  1P8S A;  3TF3 A;  4Q3S A;  3MFV A;  1XFK A;  3SL1 A;  3SKK A;  2PHO A;  2EIV A;  4MXR A;  4Q42 A;  3GN0 A;  3M1R A;  3NIP A;  4MYN A;  1P8Q A;  4Q40 A;  4IXU A;  4RHJ A;  1R1O A;  4GWD A;  1ZPE A;  3GMZ A;  1T5F A;  2PLL A;  1WOH A;  2RLA A;  1TBJ A;  4G3H A;  2PHA A;  3MJL A;  3THJ A;  3E6V A;  4MYL A;  4Q3R A;  3SJT A;  1T4R A;  2EF5 A;  2CEV A;  4Q41 A;  1T4T A;  3TH7 A;  5CEV A;  3RLA A;  3MMR A;  1P8R A;  4GSV A;  4IE3 A;  4RHI A;  4MYK A;  1WVB A;  3F80 A;  3KV2 A;  1TA1 A;  3E8Z A;  2EF4 A;  3LP4 A;  4FCK A;  1P8P A;  4HZE A;  4Q3U A;  1T4P A;  3MFW A;  4Q3R C;  4DZ4 A;  1WOG A;  1PQ3 A;  4Q3V A;  4IU4 A;  5HJ9 A;  4ITY A;  3E8Q A;  1P8N A;  4IU0 A;  2AEB A;  4RHL A;  1WVA A;  4IE1 A;  1GQ7 A;  1HQH A;  4IU1 A;  4Q3Q A;  1P8M A;  1T5G A; 
#chains in the Genus database with same CATH topology
 1RLA A;  3E9B A;  5THT A;  1P8O A;  5G0J A;  5THS A;  1HQG A;  1WOI A;  4IE2 A;  4Q3T A;  1C3S A;  4ZUR A;  3EZP A;  3SFF A;  3DJ8 A;  5EFK B;  4CBY A;  4GSM A;  2V5X A;  4I06 A;  1HQ5 A;  4IU5 A;  2VQW G;  5G13 A;  5HJA A;  4LXZ A;  3LHL A;  4Q3P A;  3NIQ A;  3NIO A;  1GQ6 A;  1TBL A;  4RHM A;  3E6K A;  1T69 A;  5G1C A;  4RN1 A;  5G12 A;  5DC6 A;  4QA3 A;  5ICN B;  4RLA A;  3C10 A;  4IXV A;  3CEV A;  5RLA A;  3Q9B A;  4FCI A;  4BZ6 A;  1CEV A;  5G3W A;  3THE A;  1T4S A;  1D3V A;  4A69 A;  5IX0 A;  5A2S A;  2ZAV A;  5DC5 A;  1TBH A;  2A0M A;  5EEM A;  4GSZ A;  4CEV A;  4ZUP A;  1C3P A;  5G0I A;  4GWC A;  3ZNS A;  4CQF A;  3SL0 A;  3PZL A;  3LP7 A;  5EF8 A;  5EEN A;  5EFN A;  5THU A;  4QA5 A;  4RHQ A;  1HQF A;  3MZ6 A;  5G10 A;  4HWW A;  1W22 A;  4HXQ A;  4RHK A;  1HQX A;  4MYF A;  3THH A;  4LY1 A;  5EFH A;  1ZPG A;  1P8S A;  5D1C A;  4BZ5 A;  3TF3 A;  4Q3S A;  3MFV A;  4RN2 A;  3Q9E A;  3RQD A;  2VCG A;  1XFK A;  3SL1 A;  2V5W A;  3MAX A;  3SKK A;  2PHO A;  3MZ4 A;  5G0G A;  2EIV A;  5EFB D;  4MXR A;  4Q42 A;  3GN0 A;  3C0Z A;  4ZUQ A;  5EEI A;  3M1R A;  3NIP A;  4MYN A;  1P8Q A;  4BZ9 A;  4Q40 A;  4IXU A;  4QA2 A;  5G0Y A;  4RHJ A;  1R1O A;  4QA6 A;  4GWD A;  1ZPE A;  1ZZ0 A;  3GMZ A;  1C3R A;  1T5F A;  2PLL A;  5G1B A;  1WOH A;  2RLA A;  1TBJ A;  4CBT A;  4G3H A;  2PHA A;  3MEN A;  5EFJ D;  3MJL A;  5EEK A;  3THJ A;  3E6V A;  3F07 A;  4MYL A;  4Q3R A;  2VQJ A;  3SJT A;  1T4R A;  2EF5 A;  4RN0 A;  2CEV A;  4Q41 A;  1T4T A;  5FCW A;  3TH7 A;  5CEV A;  3Q9F A;  4BZ8 A;  3RLA A;  3MMR A;  1P8R A;  5IWG A;  4GSV A;  5EEF A;  3EW8 A;  5G0X A;  5THV A;  3C0Y A;  4QA7 A;  3Q9C A;  2VQQ A;  1ZZ1 A;  4IE3 A;  4ZUN A;  4RHI A;  4MYK A;  1WVB A;  3F06 A;  3F80 A;  1TA1 A;  3KV2 A;  1VKG A;  3E8Z A;  2EF4 A;  3EWF A;  3MZ3 A;  5G17 A;  3LP4 A;  5EF7 A;  4FCK A;  1P8P A;  4HZE A;  4ZUM A;  4Q3U A;  3ZNR A;  5JI5 A;  1T4P A;  2VQO A;  1T67 A;  2VQM A;  3MFW A;  3F0R A;  4Q3R C;  3SFH A;  1ZZ3 A;  1WOG A;  1PQ3 A;  4QA0 A;  4DZ4 A;  4Q3V A;  2VQV A;  4IU4 A;  5LI3 A;  5HJ9 A;  4ITY A;  4BKX B;  5G0H A;  3E8Q A;  1P8N A;  4IU0 A;  2AEB A;  4RHL A;  1WVA A;  4IE1 A;  4BZ7 A;  4QA4 A;  1GQ7 A;  5DC7 A;  1T64 A;  3MZ7 A;  1HQH A;  5G1A A;  5EFG A;  4IU1 A;  4QA1 A;  3EZT A;  4Q3Q A;  2GH6 A;  5DC8 A;  1P8M A;  5FUE A;  5D1D A;  5G11 A;  4ZUO A;  1T5G A;  5BWZ A;  5D1B A; 
#chains in the Genus database with same CATH homology
 1RLA A;  3E9B A;  1P8O A;  1HQG A;  1WOI A;  4IE2 A;  4Q3T A;  3DJ8 A;  4GSM A;  4I06 A;  1HQ5 A;  4IU5 A;  5HJA A;  3LHL A;  4Q3P A;  3NIQ A;  3NIO A;  1GQ6 A;  1TBL A;  4RHM A;  3E6K A;  4RLA A;  4IXV A;  3CEV A;  5RLA A;  4FCI A;  1CEV A;  3THE A;  1T4S A;  1D3V A;  2ZAV A;  1TBH A;  2A0M A;  4GSZ A;  4CEV A;  4GWC A;  3SL0 A;  3PZL A;  3LP7 A;  4RHQ A;  1HQF A;  4HWW A;  4HXQ A;  4RHK A;  1HQX A;  4MYF A;  3THH A;  1ZPG A;  1P8S A;  3TF3 A;  4Q3S A;  3MFV A;  1XFK A;  3SL1 A;  3SKK A;  2PHO A;  2EIV A;  4MXR A;  4Q42 A;  3GN0 A;  3M1R A;  3NIP A;  4MYN A;  1P8Q A;  4Q40 A;  4IXU A;  4RHJ A;  1R1O A;  4GWD A;  1ZPE A;  3GMZ A;  1T5F A;  2PLL A;  1WOH A;  2RLA A;  1TBJ A;  4G3H A;  2PHA A;  3MJL A;  3THJ A;  3E6V A;  4MYL A;  4Q3R A;  3SJT A;  1T4R A;  2EF5 A;  2CEV A;  4Q41 A;  1T4T A;  3TH7 A;  5CEV A;  3RLA A;  3MMR A;  1P8R A;  4GSV A;  4IE3 A;  4RHI A;  4MYK A;  1WVB A;  3F80 A;  3KV2 A;  1TA1 A;  3E8Z A;  2EF4 A;  3LP4 A;  4FCK A;  1P8P A;  4HZE A;  4Q3U A;  1T4P A;  3MFW A;  4Q3R C;  4DZ4 A;  1WOG A;  1PQ3 A;  4Q3V A;  4IU4 A;  5HJ9 A;  4ITY A;  3E8Q A;  1P8N A;  4IU0 A;  2AEB A;  4RHL A;  1WVA A;  4IE1 A;  1GQ7 A;  1HQH A;  4IU1 A;  4Q3Q A;  1P8M A;  1T5G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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